Wall clock time and date at job start Wed Apr 1 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 115.56196 * 2 1 4 4 C 1.38233 * 120.00346 * 214.03595 * 3 2 1 5 5 C 1.38228 * 120.00071 * 179.78789 * 4 3 2 6 6 C 1.38238 * 120.00178 * 0.44436 * 5 4 3 7 7 C 1.38232 * 119.99604 * 359.80723 * 6 5 4 8 8 C 1.38228 * 120.00306 * 359.97438 * 7 6 5 9 9 C 1.53079 * 117.51334 * 145.70285 * 2 1 3 10 10 C 1.52997 * 59.98535 * 107.47821 * 9 2 1 11 11 H 1.09000 * 117.49861 * 107.49415 * 10 9 2 12 12 N 1.46502 * 117.49784 * 252.49943 * 10 9 2 13 13 C 1.34773 * 119.99616 * 223.74350 * 12 10 9 14 14 O 1.21589 * 120.00632 * 0.02562 * 13 12 10 15 15 N 1.34782 * 119.99726 * 180.02562 * 13 12 10 16 16 C 1.46500 * 119.99699 * 180.02562 * 15 13 12 17 17 C 1.53037 * 109.46013 * 154.99905 * 16 15 13 18 18 C 1.53194 * 109.31665 * 181.38272 * 17 16 15 19 19 N 1.46927 * 108.77332 * 305.36499 * 18 17 16 20 20 C 1.36933 * 120.62742 * 233.32862 * 19 18 17 21 21 H 1.08008 * 119.99663 * 151.88130 * 20 19 18 22 22 C 1.38805 * 120.00459 * 331.88447 * 20 19 18 23 23 N 1.31622 * 119.99962 * 343.12018 * 22 20 19 24 24 Si 1.86795 * 120.00332 * 163.12475 * 22 20 19 25 25 H 1.48496 * 109.47227 * 59.99553 * 24 22 20 26 26 H 1.48505 * 109.47370 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47123 * 299.99866 * 24 22 20 28 28 C 1.46927 * 118.73757 * 53.60733 * 19 18 17 29 29 C 1.53042 * 109.45824 * 275.06193 * 16 15 13 30 30 H 1.09003 * 109.46985 * 205.68426 * 1 2 3 31 31 H 1.08999 * 109.47373 * 325.68611 * 1 2 3 32 32 H 1.09001 * 109.46985 * 85.68979 * 1 2 3 33 33 H 1.08004 * 119.99575 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.00029 * 180.27545 * 5 4 3 35 35 H 1.08005 * 120.00101 * 179.83982 * 6 5 4 36 36 H 1.08007 * 119.99914 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.00087 * 179.97438 * 8 7 6 38 38 H 1.09001 * 117.51461 * 359.97438 * 9 2 1 39 39 H 1.08996 * 117.49396 * 214.96523 * 9 2 1 40 40 H 0.97000 * 120.00059 * 43.75080 * 12 10 9 41 41 H 0.96993 * 120.00153 * 359.97438 * 15 13 12 42 42 H 1.09001 * 109.46138 * 35.02351 * 16 15 13 43 43 H 1.08998 * 109.49912 * 61.42728 * 17 16 15 44 44 H 1.09003 * 109.49884 * 301.33444 * 17 16 15 45 45 H 1.08994 * 109.58638 * 185.57412 * 18 17 16 46 46 H 1.08999 * 109.69948 * 65.22024 * 18 17 16 47 47 H 0.96995 * 120.00418 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.59069 * 66.17922 * 28 19 18 49 49 H 1.08998 * 109.58537 * 186.60221 * 28 19 18 50 50 H 1.09000 * 109.49938 * 298.56874 * 29 16 15 51 51 H 1.09008 * 109.49678 * 58.66972 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 3.3734 1.5550 -0.6700 5 6 3.9676 2.8031 -0.6737 6 6 3.3733 3.8535 0.0004 7 6 2.1828 3.6567 0.6748 8 6 1.5863 2.4097 0.6747 9 6 2.2372 -1.1216 0.7650 10 6 2.2365 -1.1210 -0.7650 11 1 3.1714 -0.8750 -1.2685 12 7 1.3962 -2.1123 -1.4414 13 6 1.8768 -2.7925 -2.5009 14 8 3.0079 -2.5840 -2.8952 15 7 1.1035 -3.7041 -3.1236 16 6 1.6261 -4.4440 -4.2749 17 6 0.8824 -5.7750 -4.4060 18 6 1.4548 -6.5610 -5.5898 19 7 1.3965 -5.7164 -6.7906 20 6 0.7941 -6.1697 -7.9337 21 1 0.3489 -5.4685 -8.6241 22 6 0.7555 -7.5304 -8.2053 23 7 1.5618 -8.3520 -7.5671 24 14 -0.4407 -8.1956 -9.4765 25 1 -0.1576 -7.5745 -10.7953 26 1 -0.2846 -9.6688 -9.5800 27 1 -1.8305 -7.8724 -9.0652 28 6 2.0023 -4.3787 -6.7435 29 6 1.4236 -3.6172 -5.5468 30 1 -0.3633 -0.9262 0.4454 31 1 -0.3634 0.8488 0.5793 32 1 -0.3633 0.0772 -1.0248 33 1 3.8394 0.7335 -1.1939 34 1 4.8975 2.9569 -1.2009 35 1 3.8389 4.8280 -0.0003 36 1 1.7182 4.4775 1.2011 37 1 0.6564 2.2559 1.2019 38 1 1.6124 -1.8592 1.2687 39 1 3.1723 -0.8757 1.2680 40 1 0.4939 -2.2789 -1.1267 41 1 0.2013 -3.8708 -2.8089 42 1 2.6897 -4.6348 -4.1316 43 1 -0.1775 -5.5845 -4.5742 44 1 1.0076 -6.3534 -3.4906 45 1 0.8648 -7.4635 -5.7487 46 1 2.4902 -6.8328 -5.3841 47 1 1.5351 -9.3028 -7.7571 48 1 3.0825 -4.4705 -6.6306 49 1 1.7735 -3.8414 -7.6638 50 1 0.3586 -3.4470 -5.7044 51 1 1.9343 -2.6597 -5.4435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610350601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:07 Heat of formation + Delta-G solvation = 40.397592 kcal Electronic energy + Delta-G solvation = -29381.838449 eV Core-core repulsion = 25475.199492 eV Total energy + Delta-G solvation = -3906.638957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.58894 -39.63355 -37.95940 -37.09053 -34.34985 -33.43752 -31.96653 -31.34900 -30.57069 -30.00732 -29.20707 -28.70552 -25.04772 -23.45311 -23.12373 -22.55599 -22.17001 -21.52745 -20.62871 -19.66732 -19.45820 -18.29972 -17.24622 -16.80496 -16.34449 -15.45180 -15.30158 -15.03905 -14.93727 -14.63228 -14.39757 -14.10917 -13.95015 -13.71108 -13.62008 -13.52097 -13.07142 -12.97624 -12.79796 -12.65063 -12.48444 -12.32891 -12.26360 -11.57675 -11.43136 -11.27618 -11.16560 -11.09896 -10.83445 -10.70592 -10.50417 -10.47426 -10.26062 -10.05598 -10.01686 -9.74135 -9.52737 -9.20005 -9.02433 -8.81325 -8.54999 -8.41532 -6.66808 -5.78337 -3.20560 1.03438 1.12387 2.65832 3.12340 3.38954 3.43517 3.44574 3.45752 3.81474 4.16025 4.28909 4.36167 4.50491 4.51724 4.59614 4.70990 4.81521 4.87374 5.13222 5.20379 5.35042 5.37834 5.39592 5.42889 5.44656 5.52378 5.54260 5.62811 5.66205 5.75088 5.78049 5.80578 5.91758 6.10546 6.20103 6.25147 6.30877 6.33184 6.37189 6.41588 6.51898 6.59984 6.62912 6.71428 6.82554 6.90541 7.00569 7.11243 7.33598 7.63325 7.80211 8.12026 8.46052 8.73068 9.22067 9.85291 10.42664 11.30554 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.001852 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.656990 B =15117.499909 C =15424.442052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.105 4.105 3 C -0.040 4.040 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.126 4.126 7 C -0.120 4.120 8 C -0.115 4.115 9 C -0.177 4.177 10 C 0.120 3.880 11 H 0.141 0.859 12 N -0.721 5.721 13 C 0.706 3.294 14 O -0.588 6.588 15 N -0.738 5.738 16 C 0.169 3.831 17 C -0.146 4.146 18 C 0.175 3.825 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.147 3.853 29 C -0.139 4.139 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.395 0.605 41 H 0.391 0.609 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.091 0.909 46 H 0.021 0.979 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.055 0.945 50 H 0.056 0.944 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 20.033 20.724 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.107 4.107 3 C -0.040 4.040 4 C -0.136 4.136 5 C -0.133 4.133 6 C -0.144 4.144 7 C -0.138 4.138 8 C -0.133 4.133 9 C -0.216 4.216 10 C 0.013 3.987 11 H 0.159 0.841 12 N -0.374 5.374 13 C 0.406 3.594 14 O -0.466 6.466 15 N -0.391 5.391 16 C 0.065 3.935 17 C -0.186 4.186 18 C 0.048 3.952 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.211 1.211 28 C 0.020 3.980 29 C -0.180 4.180 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.229 0.771 41 H 0.224 0.776 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.040 0.960 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.731 19.983 20.256 28.464 hybrid contribution -1.493 -0.473 -0.225 1.582 sum -2.224 19.510 20.031 28.051 Atomic orbital electron populations 1.21336 0.91207 1.02302 1.02539 1.20743 0.95136 0.88560 1.06211 1.18970 0.94635 0.92992 0.97410 1.21161 0.95481 0.97765 0.99200 1.21163 1.00025 0.92908 0.99167 1.21167 0.96079 0.99005 0.98185 1.21122 0.95938 0.97030 0.99672 1.20966 1.00158 0.92538 0.99589 1.23781 1.02793 0.99501 0.95508 1.21594 0.96228 0.90367 0.90526 0.84126 1.44483 1.17466 1.42412 1.33080 1.15946 0.84759 0.79340 0.79385 1.90914 1.18351 1.69477 1.67830 1.45547 1.17133 1.42140 1.34251 1.20926 0.98887 0.90737 0.82917 1.22542 1.00142 0.95109 1.00799 1.20740 0.98282 0.93623 0.82561 1.44096 1.65116 1.12693 1.09627 1.19147 1.28632 0.90961 0.99411 0.91710 1.25059 0.98609 0.97284 0.98753 1.70014 1.36850 1.03186 1.44754 0.86361 0.81235 0.77716 0.81396 1.20890 1.21655 1.21082 1.20882 0.94906 0.87196 0.94978 1.22393 1.01085 0.98430 0.96051 0.92082 0.91476 0.91645 0.85616 0.85914 0.86188 0.86128 0.85956 0.88045 0.87867 0.77075 0.77629 0.90022 0.92238 0.92771 0.89078 0.96044 0.93557 0.96158 0.92609 0.92477 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 8.73 37.16 0.32 -0.46 16 2 C -0.10 -0.87 2.55 -155.62 -0.40 -1.27 16 3 C -0.04 -0.36 5.45 -104.62 -0.57 -0.93 16 4 C -0.12 -1.12 9.39 -39.59 -0.37 -1.49 16 5 C -0.11 -0.98 10.05 -39.58 -0.40 -1.37 16 6 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 7 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 8 C -0.11 -0.92 9.27 -39.58 -0.37 -1.28 16 9 C -0.18 -1.42 9.81 -26.69 -0.26 -1.69 16 10 C 0.12 1.23 5.74 -67.93 -0.39 0.84 16 11 H 0.14 1.70 5.33 -51.93 -0.28 1.43 16 12 N -0.72 -7.78 5.35 -58.67 -0.31 -8.09 16 13 C 0.71 10.55 8.53 -86.92 -0.74 9.80 16 14 O -0.59 -11.27 15.57 5.29 0.08 -11.19 16 15 N -0.74 -10.40 5.08 -58.63 -0.30 -10.70 16 16 C 0.17 2.97 2.41 -67.89 -0.16 2.81 16 17 C -0.15 -2.67 5.55 -26.61 -0.15 -2.81 16 18 C 0.17 4.10 5.29 -3.71 -0.02 4.08 16 19 N -0.59 -14.86 2.99 -172.32 -0.52 -15.37 16 20 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 21 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 22 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 23 N -0.90 -26.09 11.20 55.49 0.62 -25.46 16 24 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 29 C -0.14 -2.59 5.65 -26.61 -0.15 -2.74 16 30 H 0.06 0.33 7.61 -51.93 -0.40 -0.06 16 31 H 0.07 0.39 6.14 -51.93 -0.32 0.07 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.13 1.21 5.93 -52.48 -0.31 0.90 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 37 H 0.12 0.77 6.45 -52.49 -0.34 0.44 16 38 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.40 3.16 7.71 -40.82 -0.31 2.85 16 41 H 0.39 4.34 8.62 -40.82 -0.35 3.99 16 42 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 LS Contribution 403.54 15.07 6.08 6.08 Total: -1.00 -32.41 403.54 -12.12 -44.53 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.04 Total: 6.73 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -4.70 Total: -3.06 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.51 Total: -59.63 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.41 -12.12 -44.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610350601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.929 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds