Wall clock time and date at job start Wed Apr 1 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00273 * 2 1 4 4 H 1.48497 * 109.47391 * 240.00465 * 3 2 1 5 5 H 1.48502 * 109.46804 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47203 * 120.00430 * 3 2 1 7 7 C 1.38818 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00369 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99624 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00193 * 180.02562 * 9 7 2 11 11 C 1.52988 * 109.47507 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.84890 * 43.80546 * 11 10 9 13 13 C 1.53779 * 113.61675 * 175.00161 * 11 10 9 14 14 C 1.53783 * 87.08409 * 139.98305 * 13 11 10 15 15 H 1.08998 * 113.61941 * 219.93744 * 14 13 11 16 16 N 1.46504 * 113.61619 * 89.11533 * 14 13 11 17 17 C 1.34773 * 120.00167 * 155.00322 * 16 14 13 18 18 O 1.21277 * 119.99903 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00025 * 180.02562 * 17 16 14 20 20 H 1.08997 * 110.36971 * 60.72322 * 19 17 16 21 21 C 1.54257 * 110.32398 * 298.54424 * 19 17 16 22 22 C 1.54379 * 105.06256 * 241.10546 * 21 19 17 23 23 N 1.48562 * 104.69842 * 336.08765 * 22 21 19 24 24 C 1.39675 * 111.00298 * 159.09832 * 23 22 21 25 25 C 1.38908 * 120.07607 * 239.59970 * 24 23 22 26 26 C 1.38105 * 119.92496 * 179.76589 * 25 24 23 27 27 C 1.38283 * 120.07192 * 0.51281 * 26 25 24 28 28 C 1.38286 * 120.15181 * 359.73480 * 27 26 25 29 29 C 1.38103 * 120.07649 * 0.02562 * 28 27 26 30 30 C 1.48856 * 104.07618 * 39.46842 * 23 22 21 31 31 C 1.53784 * 87.08026 * 334.56939 * 14 13 11 32 32 H 0.97002 * 119.99638 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00103 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.46947 * 59.99690 * 10 9 7 35 35 H 1.08998 * 109.47399 * 300.00864 * 10 9 7 36 36 H 1.08997 * 113.61414 * 25.43340 * 13 11 10 37 37 H 1.08999 * 113.61645 * 254.52904 * 13 11 10 38 38 H 0.97003 * 119.99738 * 335.00675 * 16 14 13 39 39 H 1.08998 * 110.32238 * 122.20918 * 21 19 17 40 40 H 1.08997 * 110.41265 * 0.04445 * 21 19 17 41 41 H 1.09002 * 110.41258 * 94.92615 * 22 21 19 42 42 H 1.09002 * 110.41328 * 217.24846 * 22 21 19 43 43 H 1.08006 * 120.03646 * 359.97438 * 25 24 23 44 44 H 1.07992 * 119.96277 * 180.25328 * 26 25 24 45 45 H 1.08001 * 119.92690 * 179.76739 * 27 26 25 46 46 H 1.08005 * 119.96411 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.04210 * 180.02562 * 29 28 27 48 48 H 1.09003 * 110.39541 * 201.75499 * 30 23 22 49 49 H 1.09004 * 110.49212 * 79.38626 * 30 23 22 50 50 H 1.08998 * 113.61849 * 139.98091 * 31 14 13 51 51 H 1.08996 * 113.61153 * 270.88492 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.2381 -4.6702 -0.6968 13 6 1.7305 -6.2000 -0.1240 14 6 0.7045 -6.7001 0.9066 15 1 1.1223 -7.3907 1.6391 16 7 -0.5387 -7.1907 0.3066 17 6 -1.2959 -8.0901 0.9655 18 8 -0.9479 -8.4937 2.0549 19 6 -2.5744 -8.5953 0.3480 20 1 -2.3668 -9.0979 -0.5966 21 6 -3.5608 -7.4297 0.1292 22 6 -4.7955 -7.7827 0.9860 23 7 -4.7433 -9.2603 1.1316 24 6 -5.4894 -9.6813 2.2347 25 6 -4.8741 -10.3798 3.2658 26 6 -5.6140 -10.7904 4.3573 27 6 -6.9679 -10.5161 4.4195 28 6 -7.5846 -9.8255 3.3924 29 6 -6.8498 -9.4077 2.3003 30 6 -3.2961 -9.5547 1.3186 31 6 0.6162 -5.2483 1.4062 32 1 -0.4850 0.8401 0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 2.6847 -3.7145 0.8894 35 1 2.6848 -3.7146 -0.8904 36 1 2.7586 -6.2221 0.2373 37 1 1.6170 -6.6537 -1.1086 38 1 -0.8169 -6.8683 -0.5650 39 1 -3.8373 -7.3602 -0.9228 40 1 -3.1213 -6.4912 0.4672 41 1 -4.7310 -7.3020 1.9621 42 1 -5.7108 -7.4832 0.4754 43 1 -3.8177 -10.5986 3.2155 44 1 -5.1354 -11.3298 5.1611 45 1 -7.5449 -10.8416 5.2724 46 1 -8.6424 -9.6133 3.4439 47 1 -7.3319 -8.8680 1.4986 48 1 -3.0825 -10.5912 1.0576 49 1 -2.9954 -9.3526 2.3467 50 1 -0.3968 -4.9336 1.6570 51 1 1.3397 -5.0102 2.1859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734210708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:09 Heat of formation + Delta-G solvation = 12.552697 kcal Electronic energy + Delta-G solvation = -29090.545431 eV Core-core repulsion = 25182.699028 eV Total energy + Delta-G solvation = -3907.846403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.85477 -40.89156 -39.62841 -38.24007 -36.34020 -34.66232 -33.65441 -32.67255 -32.09971 -30.17731 -29.39974 -28.43094 -26.63129 -25.55429 -24.65141 -23.71471 -23.10323 -22.66194 -21.69849 -20.80802 -20.30612 -19.06091 -18.89589 -18.03600 -17.13173 -16.96403 -16.70325 -16.51256 -16.11784 -15.84892 -15.80042 -15.39878 -15.28191 -15.06652 -14.97053 -14.64590 -14.42544 -14.28129 -13.96044 -13.66225 -13.43438 -13.38957 -13.12301 -13.11773 -12.91445 -12.68551 -12.60541 -12.47497 -12.24932 -12.23090 -11.96189 -11.92537 -11.80083 -11.71623 -11.35501 -11.14679 -10.89526 -10.83875 -10.68095 -10.05391 -9.88323 -8.97601 -8.94640 -7.95113 -5.23111 0.40298 0.45986 1.46703 1.49668 1.52945 1.55768 2.03701 2.56050 2.69423 3.01114 3.31873 3.37632 3.51185 3.59405 3.60372 3.79123 3.93654 3.96034 3.99793 4.05629 4.09975 4.20719 4.28237 4.33752 4.35694 4.49864 4.54677 4.57005 4.61440 4.70482 4.76701 4.81095 4.83333 4.84629 4.88965 4.92039 4.92493 4.98939 5.02985 5.10842 5.15265 5.25181 5.27675 5.36974 5.48092 5.49126 5.62933 5.67750 5.77161 5.84839 6.27738 6.27894 6.51307 7.18814 7.33779 8.11975 8.34338 9.28188 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.001899 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.350489 B =14737.956486 C =15774.148305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.159 3.841 11 C -0.109 4.109 12 H 0.088 0.912 13 C -0.116 4.116 14 C 0.126 3.874 15 H 0.092 0.908 16 N -0.696 5.696 17 C 0.522 3.478 18 O -0.581 6.581 19 C -0.106 4.106 20 H 0.139 0.861 21 C -0.113 4.113 22 C 0.037 3.963 23 N -0.465 5.465 24 C 0.081 3.919 25 C -0.183 4.183 26 C -0.107 4.107 27 C -0.150 4.150 28 C -0.103 4.103 29 C -0.145 4.145 30 C 0.043 3.957 31 C -0.143 4.143 32 H 0.251 0.749 33 H 0.373 0.627 34 H 0.018 0.982 35 H 0.022 0.978 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.415 0.585 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.106 0.894 43 H 0.125 0.875 44 H 0.136 0.864 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.134 0.866 48 H 0.096 0.904 49 H 0.058 0.942 50 H 0.050 0.950 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.129 -25.070 1.153 27.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.128 4.128 12 H 0.106 0.894 13 C -0.154 4.154 14 C 0.020 3.980 15 H 0.110 0.890 16 N -0.347 5.347 17 C 0.309 3.691 18 O -0.461 6.461 19 C -0.128 4.128 20 H 0.157 0.843 21 C -0.151 4.151 22 C -0.088 4.088 23 N -0.181 5.181 24 C -0.016 4.016 25 C -0.204 4.204 26 C -0.125 4.125 27 C -0.169 4.169 28 C -0.122 4.122 29 C -0.165 4.165 30 C -0.084 4.084 31 C -0.182 4.182 32 H 0.060 0.940 33 H 0.205 0.795 34 H 0.036 0.964 35 H 0.040 0.960 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.252 0.748 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.124 0.876 43 H 0.142 0.858 44 H 0.154 0.846 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.152 0.848 48 H 0.114 0.886 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.903 -25.498 1.392 28.174 hybrid contribution 0.328 1.712 0.552 1.829 sum -11.574 -23.786 1.943 26.524 Atomic orbital electron populations 1.69803 1.06549 1.26094 1.59541 1.25572 0.96446 1.01113 1.03824 0.85217 0.77216 0.79186 0.78182 1.20250 1.22133 1.20581 1.19627 0.91500 0.85581 1.41177 0.90791 1.42559 1.05582 1.01218 1.89312 1.20833 0.93846 0.84648 0.97423 1.22674 0.98550 0.94231 0.97336 0.89356 1.23219 0.98857 0.93443 0.99929 1.21755 0.85303 0.94215 0.96740 0.88957 1.45591 1.22953 1.43370 1.22795 1.20878 0.85460 0.78008 0.84731 1.90682 1.73176 1.59693 1.22569 1.22048 0.91468 0.97885 1.01376 0.84276 1.22397 0.93296 0.96486 1.02960 1.23242 1.00702 0.85485 0.99387 1.62687 1.07845 1.13113 1.34470 1.19306 0.94133 0.98656 0.89525 1.21535 1.00516 1.03738 0.94603 1.21309 0.94766 0.98843 0.97597 1.21430 0.94927 1.00423 1.00095 1.21371 1.00881 0.96776 0.93136 1.21028 0.92089 1.03394 1.00000 1.23215 0.85891 1.00300 0.99009 1.23411 1.01171 0.96193 0.97424 0.94033 0.79512 0.96408 0.96026 0.87778 0.88793 0.74758 0.86870 0.90848 0.94463 0.87591 0.85761 0.84609 0.84010 0.83596 0.84792 0.88602 0.92370 0.93096 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 2 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 3 Si 0.97 46.20 29.55 68.60 2.03 48.22 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -37.60 5.60 -343.47 -1.92 -39.52 16 10 C 0.16 6.10 6.10 86.38 0.53 6.63 16 11 C -0.11 -3.13 3.63 -10.27 -0.04 -3.17 16 12 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 13 C -0.12 -2.40 7.39 31.12 0.23 -2.17 16 14 C 0.13 2.89 4.33 45.52 0.20 3.08 16 15 H 0.09 2.33 7.46 -2.39 -0.02 2.31 16 16 N -0.70 -13.51 5.13 -440.03 -2.26 -15.77 16 17 C 0.52 11.55 6.96 87.66 0.61 12.16 16 18 O -0.58 -17.86 15.05 -3.02 -0.05 -17.91 16 19 C -0.11 -1.68 3.45 -10.65 -0.04 -1.72 16 20 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 21 C -0.11 -1.61 6.56 31.49 0.21 -1.41 16 22 C 0.04 0.62 5.91 86.45 0.51 1.13 16 23 N -0.47 -8.73 5.44 -680.54 -3.70 -12.44 16 24 C 0.08 1.65 5.48 38.21 0.21 1.86 16 25 C -0.18 -3.77 8.82 22.40 0.20 -3.58 16 26 C -0.11 -1.87 10.04 22.25 0.22 -1.64 16 27 C -0.15 -2.29 10.04 22.29 0.22 -2.06 16 28 C -0.10 -1.56 10.04 22.25 0.22 -1.34 16 29 C -0.15 -2.56 9.37 22.40 0.21 -2.35 16 30 C 0.04 0.82 4.57 86.39 0.39 1.22 16 31 C -0.14 -4.13 7.43 31.12 0.23 -3.89 16 32 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 33 H 0.37 20.01 7.67 -92.71 -0.71 19.30 16 34 H 0.02 0.70 7.85 -2.39 -0.02 0.68 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 2.02 8.10 -2.39 -0.02 2.00 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.42 6.01 8.68 -92.71 -0.80 5.21 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.21 7.65 -2.39 -0.02 1.20 16 41 H 0.04 0.76 7.97 -2.39 -0.02 0.74 16 42 H 0.11 1.44 8.02 -2.39 -0.02 1.42 16 43 H 0.12 2.58 5.82 -2.91 -0.02 2.56 16 44 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 46 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 47 H 0.13 1.98 7.89 -2.91 -0.02 1.95 16 48 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.06 1.41 5.14 -2.39 -0.01 1.40 16 50 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.08 2.48 7.90 -2.39 -0.02 2.46 16 Total: -1.00 -72.69 408.24 -0.77 -73.46 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.58 Total: 37.25 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 5.43 Total: -14.25 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -7.60 Total: -126.77 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.69 -0.77 -73.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734210708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.011 kcal (2) G-P(sol) polarization free energy of solvation -72.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds