Wall clock time and date at job start Wed Apr 1 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48509 * 109.46834 * 90.00247 * 3 2 1 5 5 H 1.48503 * 109.47035 * 209.99759 * 3 2 1 6 6 H 1.48493 * 109.47451 * 330.00326 * 3 2 1 7 7 C 1.38810 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.47120 * 125.76972 * 359.68652 * 9 7 2 11 11 C 1.54542 * 107.26844 * 182.48056 * 10 9 7 12 12 C 1.54421 * 102.36146 * 22.03012 * 11 10 9 13 13 H 1.09001 * 110.71697 * 80.35137 * 12 11 10 14 14 C 1.48208 * 125.76724 * 180.02562 * 9 7 2 15 15 H 1.09001 * 111.52979 * 32.95144 * 14 9 7 16 16 C 1.53014 * 107.11658 * 270.83579 * 14 9 7 17 17 C 1.52740 * 110.79740 * 191.91641 * 16 14 9 18 18 C 1.53465 * 108.44133 * 63.77755 * 17 16 14 19 19 N 1.45120 * 111.60994 * 203.20629 * 12 11 10 20 20 C 1.34781 * 119.57604 * 248.68938 * 19 12 11 21 21 O 1.21620 * 119.99975 * 354.49784 * 20 19 12 22 22 C 1.47254 * 119.99757 * 174.50111 * 20 19 12 23 23 C 1.46693 * 126.94579 * 320.32206 * 22 20 19 24 24 C 1.34488 * 106.33477 * 179.83112 * 23 22 20 25 25 N 1.36447 * 108.85401 * 0.44068 * 24 23 22 26 26 H 0.96997 * 124.84962 * 179.69377 * 25 24 23 27 27 C 1.34660 * 110.29884 * 359.70666 * 25 24 23 28 28 C 1.50708 * 125.79907 * 180.02562 * 27 25 24 29 29 C 1.53776 * 113.61401 * 37.47419 * 28 27 25 30 30 C 1.53781 * 87.08162 * 220.01820 * 29 28 27 31 31 C 1.53776 * 113.61119 * 299.97760 * 28 27 25 32 32 H 0.97005 * 119.99867 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.88603 * 302.03429 * 10 9 7 34 34 H 1.09007 * 109.88313 * 63.20444 * 10 9 7 35 35 H 1.09002 * 111.03085 * 263.73437 * 11 10 9 36 36 H 1.09003 * 110.83976 * 140.23636 * 11 10 9 37 37 H 1.09001 * 109.21010 * 312.25732 * 16 14 9 38 38 H 1.09002 * 109.20857 * 71.57550 * 16 14 9 39 39 H 1.09003 * 109.63828 * 183.46225 * 17 16 14 40 40 H 1.08999 * 109.63870 * 303.87534 * 17 16 14 41 41 H 1.09002 * 109.83254 * 61.44417 * 18 17 16 42 42 H 1.08995 * 109.83360 * 182.39731 * 18 17 16 43 43 H 1.07998 * 126.82975 * 0.02562 * 23 22 20 44 44 H 1.07998 * 125.57182 * 180.14559 * 24 23 22 45 45 H 1.09001 * 112.84639 * 168.78003 * 28 27 25 46 46 H 1.09000 * 113.61356 * 334.56817 * 29 28 27 47 47 H 1.08999 * 113.61051 * 105.46818 * 29 28 27 48 48 H 1.08999 * 113.61237 * 270.88970 * 30 29 28 49 49 H 1.08999 * 113.61295 * 139.98016 * 30 29 28 50 50 H 1.09003 * 113.61369 * 254.52807 * 31 28 27 51 51 H 1.08994 * 113.61999 * 25.43430 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4002 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1382 -2.5359 0.0043 11 6 -0.4462 -4.0491 0.0643 12 6 0.8582 -4.6288 0.6536 13 1 0.8809 -4.5043 1.7362 14 6 1.9338 -3.7395 -0.0017 15 1 2.8735 -3.7553 0.5505 16 6 2.1392 -4.1408 -1.4640 17 6 2.4854 -5.6242 -1.5758 18 6 1.2887 -6.4414 -1.0707 19 7 1.0225 -6.0297 0.3123 20 6 0.9294 -6.9651 1.2782 21 8 0.8090 -6.6288 2.4408 22 6 0.9734 -8.3942 0.9258 23 6 0.3427 -9.0366 -0.2323 24 6 0.6488 -10.3437 -0.1531 25 7 1.4057 -10.5525 0.9628 26 1 1.7503 -11.4140 1.2457 27 6 1.6056 -9.3918 1.6156 28 6 2.3927 -9.2210 2.8894 29 6 3.6429 -10.1132 2.9653 30 6 3.2970 -10.3367 4.4470 31 6 1.8370 -10.0339 4.0705 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5580 -2.0352 0.8768 34 1 -0.5575 -2.1103 -0.9075 35 1 -0.6329 -4.4502 -0.9319 36 1 -1.2908 -4.2471 0.7243 37 1 1.2241 -3.9429 -2.0221 38 1 2.9515 -3.5499 -1.8873 39 1 2.6877 -5.8758 -2.6169 40 1 3.3643 -5.8421 -0.9689 41 1 0.4153 -6.2402 -1.6911 42 1 1.5276 -7.5044 -1.1008 43 1 -0.2472 -8.5550 -0.9982 44 1 0.3415 -11.1047 -0.8552 45 1 2.5853 -8.1756 3.1309 46 1 3.5721 -11.0164 2.3593 47 1 4.5760 -9.5712 2.8117 48 1 3.7382 -9.5967 5.1147 49 1 3.4578 -11.3610 4.7831 50 1 1.3123 -9.4280 4.8092 51 1 1.2727 -10.9155 3.7667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049724321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:08 Heat of formation + Delta-G solvation = 63.330843 kcal Electronic energy + Delta-G solvation = -31309.329566 eV Core-core repulsion = 27403.685069 eV Total energy + Delta-G solvation = -3905.644497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62606 -39.85055 -38.43134 -37.59120 -35.09741 -32.28357 -32.23200 -31.01510 -29.92949 -28.86997 -28.05321 -25.90095 -25.60670 -24.52355 -24.17146 -22.33006 -21.81567 -21.07351 -19.96857 -19.67839 -19.06084 -18.14473 -17.70298 -16.78364 -16.27975 -15.75100 -15.32111 -14.88175 -14.71264 -14.67938 -14.26265 -14.18658 -13.72773 -13.56780 -13.39505 -13.10488 -12.83961 -12.80483 -12.69167 -12.46109 -12.36042 -12.25028 -11.94232 -11.77840 -11.26157 -10.98586 -10.94099 -10.84298 -10.72140 -10.70108 -10.56425 -10.55060 -10.37762 -10.02521 -9.95972 -9.56115 -9.49519 -9.42806 -8.78545 -8.55373 -8.30001 -8.01929 -6.78342 -5.64734 -2.98362 1.84721 2.36590 2.97432 3.38585 3.44646 3.49297 3.51024 3.60502 4.29567 4.37750 4.42454 4.54676 4.69020 4.81907 4.91496 5.02829 5.20166 5.29524 5.32568 5.37694 5.40129 5.43862 5.51463 5.54932 5.59650 5.62900 5.69799 5.72352 5.76180 5.78024 5.84598 5.89663 5.98876 6.03068 6.15576 6.19533 6.25293 6.34706 6.43133 6.47612 6.62137 6.66314 6.72674 6.85561 6.88660 7.13427 7.21393 7.30650 7.62330 7.69267 7.85516 7.91373 8.30478 8.63915 9.27264 9.87069 10.53873 11.46520 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.002849 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.208435 B = 9825.745304 C =10414.880122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.132 3.868 13 H 0.101 0.899 14 C 0.156 3.844 15 H 0.058 0.942 16 C -0.129 4.129 17 C -0.133 4.133 18 C 0.105 3.895 19 N -0.586 5.586 20 C 0.585 3.415 21 O -0.549 6.549 22 C -0.215 4.215 23 C -0.167 4.167 24 C -0.018 4.018 25 N -0.552 5.552 26 H 0.412 0.588 27 C 0.104 3.896 28 C -0.046 4.046 29 C -0.139 4.139 30 C -0.141 4.141 31 C -0.130 4.130 32 H 0.251 0.749 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.146 0.854 44 H 0.168 0.832 45 H 0.121 0.879 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -26.102 0.064 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.056 3.944 11 C -0.190 4.190 12 C 0.028 3.972 13 H 0.119 0.881 14 C 0.048 3.952 15 H 0.076 0.924 16 C -0.169 4.169 17 C -0.172 4.172 18 C -0.018 4.018 19 N -0.317 5.317 20 C 0.374 3.626 21 O -0.428 6.428 22 C -0.225 4.225 23 C -0.191 4.191 24 C -0.145 4.145 25 N -0.148 5.148 26 H 0.248 0.752 27 C -0.013 4.013 28 C -0.066 4.066 29 C -0.176 4.176 30 C -0.178 4.178 31 C -0.168 4.168 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.164 0.836 44 H 0.185 0.815 45 H 0.139 0.861 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.702 -25.747 0.672 26.021 hybrid contribution 0.418 0.551 -0.247 0.734 sum 4.119 -25.197 0.425 25.535 Atomic orbital electron populations 1.69967 1.04833 1.24931 1.57173 1.24787 0.95696 0.97552 1.02418 0.86133 0.78537 0.83635 0.77537 1.21658 1.20773 1.21771 1.19034 0.90394 0.82271 1.43519 0.90503 1.44722 1.01512 0.99344 1.86748 1.21152 0.84292 0.87803 1.01115 1.23105 0.96513 0.99676 0.99755 1.21721 0.96264 0.78214 1.01010 0.88122 1.21346 0.94573 0.86108 0.93208 0.92403 1.22106 1.01759 0.93239 0.99785 1.21927 0.97715 0.97085 1.00435 1.22003 0.97827 0.99797 0.82195 1.47393 1.69946 1.06349 1.08015 1.17506 0.75901 0.84387 0.84768 1.90746 1.50786 1.82339 1.18959 1.20185 1.09757 0.92857 0.99664 1.22071 1.05006 0.92972 0.99081 1.21680 1.02035 0.98134 0.92696 1.41418 1.43116 1.09030 1.21204 0.75217 1.19900 1.01194 0.84759 0.95414 1.21328 0.93983 1.01744 0.89497 1.23009 0.98296 0.99319 0.97024 1.22835 0.96623 1.01953 0.96410 1.22938 0.96578 0.99582 0.97721 0.93815 0.93153 0.94120 0.92304 0.92163 0.91942 0.92386 0.91636 0.92046 0.91849 0.88886 0.83616 0.81494 0.86077 0.90807 0.90704 0.89593 0.91338 0.90431 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.39 10.33 55.49 0.57 -26.82 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.22 -6.27 10.29 -15.06 -0.16 -6.43 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -15.36 2.91 -162.22 -0.47 -15.83 16 10 C 0.18 4.51 5.19 -2.89 -0.02 4.50 16 11 C -0.15 -3.05 6.08 -25.18 -0.15 -3.20 16 12 C 0.13 2.63 3.12 -67.31 -0.21 2.42 16 13 H 0.10 2.26 6.93 -51.93 -0.36 1.90 16 14 C 0.16 3.31 3.59 -66.36 -0.24 3.07 16 15 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.13 -2.35 5.10 -26.86 -0.14 -2.49 16 17 C -0.13 -1.87 6.11 -26.62 -0.16 -2.04 16 18 C 0.10 1.42 5.17 -3.67 -0.02 1.40 16 19 N -0.59 -9.81 2.73 -166.41 -0.45 -10.26 16 20 C 0.59 10.10 7.30 -12.59 -0.09 10.00 16 21 O -0.55 -11.26 15.26 5.26 0.08 -11.18 16 22 C -0.21 -2.94 5.26 -103.35 -0.54 -3.49 16 23 C -0.17 -1.80 8.66 -37.49 -0.32 -2.12 16 24 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 25 N -0.55 -4.42 5.72 -9.10 -0.05 -4.48 16 26 H 0.41 2.05 8.21 -40.82 -0.34 1.72 16 27 C 0.10 1.18 6.22 -81.88 -0.51 0.67 16 28 C -0.05 -0.49 3.88 -90.96 -0.35 -0.85 16 29 C -0.14 -1.08 7.62 -25.92 -0.20 -1.27 16 30 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 31 C -0.13 -1.17 7.63 -25.92 -0.20 -1.36 16 32 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.05 1.40 7.31 -51.93 -0.38 1.02 16 34 H 0.04 1.10 7.59 -51.93 -0.39 0.71 16 35 H 0.06 1.10 6.81 -51.93 -0.35 0.74 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.21 7.13 -51.93 -0.37 0.84 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 42 H 0.09 1.10 4.75 -51.93 -0.25 0.85 16 43 H 0.15 1.43 7.47 -52.49 -0.39 1.03 16 44 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.12 1.63 7.04 -51.93 -0.37 1.26 16 46 H 0.07 0.45 7.21 -51.93 -0.37 0.08 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -33.32 388.06 -11.47 -44.79 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.16 Total: 3.64 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -3.81 Total: -3.10 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.41 Total: -57.39 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.32 -11.47 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049724321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.116 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds