Wall clock time and date at job start Wed Apr 1 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47391 * 240.00465 * 3 2 1 5 5 H 1.48502 * 109.46804 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47203 * 120.00430 * 3 2 1 7 7 C 1.38818 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00193 * 180.02562 * 9 7 2 11 11 C 1.52988 * 109.47507 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.84890 * 43.80546 * 11 10 9 13 13 C 1.53779 * 113.61675 * 175.00161 * 11 10 9 14 14 C 1.53783 * 87.08409 * 139.98305 * 13 11 10 15 15 H 1.08998 * 113.61941 * 219.93744 * 14 13 11 16 16 N 1.46504 * 113.61619 * 89.11533 * 14 13 11 17 17 C 1.34773 * 120.00167 * 155.00322 * 16 14 13 18 18 O 1.21277 * 119.99903 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00025 * 180.02562 * 17 16 14 20 20 H 1.08997 * 110.36971 * 60.72322 * 19 17 16 21 21 C 1.54257 * 110.32398 * 298.54424 * 19 17 16 22 22 C 1.54379 * 105.06256 * 241.10546 * 21 19 17 23 23 N 1.48562 * 104.69842 * 336.08765 * 22 21 19 24 24 C 1.39675 * 111.00298 * 159.09832 * 23 22 21 25 25 C 1.38908 * 120.07607 * 239.59970 * 24 23 22 26 26 C 1.38105 * 119.92496 * 179.76589 * 25 24 23 27 27 C 1.38283 * 120.07192 * 0.51281 * 26 25 24 28 28 C 1.38286 * 120.15181 * 359.73480 * 27 26 25 29 29 C 1.38103 * 120.07649 * 0.02562 * 28 27 26 30 30 C 1.48856 * 104.07618 * 39.46842 * 23 22 21 31 31 C 1.53784 * 87.08026 * 334.56939 * 14 13 11 32 32 H 0.97002 * 119.99638 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00103 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.46947 * 59.99690 * 10 9 7 35 35 H 1.08998 * 109.47399 * 300.00864 * 10 9 7 36 36 H 1.08997 * 113.61414 * 25.43340 * 13 11 10 37 37 H 1.08999 * 113.61645 * 254.52904 * 13 11 10 38 38 H 0.97003 * 119.99738 * 335.00675 * 16 14 13 39 39 H 1.08998 * 110.32238 * 122.20918 * 21 19 17 40 40 H 1.08997 * 110.41265 * 0.04445 * 21 19 17 41 41 H 1.09002 * 110.41258 * 94.92615 * 22 21 19 42 42 H 1.09002 * 110.41328 * 217.24846 * 22 21 19 43 43 H 1.08006 * 120.03646 * 359.97438 * 25 24 23 44 44 H 1.07992 * 119.96277 * 180.25328 * 26 25 24 45 45 H 1.08001 * 119.92690 * 179.76739 * 27 26 25 46 46 H 1.08005 * 119.96411 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.04210 * 180.02562 * 29 28 27 48 48 H 1.09003 * 110.39541 * 201.75499 * 30 23 22 49 49 H 1.09004 * 110.49212 * 79.38626 * 30 23 22 50 50 H 1.08998 * 113.61849 * 139.98091 * 31 14 13 51 51 H 1.08996 * 113.61153 * 270.88492 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.2381 -4.6702 -0.6968 13 6 1.7305 -6.2000 -0.1240 14 6 0.7045 -6.7001 0.9066 15 1 1.1223 -7.3907 1.6391 16 7 -0.5387 -7.1907 0.3066 17 6 -1.2959 -8.0901 0.9655 18 8 -0.9479 -8.4937 2.0549 19 6 -2.5744 -8.5953 0.3480 20 1 -2.3668 -9.0979 -0.5966 21 6 -3.5608 -7.4297 0.1292 22 6 -4.7955 -7.7827 0.9860 23 7 -4.7433 -9.2603 1.1316 24 6 -5.4894 -9.6813 2.2347 25 6 -4.8741 -10.3798 3.2658 26 6 -5.6140 -10.7904 4.3573 27 6 -6.9679 -10.5161 4.4195 28 6 -7.5846 -9.8255 3.3924 29 6 -6.8498 -9.4077 2.3003 30 6 -3.2961 -9.5547 1.3186 31 6 0.6162 -5.2483 1.4062 32 1 -0.4850 0.8401 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 2.6847 -3.7145 0.8894 35 1 2.6848 -3.7146 -0.8904 36 1 2.7586 -6.2221 0.2373 37 1 1.6170 -6.6537 -1.1086 38 1 -0.8169 -6.8683 -0.5650 39 1 -3.8373 -7.3602 -0.9228 40 1 -3.1213 -6.4912 0.4672 41 1 -4.7310 -7.3020 1.9621 42 1 -5.7108 -7.4832 0.4754 43 1 -3.8177 -10.5986 3.2155 44 1 -5.1354 -11.3298 5.1611 45 1 -7.5449 -10.8416 5.2724 46 1 -8.6424 -9.6133 3.4439 47 1 -7.3319 -8.8680 1.4986 48 1 -3.0825 -10.5912 1.0576 49 1 -2.9954 -9.3526 2.3467 50 1 -0.3968 -4.9336 1.6570 51 1 1.3397 -5.0102 2.1859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734210708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:10 Heat of formation + Delta-G solvation = 33.709087 kcal Electronic energy + Delta-G solvation = -29089.628021 eV Core-core repulsion = 25182.699028 eV Total energy + Delta-G solvation = -3906.928993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.04229 -39.99901 -38.64554 -37.43947 -34.58250 -33.58967 -32.68254 -31.43147 -30.84573 -29.43946 -28.68283 -26.84337 -25.53671 -24.33830 -23.25675 -23.04638 -22.07126 -21.42558 -21.00070 -20.00488 -19.11673 -18.14564 -17.30963 -17.02199 -16.28499 -16.10776 -15.72050 -15.39539 -14.96473 -14.73986 -14.65297 -14.34295 -14.23788 -13.99330 -13.69293 -13.63587 -13.36044 -13.15901 -12.78952 -12.73981 -12.46603 -12.41215 -12.16569 -11.90225 -11.84197 -11.67352 -11.56220 -11.29064 -11.09530 -11.04678 -10.82374 -10.51023 -10.38030 -10.12871 -10.03024 -9.89686 -9.84839 -9.61931 -9.20710 -9.06519 -8.85067 -8.23641 -6.91209 -5.76764 -3.04887 1.08459 1.13577 2.43406 2.89722 3.38405 3.43628 3.47890 3.48965 3.71784 4.03830 4.20502 4.49832 4.57149 4.63761 4.65691 4.69454 4.79202 4.81142 4.86362 4.93599 5.02958 5.08910 5.11147 5.16190 5.17959 5.28808 5.40928 5.49383 5.52442 5.55284 5.57342 5.62471 5.70414 5.74968 5.83919 5.90721 5.93345 5.98919 6.08590 6.12650 6.20408 6.28232 6.28890 6.39826 6.44355 6.53823 6.59896 6.76904 6.91682 6.97696 7.36794 7.69169 8.06034 8.42579 9.53475 10.12496 10.46903 11.46154 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.001899 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.350489 B =14737.956486 C =15774.148305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.114 3.886 15 H 0.099 0.901 16 N -0.706 5.706 17 C 0.523 3.477 18 O -0.540 6.540 19 C -0.115 4.115 20 H 0.111 0.889 21 C -0.119 4.119 22 C 0.039 3.961 23 N -0.467 5.467 24 C 0.100 3.900 25 C -0.165 4.165 26 C -0.096 4.096 27 C -0.146 4.146 28 C -0.100 4.100 29 C -0.135 4.135 30 C 0.042 3.958 31 C -0.138 4.138 32 H 0.255 0.745 33 H 0.383 0.617 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.403 0.597 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.090 0.910 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 -24.206 2.288 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.034 3.966 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.009 3.991 15 H 0.117 0.883 16 N -0.356 5.356 17 C 0.308 3.692 18 O -0.417 6.417 19 C -0.137 4.137 20 H 0.129 0.871 21 C -0.157 4.157 22 C -0.086 4.086 23 N -0.183 5.183 24 C 0.003 3.997 25 C -0.186 4.186 26 C -0.115 4.115 27 C -0.165 4.165 28 C -0.118 4.118 29 C -0.155 4.155 30 C -0.085 4.085 31 C -0.177 4.177 32 H 0.065 0.935 33 H 0.216 0.784 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.237 0.763 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.834 -24.610 2.553 27.427 hybrid contribution 0.301 1.491 0.129 1.527 sum -11.533 -23.119 2.682 25.975 Atomic orbital electron populations 1.69647 1.05104 1.25714 1.57863 1.24741 0.95540 0.97694 1.03127 0.86263 0.78516 0.83542 0.77842 1.21287 1.21696 1.21293 1.19204 0.91003 0.84281 1.42583 0.91290 1.42332 1.05804 0.99978 1.89427 1.20637 0.93023 0.85231 0.97677 1.22752 0.99099 0.94239 0.97034 0.89439 1.23311 0.98893 0.96587 0.98851 1.21966 0.84460 0.96003 0.96637 0.88323 1.45667 1.23597 1.43884 1.22444 1.20386 0.84904 0.78539 0.85335 1.90693 1.72104 1.58223 1.20688 1.22042 0.93064 0.97756 1.00874 0.87103 1.22384 0.94120 0.97449 1.01731 1.23191 0.99519 0.85915 0.99998 1.62622 1.08202 1.12839 1.34630 1.19092 0.93466 0.98068 0.89119 1.21421 1.00461 1.02892 0.93782 1.21040 0.94163 0.98754 0.97527 1.21101 0.95048 1.00931 0.99380 1.21029 0.99700 0.97468 0.93637 1.20802 0.92334 1.03163 0.99218 1.23272 0.85496 0.99715 0.99991 1.23406 1.02422 0.94102 0.97736 0.93508 0.78362 0.96230 0.96416 0.88718 0.91249 0.76280 0.89392 0.89854 0.92520 0.89079 0.85195 0.86022 0.86224 0.85923 0.85806 0.89118 0.89990 0.91406 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.39 5.60 -59.92 -0.34 -18.73 16 10 C 0.16 3.17 6.10 -4.05 -0.02 3.14 16 11 C -0.11 -1.68 3.63 -89.81 -0.33 -2.00 16 12 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.14 -1.59 7.39 -25.92 -0.19 -1.78 16 14 C 0.11 1.38 4.33 -67.11 -0.29 1.09 16 15 H 0.10 1.28 7.46 -51.93 -0.39 0.89 16 16 N -0.71 -7.35 5.13 -53.02 -0.27 -7.62 16 17 C 0.52 5.95 6.96 -10.99 -0.08 5.87 16 18 O -0.54 -8.16 15.05 5.56 0.08 -8.08 16 19 C -0.12 -0.99 3.45 -90.39 -0.31 -1.30 16 20 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.12 -0.93 6.56 -25.35 -0.17 -1.09 16 22 C 0.04 0.34 5.91 -2.18 -0.01 0.33 16 23 N -0.47 -4.47 5.44 -166.45 -0.91 -5.38 16 24 C 0.10 1.01 5.48 -83.79 -0.46 0.55 16 25 C -0.17 -1.64 8.82 -39.38 -0.35 -1.99 16 26 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 27 C -0.15 -1.19 10.04 -39.55 -0.40 -1.59 16 28 C -0.10 -0.82 10.04 -39.61 -0.40 -1.21 16 29 C -0.14 -1.23 9.37 -39.38 -0.37 -1.60 16 30 C 0.04 0.40 4.57 -2.01 -0.01 0.39 16 31 C -0.14 -1.99 7.43 -25.92 -0.19 -2.18 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.38 10.10 7.67 -40.82 -0.31 9.78 16 34 H 0.02 0.39 7.85 -51.93 -0.41 -0.01 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.40 3.38 8.68 -40.82 -0.35 3.03 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.72 7.65 -51.93 -0.40 0.32 16 41 H 0.06 0.56 7.97 -51.93 -0.41 0.14 16 42 H 0.09 0.67 8.02 -51.93 -0.42 0.26 16 43 H 0.13 1.24 5.82 -52.48 -0.31 0.94 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 47 H 0.12 0.98 7.89 -52.49 -0.41 0.56 16 48 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.93 5.14 -51.93 -0.27 0.67 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 LS Contribution 408.24 15.07 6.15 6.15 Total: -1.00 -33.31 408.24 -12.07 -45.38 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -8.28 Total: 10.39 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -4.22 Total: -12.03 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.79 Total: -59.24 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.08 Total: -8.08 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.31 -12.07 -45.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734210708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.090 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds