Wall clock time and date at job start Wed Apr 1 2020 02:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48509 * 109.46834 * 90.00247 * 3 2 1 5 5 H 1.48503 * 109.47035 * 209.99759 * 3 2 1 6 6 H 1.48493 * 109.47451 * 330.00326 * 3 2 1 7 7 C 1.38810 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00003 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.47120 * 125.76972 * 359.68652 * 9 7 2 11 11 C 1.54542 * 107.26844 * 182.48056 * 10 9 7 12 12 C 1.54421 * 102.36146 * 22.03012 * 11 10 9 13 13 H 1.09001 * 110.71697 * 80.35137 * 12 11 10 14 14 C 1.48208 * 125.76724 * 180.02562 * 9 7 2 15 15 H 1.09001 * 111.52979 * 32.95144 * 14 9 7 16 16 C 1.53014 * 107.11658 * 270.83579 * 14 9 7 17 17 C 1.52740 * 110.79740 * 191.91641 * 16 14 9 18 18 C 1.53465 * 108.44133 * 63.77755 * 17 16 14 19 19 N 1.45120 * 111.60994 * 203.20629 * 12 11 10 20 20 C 1.34781 * 119.57604 * 248.68938 * 19 12 11 21 21 O 1.21620 * 119.99975 * 354.49784 * 20 19 12 22 22 C 1.47254 * 119.99757 * 174.50111 * 20 19 12 23 23 C 1.46693 * 126.94579 * 320.32206 * 22 20 19 24 24 C 1.34488 * 106.33477 * 179.83112 * 23 22 20 25 25 N 1.36447 * 108.85401 * 0.44068 * 24 23 22 26 26 H 0.96997 * 124.84962 * 179.69377 * 25 24 23 27 27 C 1.34660 * 110.29884 * 359.70666 * 25 24 23 28 28 C 1.50708 * 125.79907 * 180.02562 * 27 25 24 29 29 C 1.53776 * 113.61401 * 37.47419 * 28 27 25 30 30 C 1.53781 * 87.08162 * 220.01820 * 29 28 27 31 31 C 1.53776 * 113.61119 * 299.97760 * 28 27 25 32 32 H 0.97005 * 119.99867 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.88603 * 302.03429 * 10 9 7 34 34 H 1.09007 * 109.88313 * 63.20444 * 10 9 7 35 35 H 1.09002 * 111.03085 * 263.73437 * 11 10 9 36 36 H 1.09003 * 110.83976 * 140.23636 * 11 10 9 37 37 H 1.09001 * 109.21010 * 312.25732 * 16 14 9 38 38 H 1.09002 * 109.20857 * 71.57550 * 16 14 9 39 39 H 1.09003 * 109.63828 * 183.46225 * 17 16 14 40 40 H 1.08999 * 109.63870 * 303.87534 * 17 16 14 41 41 H 1.09002 * 109.83254 * 61.44417 * 18 17 16 42 42 H 1.08995 * 109.83360 * 182.39731 * 18 17 16 43 43 H 1.07998 * 126.82975 * 0.02562 * 23 22 20 44 44 H 1.07998 * 125.57182 * 180.14559 * 24 23 22 45 45 H 1.09001 * 112.84639 * 168.78003 * 28 27 25 46 46 H 1.09000 * 113.61356 * 334.56817 * 29 28 27 47 47 H 1.08999 * 113.61051 * 105.46818 * 29 28 27 48 48 H 1.08999 * 113.61237 * 270.88970 * 30 29 28 49 49 H 1.08999 * 113.61295 * 139.98016 * 30 29 28 50 50 H 1.09003 * 113.61369 * 254.52807 * 31 28 27 51 51 H 1.08994 * 113.61999 * 25.43430 * 31 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4002 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1382 -2.5359 0.0043 11 6 -0.4462 -4.0491 0.0643 12 6 0.8582 -4.6288 0.6536 13 1 0.8809 -4.5043 1.7362 14 6 1.9338 -3.7395 -0.0017 15 1 2.8735 -3.7553 0.5505 16 6 2.1392 -4.1408 -1.4640 17 6 2.4854 -5.6242 -1.5758 18 6 1.2887 -6.4414 -1.0707 19 7 1.0225 -6.0297 0.3123 20 6 0.9294 -6.9651 1.2782 21 8 0.8090 -6.6288 2.4408 22 6 0.9734 -8.3942 0.9258 23 6 0.3427 -9.0366 -0.2323 24 6 0.6488 -10.3437 -0.1531 25 7 1.4057 -10.5525 0.9628 26 1 1.7503 -11.4140 1.2457 27 6 1.6056 -9.3918 1.6156 28 6 2.3927 -9.2210 2.8894 29 6 3.6429 -10.1132 2.9653 30 6 3.2970 -10.3367 4.4470 31 6 1.8370 -10.0339 4.0705 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5580 -2.0352 0.8768 34 1 -0.5575 -2.1103 -0.9075 35 1 -0.6329 -4.4502 -0.9319 36 1 -1.2908 -4.2471 0.7243 37 1 1.2241 -3.9429 -2.0221 38 1 2.9515 -3.5499 -1.8873 39 1 2.6877 -5.8758 -2.6169 40 1 3.3643 -5.8421 -0.9689 41 1 0.4153 -6.2402 -1.6911 42 1 1.5276 -7.5044 -1.1008 43 1 -0.2472 -8.5550 -0.9982 44 1 0.3415 -11.1047 -0.8552 45 1 2.5853 -8.1756 3.1309 46 1 3.5721 -11.0164 2.3593 47 1 4.5760 -9.5712 2.8117 48 1 3.7382 -9.5967 5.1147 49 1 3.4578 -11.3610 4.7831 50 1 1.3123 -9.4280 4.8092 51 1 1.2727 -10.9155 3.7667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049724321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:07 Heat of formation + Delta-G solvation = 43.864722 kcal Electronic energy + Delta-G solvation = -31310.173680 eV Core-core repulsion = 27403.685069 eV Total energy + Delta-G solvation = -3906.488611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.46808 -41.26640 -39.18324 -39.08389 -36.70728 -34.20647 -33.68156 -32.07953 -30.77780 -30.60919 -29.69097 -26.82626 -26.55585 -26.08876 -25.57359 -23.63515 -23.11579 -21.93260 -21.81245 -20.53227 -20.25839 -19.25937 -18.84480 -18.64467 -17.55607 -16.78605 -16.67861 -16.45472 -16.13976 -15.86331 -15.40035 -15.29529 -15.07277 -14.98110 -14.79068 -14.31660 -14.07305 -13.89318 -13.76521 -13.53734 -13.43632 -13.36856 -13.27012 -13.09150 -12.99384 -12.82280 -12.59229 -12.33919 -12.24816 -12.05557 -11.92069 -11.69190 -11.58613 -11.52376 -11.39414 -11.24403 -11.17768 -10.81828 -10.71585 -9.68381 -9.46963 -9.02251 -8.88700 -7.83739 -5.19860 0.88406 1.44708 1.47439 1.55742 1.61327 1.98557 2.34332 2.45163 2.52648 3.33681 3.55504 3.60314 3.66419 3.75416 3.78264 3.90065 3.98930 4.03945 4.09622 4.18886 4.20731 4.22906 4.38599 4.40443 4.58803 4.59400 4.64324 4.69116 4.70005 4.75665 4.80863 4.84119 4.87267 5.00162 5.03593 5.04945 5.07479 5.08599 5.11441 5.20441 5.30834 5.37349 5.40604 5.49900 5.56447 5.64088 5.71852 5.73103 5.86226 6.08192 6.18160 6.56992 6.74372 7.08870 7.31850 7.74852 8.41280 9.26438 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.002849 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.208435 B = 9825.745304 C =10414.880122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.267 1.267 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.618 5.618 10 C 0.194 3.806 11 C -0.132 4.132 12 C 0.147 3.853 13 H 0.065 0.935 14 C 0.152 3.848 15 H 0.045 0.955 16 C -0.117 4.117 17 C -0.122 4.122 18 C 0.105 3.895 19 N -0.586 5.586 20 C 0.580 3.420 21 O -0.597 6.597 22 C -0.254 4.254 23 C -0.188 4.188 24 C 0.011 3.989 25 N -0.534 5.534 26 H 0.430 0.570 27 C 0.106 3.894 28 C -0.062 4.062 29 C -0.126 4.126 30 C -0.133 4.133 31 C -0.129 4.129 32 H 0.246 0.754 33 H 0.009 0.991 34 H 0.014 0.986 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.121 0.879 43 H 0.155 0.845 44 H 0.212 0.788 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.055 0.945 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 -30.405 -1.948 30.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.192 1.192 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.098 0.902 9 N -0.343 5.343 10 C 0.068 3.932 11 C -0.172 4.172 12 C 0.041 3.959 13 H 0.083 0.917 14 C 0.045 3.955 15 H 0.063 0.937 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.016 4.016 19 N -0.316 5.316 20 C 0.371 3.629 21 O -0.480 6.480 22 C -0.264 4.264 23 C -0.211 4.211 24 C -0.117 4.117 25 N -0.131 5.131 26 H 0.270 0.730 27 C -0.013 4.013 28 C -0.081 4.081 29 C -0.163 4.163 30 C -0.170 4.170 31 C -0.167 4.167 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.032 0.968 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.139 0.861 43 H 0.173 0.827 44 H 0.229 0.771 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.074 0.926 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.908 -30.125 -1.370 30.553 hybrid contribution 0.065 1.825 0.445 1.880 sum 4.972 -28.300 -0.925 28.748 Atomic orbital electron populations 1.70189 1.06289 1.25223 1.58384 1.25646 0.96614 1.00939 1.02733 0.85069 0.77722 0.79149 0.77333 1.21623 1.19202 1.21933 1.19404 0.90869 0.83498 1.42769 0.90155 1.44976 1.01998 1.00568 1.86784 1.20825 0.84016 0.90477 0.97833 1.22910 0.96802 0.96218 1.01221 1.21207 0.95444 0.80498 0.98733 0.91722 1.21524 0.94050 0.84460 0.95468 0.93734 1.21887 1.00958 0.96386 0.96440 1.21888 0.97851 0.93563 1.02760 1.22274 0.98066 1.01215 0.80057 1.47412 1.69936 1.04574 1.09667 1.18185 0.74594 0.86094 0.83989 1.90713 1.52888 1.83341 1.21021 1.20046 1.12918 0.90928 1.02482 1.22218 1.06134 0.94072 0.98725 1.22306 0.99366 0.97958 0.92080 1.41407 1.42233 1.08783 1.20641 0.72984 1.19872 1.00635 0.85538 0.95221 1.21279 0.96281 1.00321 0.90254 1.23005 0.96440 0.99345 0.97545 1.22799 0.94970 1.03053 0.96228 1.22969 0.97709 0.99521 0.96520 0.94428 0.97276 0.96807 0.89867 0.91768 0.92874 0.93382 0.87980 0.92142 0.90545 0.86137 0.82742 0.77093 0.90181 0.88102 0.91132 0.90470 0.88955 0.92629 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.30 10.33 21.65 0.22 -59.08 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 7 C -0.24 -13.76 10.29 84.03 0.86 -12.90 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -33.33 2.91 -667.14 -1.94 -35.28 16 10 C 0.19 10.26 5.19 86.79 0.45 10.71 16 11 C -0.13 -5.53 6.08 31.60 0.19 -5.34 16 12 C 0.15 6.12 3.12 46.13 0.14 6.26 16 13 H 0.06 3.15 6.93 -2.39 -0.02 3.13 16 14 C 0.15 6.70 3.59 45.07 0.16 6.86 16 15 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.12 -4.22 5.10 30.51 0.16 -4.07 16 17 C -0.12 -3.15 6.11 30.66 0.19 -2.96 16 18 C 0.10 2.60 5.17 86.49 0.45 3.05 16 19 N -0.59 -19.70 2.73 -798.64 -2.18 -21.88 16 20 C 0.58 20.53 7.30 86.61 0.63 21.16 16 21 O -0.60 -26.26 15.26 -4.09 -0.06 -26.32 16 22 C -0.25 -6.64 5.26 -19.04 -0.10 -6.74 16 23 C -0.19 -3.40 8.66 23.62 0.20 -3.19 16 24 C 0.01 0.12 11.89 83.12 0.99 1.11 16 25 N -0.53 -6.23 5.72 -182.71 -1.04 -7.27 16 26 H 0.43 1.98 8.21 -92.71 -0.76 1.22 16 27 C 0.11 2.20 6.22 41.78 0.26 2.46 16 28 C -0.06 -1.30 3.88 -11.01 -0.04 -1.34 16 29 C -0.13 -1.68 7.62 31.12 0.24 -1.44 16 30 C -0.13 -1.72 8.08 31.12 0.25 -1.47 16 31 C -0.13 -2.21 7.63 31.12 0.24 -1.97 16 32 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 33 H 0.01 0.54 7.31 -2.39 -0.02 0.52 16 34 H 0.01 0.79 7.59 -2.38 -0.02 0.77 16 35 H 0.08 3.07 6.81 -2.39 -0.02 3.05 16 36 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.05 2.02 7.13 -2.39 -0.02 2.00 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.08 1.74 7.53 -2.39 -0.02 1.72 16 42 H 0.12 2.43 4.75 -2.39 -0.01 2.42 16 43 H 0.15 2.45 7.47 -2.91 -0.02 2.42 16 44 H 0.21 0.47 8.06 -2.91 -0.02 0.44 16 45 H 0.08 2.35 7.04 -2.39 -0.02 2.33 16 46 H 0.10 0.79 7.21 -2.39 -0.02 0.78 16 47 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 Total: -1.00 -80.05 388.06 2.94 -77.11 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.18 Total: 16.57 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.74 Total: 6.73 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -4.95 Total: -123.51 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -80.05 2.94 -77.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049724321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.977 kcal (2) G-P(sol) polarization free energy of solvation -80.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds