Wall clock time and date at job start Wed Apr 1 2020 02:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48501 * 109.47305 * 240.00048 * 3 2 1 5 5 H 1.48503 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47013 * 119.99867 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00092 * 196.97586 * 7 2 1 9 9 N 1.36940 * 119.99798 * 16.97521 * 7 2 1 10 10 C 1.46940 * 120.56333 * 28.28166 * 9 7 2 11 11 C 1.53312 * 108.70244 * 125.77692 * 10 9 7 12 12 C 1.52283 * 109.41549 * 53.52207 * 11 10 9 13 13 C 1.54510 * 110.20846 * 177.79106 * 12 11 10 14 14 C 1.55248 * 101.44001 * 206.61594 * 13 12 11 15 15 N 1.47482 * 104.78800 * 36.66298 * 14 13 12 16 16 C 1.34783 * 125.65781 * 155.93163 * 15 14 13 17 17 O 1.21693 * 119.99936 * 185.18954 * 16 15 14 18 18 C 1.46679 * 119.99816 * 5.18272 * 16 15 14 19 19 N 1.37652 * 126.23365 * 5.90727 * 18 16 15 20 20 H 0.97001 * 125.67589 * 0.22253 * 19 18 16 21 21 C 1.35535 * 108.64081 * 180.25958 * 19 18 16 22 22 C 1.35447 * 108.87279 * 359.97438 * 21 19 18 23 23 C 1.37877 * 126.23230 * 186.21398 * 18 16 15 24 24 C 1.50701 * 126.45396 * 359.75834 * 23 18 16 25 25 C 1.52998 * 117.49523 * 188.74828 * 24 23 18 26 26 C 1.52999 * 117.49648 * 120.09153 * 24 23 18 27 27 C 1.47169 * 108.68145 * 335.66906 * 15 14 13 28 28 C 1.52267 * 111.27505 * 300.36081 * 12 11 10 29 29 C 1.46928 * 120.56654 * 208.30194 * 9 7 2 30 30 H 0.96999 * 120.00063 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.59602 * 6.01111 * 10 9 7 32 32 H 1.09005 * 109.72774 * 245.61814 * 10 9 7 33 33 H 1.08997 * 109.48002 * 293.54876 * 11 10 9 34 34 H 1.08997 * 109.49122 * 173.51308 * 11 10 9 35 35 H 1.08994 * 111.01429 * 324.84092 * 13 12 11 36 36 H 1.09001 * 111.01202 * 88.72270 * 13 12 11 37 37 H 1.09004 * 110.48310 * 277.81099 * 14 13 12 38 38 H 1.08989 * 110.33150 * 155.44720 * 14 13 12 39 39 H 1.07998 * 125.56091 * 180.02562 * 21 19 18 40 40 H 1.08008 * 126.06539 * 180.02562 * 22 21 19 41 41 H 1.08995 * 115.55015 * 334.41901 * 24 23 18 42 42 H 1.09002 * 117.50259 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.49913 * 145.02190 * 25 24 23 44 44 H 1.09005 * 117.49903 * 214.98178 * 26 24 23 45 45 H 1.08998 * 117.50064 * 359.97438 * 26 24 23 46 46 H 1.09000 * 109.90959 * 121.10276 * 27 15 14 47 47 H 1.08997 * 109.90672 * 242.17561 * 27 15 14 48 48 H 1.09001 * 109.48207 * 179.61273 * 28 12 11 49 49 H 1.09000 * 109.47632 * 299.64846 * 28 12 11 50 50 H 1.09005 * 109.59239 * 353.97894 * 29 9 7 51 51 H 1.08994 * 109.60097 * 114.44295 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0550 -1.2223 0.2736 9 7 1.3703 -2.3624 -0.3452 10 6 0.2288 -2.3390 -1.2701 11 6 0.5109 -3.3087 -2.4237 12 6 0.8575 -4.6798 -1.8591 13 6 1.0913 -5.6864 -3.0078 14 6 0.7304 -7.0298 -2.3183 15 7 -0.3977 -6.7037 -1.4260 16 6 -1.3244 -7.5752 -0.9805 17 8 -2.2676 -7.1770 -0.3226 18 6 -1.1961 -9.0034 -1.2888 19 7 -0.1320 -9.6073 -1.9195 20 1 0.6676 -9.1580 -2.2353 21 6 -0.3879 -10.9340 -2.0266 22 6 -1.5976 -11.1927 -1.4751 23 6 -2.1220 -9.9848 -1.0049 24 6 -3.4491 -9.7919 -0.3172 25 6 -4.2283 -11.0474 0.0793 26 6 -4.7092 -10.1853 -1.0905 27 6 -0.3400 -5.2703 -1.0977 28 6 2.0847 -4.6131 -0.9603 29 6 1.8132 -3.6517 0.2027 30 1 -0.4850 0.8400 -0.0004 31 1 0.0977 -1.3310 -1.6636 32 1 -0.6758 -2.6475 -0.7460 33 1 1.3478 -2.9369 -3.0147 34 1 -0.3734 -3.3888 -3.0559 35 1 0.4263 -5.4831 -3.8471 36 1 2.1337 -5.6805 -3.3265 37 1 1.5763 -7.4009 -1.7396 38 1 0.4255 -7.7668 -3.0611 39 1 0.2664 -11.6654 -2.4773 40 1 -2.0730 -12.1604 -1.4102 41 1 -3.5140 -8.9289 0.3455 42 1 -3.7810 -12.0130 -0.1568 43 1 -4.8064 -11.0104 1.0027 44 1 -5.6034 -9.5813 -0.9364 45 1 -4.5785 -10.5832 -2.0968 46 1 -1.2602 -4.7795 -1.4149 47 1 -0.2015 -5.1406 -0.0244 48 1 2.3022 -5.6064 -0.5676 49 1 2.9380 -4.2549 -1.5362 50 1 2.7266 -3.5092 0.7802 51 1 1.0336 -4.0639 0.8433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040721925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:44 Heat of formation + Delta-G solvation = 68.257862 kcal Electronic energy + Delta-G solvation = -30852.543794 eV Core-core repulsion = 26947.112949 eV Total energy + Delta-G solvation = -3905.430845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.67833 -40.09455 -38.16460 -37.09162 -35.90281 -33.21646 -31.28462 -30.92835 -30.18509 -29.64605 -29.20025 -26.64599 -24.99059 -23.52965 -22.79412 -22.45660 -22.24935 -21.56743 -20.92212 -20.66781 -18.75451 -18.21305 -17.69051 -16.58959 -16.30159 -16.04263 -15.67858 -15.06442 -14.86534 -14.59639 -14.25411 -14.17834 -13.87769 -13.64733 -13.36959 -13.24954 -13.05548 -12.93809 -12.88805 -12.63198 -12.27095 -12.04950 -11.74133 -11.59375 -11.53787 -11.43181 -11.25968 -10.95909 -10.86989 -10.72897 -10.52810 -10.48236 -10.26526 -10.25202 -9.87026 -9.81467 -9.57605 -9.41452 -8.87297 -8.69015 -8.46270 -8.19218 -6.66744 -5.79022 -3.22168 1.34545 2.50890 2.82688 3.05324 3.30309 3.37584 3.43763 3.44361 4.01038 4.39969 4.44508 4.48910 4.60467 4.73766 4.82591 4.85808 4.93330 5.08155 5.11469 5.21338 5.26588 5.31670 5.35719 5.39231 5.57805 5.60012 5.65305 5.68975 5.81418 5.82376 5.86609 5.96094 6.04827 6.05855 6.07490 6.12941 6.21325 6.28720 6.36129 6.46180 6.54648 6.58197 6.60364 6.70566 6.78441 6.79383 6.94302 7.17508 7.33804 7.52023 7.65499 7.78595 8.19081 8.44789 9.20740 9.84009 10.40717 11.29199 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.002505 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.717484 B =11174.440371 C =11914.492428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.169 3.831 11 C -0.126 4.126 12 C -0.055 4.055 13 C -0.124 4.124 14 C 0.088 3.912 15 N -0.618 5.618 16 C 0.599 3.401 17 O -0.523 6.523 18 C -0.042 4.042 19 N -0.544 5.544 20 H 0.418 0.582 21 C 0.017 3.983 22 C -0.208 4.208 23 C -0.045 4.045 24 C -0.088 4.088 25 C -0.176 4.176 26 C -0.170 4.170 27 C 0.120 3.880 28 C -0.118 4.118 29 C 0.143 3.857 30 H 0.255 0.745 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.048 0.952 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -23.048 -7.656 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.166 4.166 12 C -0.056 4.056 13 C -0.162 4.162 14 C -0.036 4.036 15 N -0.352 5.352 16 C 0.389 3.611 17 O -0.399 6.399 18 C -0.155 4.155 19 N -0.144 5.144 20 H 0.260 0.740 21 C -0.118 4.118 22 C -0.232 4.232 23 C -0.054 4.054 24 C -0.106 4.106 25 C -0.213 4.213 26 C -0.207 4.207 27 C -0.001 4.001 28 C -0.158 4.158 29 C 0.017 3.983 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.187 0.813 40 H 0.158 0.842 41 H 0.144 0.856 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.941 -22.577 -7.283 23.742 hybrid contribution 0.956 0.902 -0.263 1.340 sum 0.015 -21.675 -7.546 22.951 Atomic orbital electron populations 1.70019 1.05239 1.25659 1.53620 1.25051 0.95267 0.98404 1.00842 0.86383 0.78915 0.83437 0.78085 1.21078 1.21640 1.20905 1.19125 0.92504 0.84812 1.41967 0.91799 1.44019 1.36045 1.01463 1.49729 1.20825 0.88737 0.98318 0.87798 1.22111 1.00260 0.94163 1.00028 1.20983 0.94826 0.95558 0.94190 1.22920 1.02307 0.92890 0.98096 1.22584 0.89364 0.99036 0.92603 1.48538 1.27348 1.10467 1.48830 1.16690 0.81663 0.83074 0.79689 1.90822 1.31052 1.78049 1.40008 1.20154 0.91956 0.92770 1.10598 1.42636 1.17604 1.08096 1.46079 0.73951 1.21984 0.99305 0.84889 1.05659 1.20694 0.96660 0.98274 1.07616 1.19040 0.94402 0.91505 1.00447 1.20586 0.88040 0.99669 1.02312 1.22970 1.03863 0.95218 0.99292 1.22947 0.97655 1.03526 0.96585 1.22158 0.99012 0.78087 1.00829 1.21924 0.96220 0.99071 0.98558 1.20957 0.97642 0.87080 0.92664 0.93531 0.89346 0.96198 0.92058 0.93017 0.90466 0.89742 0.91277 0.91411 0.81276 0.84181 0.85589 0.88835 0.88745 0.88701 0.88988 0.91009 0.90443 0.93292 0.91813 0.92735 0.96330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.86 9.57 -15.06 -0.14 -7.01 16 8 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -14.35 2.98 -172.16 -0.51 -14.86 16 10 C 0.17 3.90 5.04 -3.64 -0.02 3.88 16 11 C -0.13 -2.24 4.71 -26.94 -0.13 -2.37 16 12 C -0.05 -0.83 0.53 -154.09 -0.08 -0.91 16 13 C -0.12 -1.40 6.00 -24.75 -0.15 -1.55 16 14 C 0.09 0.90 4.95 -2.31 -0.01 0.89 16 15 N -0.62 -8.88 3.33 -172.07 -0.57 -9.45 16 16 C 0.60 9.58 7.81 -12.85 -0.10 9.47 16 17 O -0.52 -10.12 15.20 5.20 0.08 -10.04 16 18 C -0.04 -0.55 6.83 -81.98 -0.56 -1.11 16 19 N -0.54 -5.13 5.37 -9.39 -0.05 -5.18 16 20 H 0.42 3.01 5.31 -40.82 -0.22 2.79 16 21 C 0.02 0.14 11.89 -16.91 -0.20 -0.06 16 22 C -0.21 -2.05 10.15 -39.98 -0.41 -2.45 16 23 C -0.05 -0.58 5.87 -104.16 -0.61 -1.19 16 24 C -0.09 -1.11 5.66 -91.77 -0.52 -1.63 16 25 C -0.18 -1.71 10.04 -26.70 -0.27 -1.98 16 26 C -0.17 -1.79 10.24 -26.70 -0.27 -2.06 16 27 C 0.12 2.00 5.06 -3.31 -0.02 1.98 16 28 C -0.12 -1.88 4.78 -26.94 -0.13 -2.01 16 29 C 0.14 2.90 6.22 -3.65 -0.02 2.88 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.09 2.31 6.03 -51.93 -0.31 2.00 16 32 H 0.02 0.49 7.48 -51.93 -0.39 0.10 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 35 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 36 H 0.08 0.82 8.01 -51.93 -0.42 0.40 16 37 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 38 H 0.07 0.57 6.14 -51.93 -0.32 0.25 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 1.11 7.25 -52.48 -0.38 0.73 16 41 H 0.13 1.89 6.59 -51.93 -0.34 1.55 16 42 H 0.09 0.79 7.03 -51.93 -0.36 0.42 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 1.31 7.59 -51.93 -0.39 0.92 16 47 H 0.08 1.45 6.08 -51.93 -0.32 1.14 16 48 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 50 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 51 H 0.02 0.40 6.53 -51.93 -0.34 0.06 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -32.26 387.23 -11.25 -43.51 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.90 Total: 4.34 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.72 Total: -5.22 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.52 Total: -54.91 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.26 -11.25 -43.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040721925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.770 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds