Wall clock time and date at job start Wed Apr 1 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29826 * 118.55343 * 2 1 4 4 C 1.50145 * 123.28602 * 180.36874 * 3 2 1 5 5 N 1.46838 * 110.27716 * 342.95470 * 4 3 2 6 6 C 1.46897 * 110.99815 * 287.53491 * 5 4 3 7 7 C 1.53003 * 109.47421 * 293.95320 * 6 5 4 8 8 N 1.46496 * 109.47215 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99791 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99893 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00183 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00471 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47542 * 179.97438 * 12 11 9 14 14 C 1.38636 * 119.75024 * 269.72831 * 13 12 11 15 15 C 1.37614 * 120.25104 * 179.71881 * 14 13 12 16 16 C 1.40718 * 119.74206 * 0.56909 * 15 14 13 17 17 C 1.41400 * 120.24445 * 179.67812 * 16 15 14 18 18 H 1.08001 * 120.00183 * 204.40540 * 17 16 15 19 19 C 1.39946 * 119.99820 * 24.41239 * 17 16 15 20 20 N 1.30821 * 119.99960 * 17.84215 * 19 17 16 21 21 Si 1.86795 * 119.99880 * 197.84654 * 19 17 16 22 22 H 1.48501 * 109.47250 * 89.99710 * 21 19 17 23 23 H 1.48495 * 109.47203 * 209.99541 * 21 19 17 24 24 H 1.48503 * 109.47134 * 329.99924 * 21 19 17 25 25 C 1.40720 * 119.51432 * 359.70548 * 16 15 14 26 26 C 1.37618 * 119.74112 * 359.97438 * 25 16 15 27 27 C 1.47233 * 110.21851 * 50.90943 * 5 4 3 28 28 C 1.50310 * 118.55763 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47133 * 270.01562 * 1 2 3 30 30 H 1.08994 * 109.47392 * 30.02090 * 1 2 3 31 31 H 1.09005 * 109.46764 * 150.02080 * 1 2 3 32 32 H 1.08003 * 118.35753 * 0.39296 * 3 2 1 33 33 H 1.09010 * 109.33252 * 103.19956 * 4 3 2 34 34 H 1.08994 * 109.34001 * 222.70275 * 4 3 2 35 35 H 1.09004 * 109.47515 * 53.95306 * 6 5 4 36 36 H 1.08998 * 109.47258 * 173.95280 * 6 5 4 37 37 H 1.09004 * 109.46764 * 300.00445 * 7 6 5 38 38 H 1.08998 * 109.46938 * 59.99763 * 7 6 5 39 39 H 0.96996 * 120.00374 * 0.02562 * 8 7 6 40 40 H 0.97002 * 120.00016 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.46325 * 299.99725 * 12 11 9 42 42 H 1.09002 * 109.47117 * 59.99363 * 12 11 9 43 43 H 1.08003 * 119.87152 * 359.97095 * 14 13 12 44 44 H 1.07997 * 120.13083 * 180.26985 * 15 14 13 45 45 H 0.97004 * 119.99515 * 180.02562 * 20 19 17 46 46 H 1.07994 * 120.12874 * 179.97438 * 25 16 15 47 47 H 1.08003 * 119.87483 * 180.02562 * 26 25 16 48 48 H 1.09000 * 109.63059 * 171.51724 * 27 5 4 49 49 H 1.08999 * 109.64051 * 50.90650 * 27 5 4 50 50 H 1.09004 * 109.42547 * 283.57541 * 28 2 1 51 51 H 1.08998 * 109.43099 * 43.42786 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1275 1.1404 0.0000 4 6 3.6238 1.2642 -0.0081 5 7 4.2418 -0.0074 0.3883 6 6 4.0641 -0.2536 1.8255 7 6 4.8437 0.7940 2.6227 8 7 4.6660 0.5488 4.0561 9 6 5.2655 1.3525 4.9566 10 8 5.9535 2.2814 4.5795 11 7 5.1025 1.1267 6.2753 12 6 5.7537 2.0006 7.2543 13 6 5.4133 1.5364 8.6469 14 6 4.2945 2.0458 9.2877 15 6 3.9708 1.6248 10.5573 16 6 4.7872 0.6824 11.2096 17 6 4.4684 0.2475 12.5167 18 1 5.2438 -0.1394 13.1613 19 6 3.1480 0.3184 12.9751 20 7 2.1651 0.4460 12.1213 21 14 2.7891 0.2308 14.8062 22 1 2.7991 1.6010 15.3787 23 1 1.4551 -0.3853 15.0202 24 1 3.8279 -0.5928 15.4754 25 6 5.9236 0.1764 10.5518 26 6 6.2243 0.6069 9.2797 27 6 3.6861 -1.1135 -0.4088 28 6 2.2255 -1.3202 0.0006 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.5379 2.0452 0.0065 33 1 3.9584 1.5312 -1.0106 34 1 3.9251 2.0451 0.6901 35 1 3.0056 -0.1881 2.0773 36 1 4.4354 -1.2483 2.0724 37 1 5.9023 0.7285 2.3710 38 1 4.4725 1.7887 2.3759 39 1 4.1174 -0.1924 4.3569 40 1 4.5533 0.3859 6.5762 41 1 6.8338 1.9636 7.1124 42 1 5.4040 3.0239 7.1171 43 1 3.6722 2.7729 8.7870 44 1 3.0963 2.0197 11.0529 45 1 1.2500 0.4955 12.4391 46 1 6.5573 -0.5468 11.0433 47 1 7.0957 0.2196 8.7726 48 1 4.2529 -2.0244 -0.2163 49 1 3.7377 -0.8635 -1.4685 50 1 2.1869 -1.7535 1.0001 51 1 1.7432 -1.9959 -0.7057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573915844.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:34 Heat of formation + Delta-G solvation = -0.651913 kcal Electronic energy + Delta-G solvation = -28469.871726 eV Core-core repulsion = 24561.452729 eV Total energy + Delta-G solvation = -3908.418997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.29501 -39.51822 -37.71740 -35.57920 -34.61048 -33.94601 -33.37511 -31.39097 -30.55028 -29.56002 -29.31231 -27.43278 -26.52146 -24.42433 -23.83007 -23.14844 -21.52605 -21.07332 -20.64618 -20.07800 -18.35467 -17.42216 -17.38819 -16.70184 -16.19273 -15.64276 -15.45077 -15.34219 -15.00577 -14.77102 -14.36918 -14.25553 -13.96259 -13.81069 -13.75575 -13.54248 -13.31712 -13.01929 -12.74227 -12.51901 -12.32272 -12.23641 -12.04377 -12.02416 -11.94975 -11.69530 -11.66931 -11.24129 -11.16037 -11.04454 -11.00230 -10.70062 -10.45442 -9.98076 -9.68781 -9.47908 -9.24072 -9.17491 -9.02707 -8.69501 -8.42097 -7.57156 -7.45318 -6.87624 -4.46885 1.78679 2.50545 2.89712 2.98574 3.02001 3.04623 3.17722 3.52320 3.71823 3.84924 4.30981 4.44805 4.46776 4.56402 4.69586 4.73062 4.78206 4.89762 5.07409 5.12873 5.17280 5.27118 5.30542 5.34991 5.44717 5.47521 5.52747 5.60381 5.63120 5.75745 5.81093 5.88487 5.97439 6.15532 6.25527 6.32961 6.37070 6.47249 6.57250 6.62130 6.74180 6.86973 6.94197 6.97770 7.17373 7.22194 7.27185 7.51443 7.74952 7.95626 8.02510 8.19261 8.34771 8.53761 8.78549 8.86490 8.90943 10.06376 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.001751 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.256918 B =15987.429054 C =17090.514644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.074 3.926 5 N -0.523 5.523 6 C 0.039 3.961 7 C 0.144 3.856 8 N -0.752 5.752 9 C 0.700 3.300 10 O -0.601 6.601 11 N -0.734 5.734 12 C 0.203 3.797 13 C -0.243 4.243 14 C -0.081 4.081 15 C -0.170 4.170 16 C 0.116 3.884 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.788 5.788 21 Si 0.910 3.090 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.230 4.230 26 C -0.069 4.069 27 C 0.054 3.946 28 C -0.122 4.122 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.394 0.606 40 H 0.396 0.604 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.282 0.718 46 H 0.093 0.907 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 -3.590 -21.719 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.127 4.127 3 C -0.211 4.211 4 C -0.054 4.054 5 N -0.245 5.245 6 C -0.089 4.089 7 C 0.019 3.981 8 N -0.409 5.409 9 C 0.400 3.600 10 O -0.480 6.480 11 N -0.389 5.389 12 C 0.081 3.919 13 C -0.245 4.245 14 C -0.100 4.100 15 C -0.189 4.189 16 C 0.113 3.887 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.413 5.413 21 Si 0.734 3.266 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.249 4.249 26 C -0.088 4.088 27 C -0.074 4.074 28 C -0.161 4.161 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.227 0.773 40 H 0.230 0.770 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.136 0.864 45 H 0.093 0.907 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.095 0.905 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.783 -2.667 -22.170 22.502 hybrid contribution -1.911 -0.840 1.276 2.446 sum -4.694 -3.507 -20.893 21.699 Atomic orbital electron populations 1.20910 0.92287 1.02306 1.02151 1.20965 0.95921 0.94748 1.01020 1.22758 0.97866 0.97818 1.02684 1.21219 0.89216 0.92560 1.02406 1.62590 1.55712 1.02653 1.03555 1.22291 0.99171 0.99596 0.87879 1.21028 1.00806 0.98010 0.78251 1.45025 1.55628 1.34481 1.05791 1.16049 0.80350 0.82338 0.81298 1.90887 1.44519 1.32900 1.79659 1.45716 1.54579 1.35012 1.03573 1.19799 0.95724 0.91968 0.84430 1.19016 1.01567 1.08270 0.95672 1.20569 0.95330 0.98598 0.95486 1.21313 1.02368 1.00049 0.95171 1.17680 0.90157 0.88535 0.92320 1.19667 0.93724 1.36800 0.98535 0.90261 1.25951 0.96017 0.92264 1.00099 1.69821 1.00711 1.34528 1.36242 0.86285 0.78436 0.79541 0.82347 1.19171 1.20268 1.18539 1.20977 1.02559 1.05631 0.95760 1.20420 0.97220 0.96210 0.94976 1.22283 0.92237 0.94665 0.98245 1.21092 0.96960 0.95379 1.02656 0.91554 0.91929 0.91981 0.87403 0.89329 0.89172 0.93410 0.90155 0.90978 0.91878 0.77310 0.77009 0.92628 0.92631 0.89399 0.86390 0.90736 0.88911 0.89336 0.89970 0.90219 0.90541 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.91 36.00 0.36 -0.42 16 2 C -0.13 -0.95 5.25 -100.93 -0.53 -1.47 16 3 C -0.19 -1.51 8.95 -35.96 -0.32 -1.83 16 4 C 0.07 0.59 5.83 -5.28 -0.03 0.55 16 5 N -0.52 -4.30 5.03 -236.12 -1.19 -5.49 16 6 C 0.04 0.33 4.17 -3.82 -0.02 0.32 16 7 C 0.14 1.61 5.63 -4.04 -0.02 1.59 16 8 N -0.75 -9.30 5.56 -65.23 -0.36 -9.67 16 9 C 0.70 11.63 8.57 -86.92 -0.74 10.89 16 10 O -0.60 -12.28 16.34 5.29 0.09 -12.19 16 11 N -0.73 -12.06 5.55 -66.41 -0.37 -12.43 16 12 C 0.20 3.76 5.79 -5.19 -0.03 3.73 16 13 C -0.24 -5.05 5.27 -104.33 -0.55 -5.60 16 14 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 15 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 16 C 0.12 2.97 5.58 -106.82 -0.60 2.37 16 17 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 18 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 19 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.79 -19.58 10.95 55.55 0.61 -18.97 16 21 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.23 -5.41 9.80 -38.87 -0.38 -5.79 16 26 C -0.07 -1.48 9.67 -39.66 -0.38 -1.87 16 27 C 0.05 0.36 6.03 -3.59 -0.02 0.34 16 28 C -0.12 -0.79 5.24 -28.02 -0.15 -0.94 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.38 7.94 -51.93 -0.41 -0.03 16 31 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.11 0.81 7.87 -52.48 -0.41 0.40 16 33 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.09 0.77 6.01 -51.93 -0.31 0.46 16 35 H 0.05 0.42 6.00 -51.93 -0.31 0.11 16 36 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.77 6.33 -51.93 -0.33 0.44 16 39 H 0.39 3.88 8.49 -40.82 -0.35 3.53 16 40 H 0.40 5.97 8.48 -40.82 -0.35 5.63 16 41 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 43 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 44 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 45 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 46 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 47 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 50 H 0.08 0.51 7.13 -51.93 -0.37 0.14 16 51 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 LS Contribution 408.48 15.07 6.16 6.16 Total: -1.00 -28.97 408.48 -12.86 -41.83 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -8.19 Total: 12.98 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -4.57 Total: -15.22 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -1.31 Total: -46.56 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.97 -12.86 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573915844.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.176 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds