Wall clock time and date at job start Wed Apr 1 2020 02:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29826 * 118.55343 * 2 1 4 4 C 1.50145 * 123.28602 * 180.36874 * 3 2 1 5 5 N 1.46838 * 110.27716 * 342.95470 * 4 3 2 6 6 C 1.46897 * 110.99815 * 287.53491 * 5 4 3 7 7 C 1.53003 * 109.47421 * 293.95320 * 6 5 4 8 8 N 1.46496 * 109.47215 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99791 * 179.97438 * 8 7 6 10 10 O 1.21588 * 119.99893 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00183 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00471 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47542 * 179.97438 * 12 11 9 14 14 C 1.38636 * 119.75024 * 269.72831 * 13 12 11 15 15 C 1.37614 * 120.25104 * 179.71881 * 14 13 12 16 16 C 1.40718 * 119.74206 * 0.56909 * 15 14 13 17 17 C 1.41400 * 120.24445 * 179.67812 * 16 15 14 18 18 H 1.08001 * 120.00183 * 204.40540 * 17 16 15 19 19 C 1.39946 * 119.99820 * 24.41239 * 17 16 15 20 20 N 1.30821 * 119.99960 * 17.84215 * 19 17 16 21 21 Si 1.86795 * 119.99880 * 197.84654 * 19 17 16 22 22 H 1.48501 * 109.47250 * 89.99710 * 21 19 17 23 23 H 1.48495 * 109.47203 * 209.99541 * 21 19 17 24 24 H 1.48503 * 109.47134 * 329.99924 * 21 19 17 25 25 C 1.40720 * 119.51432 * 359.70548 * 16 15 14 26 26 C 1.37618 * 119.74112 * 359.97438 * 25 16 15 27 27 C 1.47233 * 110.21851 * 50.90943 * 5 4 3 28 28 C 1.50310 * 118.55763 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47133 * 270.01562 * 1 2 3 30 30 H 1.08994 * 109.47392 * 30.02090 * 1 2 3 31 31 H 1.09005 * 109.46764 * 150.02080 * 1 2 3 32 32 H 1.08003 * 118.35753 * 0.39296 * 3 2 1 33 33 H 1.09010 * 109.33252 * 103.19956 * 4 3 2 34 34 H 1.08994 * 109.34001 * 222.70275 * 4 3 2 35 35 H 1.09004 * 109.47515 * 53.95306 * 6 5 4 36 36 H 1.08998 * 109.47258 * 173.95280 * 6 5 4 37 37 H 1.09004 * 109.46764 * 300.00445 * 7 6 5 38 38 H 1.08998 * 109.46938 * 59.99763 * 7 6 5 39 39 H 0.96996 * 120.00374 * 0.02562 * 8 7 6 40 40 H 0.97002 * 120.00016 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.46325 * 299.99725 * 12 11 9 42 42 H 1.09002 * 109.47117 * 59.99363 * 12 11 9 43 43 H 1.08003 * 119.87152 * 359.97095 * 14 13 12 44 44 H 1.07997 * 120.13083 * 180.26985 * 15 14 13 45 45 H 0.97004 * 119.99515 * 180.02562 * 20 19 17 46 46 H 1.07994 * 120.12874 * 179.97438 * 25 16 15 47 47 H 1.08003 * 119.87483 * 180.02562 * 26 25 16 48 48 H 1.09000 * 109.63059 * 171.51724 * 27 5 4 49 49 H 1.08999 * 109.64051 * 50.90650 * 27 5 4 50 50 H 1.09004 * 109.42547 * 283.57541 * 28 2 1 51 51 H 1.08998 * 109.43099 * 43.42786 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1275 1.1404 0.0000 4 6 3.6238 1.2642 -0.0081 5 7 4.2418 -0.0074 0.3883 6 6 4.0641 -0.2536 1.8255 7 6 4.8437 0.7940 2.6227 8 7 4.6660 0.5488 4.0561 9 6 5.2655 1.3525 4.9566 10 8 5.9535 2.2814 4.5795 11 7 5.1025 1.1267 6.2753 12 6 5.7537 2.0006 7.2543 13 6 5.4133 1.5364 8.6469 14 6 4.2945 2.0458 9.2877 15 6 3.9708 1.6248 10.5573 16 6 4.7872 0.6824 11.2096 17 6 4.4684 0.2475 12.5167 18 1 5.2438 -0.1394 13.1613 19 6 3.1480 0.3184 12.9751 20 7 2.1651 0.4460 12.1213 21 14 2.7891 0.2308 14.8062 22 1 2.7991 1.6010 15.3787 23 1 1.4551 -0.3853 15.0202 24 1 3.8279 -0.5928 15.4754 25 6 5.9236 0.1764 10.5518 26 6 6.2243 0.6069 9.2797 27 6 3.6861 -1.1135 -0.4088 28 6 2.2255 -1.3202 0.0006 29 1 -0.3633 0.0003 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 1.5379 2.0452 0.0065 33 1 3.9584 1.5312 -1.0106 34 1 3.9251 2.0451 0.6901 35 1 3.0056 -0.1881 2.0773 36 1 4.4354 -1.2483 2.0724 37 1 5.9023 0.7285 2.3710 38 1 4.4725 1.7887 2.3759 39 1 4.1174 -0.1924 4.3569 40 1 4.5533 0.3859 6.5762 41 1 6.8338 1.9636 7.1124 42 1 5.4040 3.0239 7.1171 43 1 3.6722 2.7729 8.7870 44 1 3.0963 2.0197 11.0529 45 1 1.2500 0.4955 12.4391 46 1 6.5573 -0.5468 11.0433 47 1 7.0957 0.2196 8.7726 48 1 4.2529 -2.0244 -0.2163 49 1 3.7377 -0.8635 -1.4685 50 1 2.1869 -1.7535 1.0001 51 1 1.7432 -1.9959 -0.7057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573915844.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:33 Heat of formation + Delta-G solvation = -18.048754 kcal Electronic energy + Delta-G solvation = -28470.626110 eV Core-core repulsion = 24561.452729 eV Total energy + Delta-G solvation = -3909.173381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.16868 -40.59811 -39.46589 -36.64326 -36.09509 -35.06942 -34.74571 -32.19952 -31.87690 -31.18028 -30.49562 -28.56500 -27.68083 -25.51081 -24.86212 -24.03899 -22.89140 -22.23369 -21.96036 -21.77410 -19.51451 -19.23320 -18.15531 -17.70478 -17.19436 -17.00898 -16.60497 -16.27727 -16.05002 -15.86740 -15.60647 -15.47145 -15.38115 -14.90262 -14.87505 -14.70831 -14.31377 -14.19363 -13.82694 -13.70067 -13.53204 -13.45704 -13.28688 -12.90601 -12.82571 -12.80125 -12.72189 -12.64924 -12.47898 -12.36238 -12.09003 -11.92764 -11.57247 -11.53167 -11.36945 -11.27558 -11.02847 -10.34361 -9.75608 -9.65548 -9.39506 -9.30939 -9.28580 -8.67069 -6.36728 0.82479 1.14287 1.21016 1.38657 1.46096 1.51419 1.84216 2.18553 2.19857 2.68996 2.99329 3.50229 3.73896 3.76654 3.89963 3.90706 4.11498 4.14259 4.18880 4.22337 4.34149 4.41781 4.52972 4.57395 4.64080 4.65208 4.68593 4.74008 4.79183 4.79995 4.84603 4.93521 4.99367 5.01526 5.04247 5.05297 5.13014 5.14849 5.35861 5.43342 5.46310 5.56361 5.61308 5.69030 5.88982 5.93443 6.01624 6.08416 6.09066 6.10829 6.21606 6.36315 6.68146 6.91913 7.00536 7.12859 7.60673 8.29344 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.001751 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.256918 B =15987.429054 C =17090.514644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.129 4.129 3 C -0.204 4.204 4 C 0.075 3.925 5 N -0.532 5.532 6 C 0.052 3.948 7 C 0.148 3.852 8 N -0.735 5.735 9 C 0.699 3.301 10 O -0.639 6.639 11 N -0.729 5.729 12 C 0.213 3.787 13 C -0.226 4.226 14 C -0.081 4.081 15 C -0.192 4.192 16 C 0.085 3.915 17 C -0.496 4.496 18 H 0.076 0.924 19 C 0.036 3.964 20 N -0.819 5.819 21 Si 0.981 3.019 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.243 4.243 26 C -0.067 4.067 27 C 0.054 3.946 28 C -0.121 4.121 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.409 0.591 40 H 0.405 0.595 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.289 0.711 46 H 0.098 0.902 47 H 0.116 0.884 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -4.704 -22.749 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.129 4.129 3 C -0.224 4.224 4 C -0.053 4.053 5 N -0.254 5.254 6 C -0.077 4.077 7 C 0.023 3.977 8 N -0.391 5.391 9 C 0.399 3.601 10 O -0.521 6.521 11 N -0.384 5.384 12 C 0.089 3.911 13 C -0.227 4.227 14 C -0.100 4.100 15 C -0.212 4.212 16 C 0.083 3.917 17 C -0.525 4.525 18 H 0.094 0.906 19 C -0.180 4.180 20 N -0.444 5.444 21 Si 0.802 3.198 22 H -0.188 1.188 23 H -0.192 1.192 24 H -0.182 1.182 25 C -0.262 4.262 26 C -0.085 4.085 27 C -0.074 4.074 28 C -0.159 4.159 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.240 0.760 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.100 0.900 46 H 0.117 0.883 47 H 0.134 0.866 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.095 0.905 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.110 -3.824 -23.229 23.746 hybrid contribution -1.775 -0.474 1.409 2.315 sum -4.885 -4.297 -21.820 22.769 Atomic orbital electron populations 1.20929 0.91732 1.02912 1.02121 1.21201 0.96519 0.95093 1.00136 1.22782 0.97785 0.98106 1.03686 1.21180 0.89409 0.92285 1.02420 1.62590 1.56200 1.03267 1.03383 1.22145 0.98586 0.99037 0.87895 1.21048 1.00450 0.98585 0.77633 1.44868 1.54591 1.33923 1.05763 1.16132 0.80216 0.82283 0.81488 1.90866 1.46338 1.34729 1.80215 1.45422 1.54608 1.34971 1.03392 1.19582 0.96026 0.92055 0.83400 1.19196 1.00255 1.06814 0.96477 1.20751 0.95956 0.98632 0.94688 1.21262 1.02440 1.01053 0.96415 1.18016 0.91319 0.89325 0.93057 1.19892 0.94653 1.38741 0.99173 0.90558 1.26751 0.95328 0.91404 1.04504 1.69863 1.01259 1.35089 1.38200 0.85213 0.78513 0.79555 0.76526 1.18840 1.19197 1.18216 1.21162 1.02296 1.06045 0.96728 1.20687 0.97902 0.95743 0.94202 1.22348 0.92438 0.94397 0.98177 1.21107 0.96762 0.94993 1.03037 0.91839 0.91800 0.90973 0.87574 0.88747 0.90285 0.93379 0.88902 0.92266 0.92972 0.75504 0.76007 0.92329 0.92925 0.87856 0.88121 0.90032 0.88339 0.86612 0.88939 0.89812 0.90490 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.91 71.23 0.71 -0.68 16 2 C -0.13 -1.73 5.25 -15.40 -0.08 -1.81 16 3 C -0.20 -3.03 8.95 26.68 0.24 -2.79 16 4 C 0.07 1.13 5.83 85.39 0.50 1.63 16 5 N -0.53 -7.95 5.03 -900.94 -4.53 -12.48 16 6 C 0.05 0.79 4.17 86.30 0.36 1.15 16 7 C 0.15 3.14 5.63 86.38 0.49 3.63 16 8 N -0.73 -16.93 5.56 -478.54 -2.66 -19.59 16 9 C 0.70 22.23 8.57 179.06 1.53 23.76 16 10 O -0.64 -25.63 16.34 -3.99 -0.07 -25.69 16 11 N -0.73 -22.59 5.55 -482.29 -2.68 -25.26 16 12 C 0.21 7.49 5.79 85.63 0.50 7.98 16 13 C -0.23 -9.05 5.27 -19.68 -0.10 -9.15 16 14 C -0.08 -3.60 9.67 22.22 0.21 -3.38 16 15 C -0.19 -9.77 8.70 22.73 0.20 -9.58 16 16 C 0.09 4.47 5.58 -21.29 -0.12 4.35 16 17 C -0.50 -26.02 9.05 23.46 0.21 -25.80 16 18 H 0.08 3.88 7.91 -2.91 -0.02 3.85 16 19 C 0.04 1.76 5.14 85.26 0.44 2.19 16 20 N -0.82 -41.44 10.95 21.83 0.24 -41.20 16 21 Si 0.98 37.16 29.59 68.60 2.03 39.19 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.24 -11.43 9.80 22.73 0.22 -11.20 16 26 C -0.07 -2.75 9.67 22.22 0.21 -2.54 16 27 C 0.05 0.60 6.03 86.27 0.52 1.12 16 28 C -0.12 -1.29 5.24 29.76 0.16 -1.14 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.71 7.94 -2.39 -0.02 0.69 16 31 H 0.07 0.68 8.08 -2.38 -0.02 0.66 16 32 H 0.11 1.56 7.87 -2.91 -0.02 1.54 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.35 6.01 -2.39 -0.01 1.34 16 35 H 0.05 0.75 6.00 -2.39 -0.01 0.74 16 36 H 0.09 1.21 8.09 -2.39 -0.02 1.19 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.25 6.33 -2.39 -0.02 1.24 16 39 H 0.41 7.08 8.49 -92.71 -0.79 6.30 16 40 H 0.40 11.32 8.48 -92.71 -0.79 10.53 16 41 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 42 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 43 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 44 H 0.10 5.40 6.16 -2.91 -0.02 5.38 16 45 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 46 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 48 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 50 H 0.08 0.84 7.13 -2.38 -0.02 0.82 16 51 H 0.09 0.75 8.13 -2.39 -0.02 0.73 16 Total: -1.00 -62.83 408.48 -2.11 -64.94 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.63 Total: 42.35 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 6.19 Total: -22.25 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -9.63 Total: -98.53 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.07 Total: -25.69 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -62.83 -2.11 -64.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573915844.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.888 kcal (2) G-P(sol) polarization free energy of solvation -62.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds