Wall clock time and date at job start Wed Apr 1 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 115.56196 * 2 1 4 4 C 1.38233 * 120.00346 * 214.03595 * 3 2 1 5 5 C 1.38228 * 120.00071 * 179.78789 * 4 3 2 6 6 C 1.38238 * 120.00178 * 0.44436 * 5 4 3 7 7 C 1.38232 * 119.99604 * 359.80723 * 6 5 4 8 8 C 1.38228 * 120.00306 * 359.97438 * 7 6 5 9 9 C 1.53079 * 117.51334 * 145.70285 * 2 1 3 10 10 C 1.52997 * 59.98535 * 107.47821 * 9 2 1 11 11 H 1.09000 * 117.49861 * 107.49415 * 10 9 2 12 12 N 1.46502 * 117.49784 * 252.49943 * 10 9 2 13 13 C 1.34773 * 119.99616 * 223.74350 * 12 10 9 14 14 O 1.21589 * 120.00632 * 0.02562 * 13 12 10 15 15 N 1.34782 * 119.99726 * 180.02562 * 13 12 10 16 16 C 1.46500 * 119.99699 * 180.02562 * 15 13 12 17 17 C 1.53037 * 109.46013 * 154.99905 * 16 15 13 18 18 C 1.53194 * 109.31665 * 181.38272 * 17 16 15 19 19 N 1.46927 * 108.77332 * 305.36499 * 18 17 16 20 20 C 1.36933 * 120.62742 * 233.32862 * 19 18 17 21 21 H 1.08008 * 119.99663 * 151.88130 * 20 19 18 22 22 C 1.38805 * 120.00459 * 331.88447 * 20 19 18 23 23 N 1.31622 * 119.99962 * 343.12018 * 22 20 19 24 24 Si 1.86795 * 120.00332 * 163.12475 * 22 20 19 25 25 H 1.48496 * 109.47227 * 59.99553 * 24 22 20 26 26 H 1.48505 * 109.47370 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47123 * 299.99866 * 24 22 20 28 28 C 1.46927 * 118.73757 * 53.60733 * 19 18 17 29 29 C 1.53042 * 109.45824 * 275.06193 * 16 15 13 30 30 H 1.09003 * 109.46985 * 205.68426 * 1 2 3 31 31 H 1.08999 * 109.47373 * 325.68611 * 1 2 3 32 32 H 1.09001 * 109.46985 * 85.68979 * 1 2 3 33 33 H 1.08004 * 119.99575 * 0.02562 * 4 3 2 34 34 H 1.07999 * 120.00029 * 180.27545 * 5 4 3 35 35 H 1.08005 * 120.00101 * 179.83982 * 6 5 4 36 36 H 1.08007 * 119.99914 * 180.02562 * 7 6 5 37 37 H 1.07998 * 120.00087 * 179.97438 * 8 7 6 38 38 H 1.09001 * 117.51461 * 359.97438 * 9 2 1 39 39 H 1.08996 * 117.49396 * 214.96523 * 9 2 1 40 40 H 0.97000 * 120.00059 * 43.75080 * 12 10 9 41 41 H 0.96993 * 120.00153 * 359.97438 * 15 13 12 42 42 H 1.09001 * 109.46138 * 35.02351 * 16 15 13 43 43 H 1.08998 * 109.49912 * 61.42728 * 17 16 15 44 44 H 1.09003 * 109.49884 * 301.33444 * 17 16 15 45 45 H 1.08994 * 109.58638 * 185.57412 * 18 17 16 46 46 H 1.08999 * 109.69948 * 65.22024 * 18 17 16 47 47 H 0.96995 * 120.00418 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.59069 * 66.17922 * 28 19 18 49 49 H 1.08998 * 109.58537 * 186.60221 * 28 19 18 50 50 H 1.09000 * 109.49938 * 298.56874 * 29 16 15 51 51 H 1.09008 * 109.49678 * 58.66972 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 3.3734 1.5550 -0.6700 5 6 3.9676 2.8031 -0.6737 6 6 3.3733 3.8535 0.0004 7 6 2.1828 3.6567 0.6748 8 6 1.5863 2.4097 0.6747 9 6 2.2372 -1.1216 0.7650 10 6 2.2365 -1.1210 -0.7650 11 1 3.1714 -0.8750 -1.2685 12 7 1.3962 -2.1123 -1.4414 13 6 1.8768 -2.7925 -2.5009 14 8 3.0079 -2.5840 -2.8952 15 7 1.1035 -3.7041 -3.1236 16 6 1.6261 -4.4440 -4.2749 17 6 0.8824 -5.7750 -4.4060 18 6 1.4548 -6.5610 -5.5898 19 7 1.3965 -5.7164 -6.7906 20 6 0.7941 -6.1697 -7.9337 21 1 0.3489 -5.4685 -8.6241 22 6 0.7555 -7.5304 -8.2053 23 7 1.5618 -8.3520 -7.5671 24 14 -0.4407 -8.1956 -9.4765 25 1 -0.1576 -7.5745 -10.7953 26 1 -0.2846 -9.6688 -9.5800 27 1 -1.8305 -7.8724 -9.0652 28 6 2.0023 -4.3787 -6.7435 29 6 1.4236 -3.6172 -5.5468 30 1 -0.3633 -0.9262 0.4454 31 1 -0.3634 0.8488 0.5793 32 1 -0.3633 0.0772 -1.0248 33 1 3.8394 0.7335 -1.1939 34 1 4.8975 2.9569 -1.2009 35 1 3.8389 4.8280 -0.0003 36 1 1.7182 4.4775 1.2011 37 1 0.6564 2.2559 1.2019 38 1 1.6124 -1.8592 1.2687 39 1 3.1723 -0.8757 1.2680 40 1 0.4939 -2.2789 -1.1267 41 1 0.2013 -3.8708 -2.8089 42 1 2.6897 -4.6348 -4.1316 43 1 -0.1775 -5.5845 -4.5742 44 1 1.0076 -6.3534 -3.4906 45 1 0.8648 -7.4635 -5.7487 46 1 2.4902 -6.8328 -5.3841 47 1 1.5351 -9.3028 -7.7571 48 1 3.0825 -4.4705 -6.6306 49 1 1.7735 -3.8414 -7.6638 50 1 0.3586 -3.4470 -5.7044 51 1 1.9343 -2.6597 -5.4435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610350601.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:06 Heat of formation + Delta-G solvation = 21.639341 kcal Electronic energy + Delta-G solvation = -29382.651868 eV Core-core repulsion = 25475.199492 eV Total energy + Delta-G solvation = -3907.452376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.49992 -40.59893 -39.18190 -38.23582 -35.95670 -34.56725 -33.62682 -32.01224 -31.75443 -31.34346 -30.72642 -29.30180 -26.91565 -24.35965 -24.01125 -23.85231 -23.46272 -22.66397 -21.77806 -21.06268 -20.35045 -19.54151 -18.63063 -17.91744 -17.47255 -16.83062 -16.37842 -16.13834 -16.04459 -15.77872 -15.48940 -15.34503 -15.16056 -14.95181 -14.76116 -14.53873 -14.36689 -14.25580 -14.04540 -13.66658 -13.38824 -13.22461 -13.10379 -12.98790 -12.84630 -12.57610 -12.53978 -12.33056 -12.20897 -12.02973 -11.87973 -11.86099 -11.81046 -11.56428 -11.40468 -11.23934 -11.14672 -10.54513 -10.15325 -9.81823 -9.63102 -9.40906 -8.70384 -7.87124 -5.33105 0.41264 0.50575 1.49359 1.50752 1.58243 1.60014 2.06874 2.52639 2.70750 3.10985 3.16164 3.29845 3.59917 3.66737 3.68473 3.87306 3.90372 3.93858 4.07281 4.13572 4.25677 4.29718 4.34883 4.46635 4.52985 4.62533 4.65418 4.74452 4.81592 4.84582 4.87615 4.88816 4.92362 4.96678 5.04331 5.06885 5.15592 5.16497 5.21223 5.27888 5.30075 5.47306 5.52064 5.59191 5.61798 5.64663 5.65054 5.71032 5.71479 6.02567 6.12463 6.39566 7.11086 7.14957 7.59470 7.84286 8.37666 9.19818 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.001852 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.656990 B =15117.499909 C =15424.442052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 C -0.055 4.055 4 C -0.140 4.140 5 C -0.129 4.129 6 C -0.132 4.132 7 C -0.123 4.123 8 C -0.119 4.119 9 C -0.161 4.161 10 C 0.091 3.909 11 H 0.115 0.885 12 N -0.700 5.700 13 C 0.703 3.297 14 O -0.635 6.635 15 N -0.724 5.724 16 C 0.182 3.818 17 C -0.127 4.127 18 C 0.178 3.822 19 N -0.608 5.608 20 C -0.264 4.264 21 H 0.067 0.933 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.278 1.278 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.145 3.855 29 C -0.123 4.123 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.412 0.588 41 H 0.410 0.590 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.064 0.936 46 H -0.006 1.006 47 H 0.251 0.749 48 H 0.006 0.994 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 21.678 22.644 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.091 4.091 3 C -0.055 4.055 4 C -0.158 4.158 5 C -0.146 4.146 6 C -0.150 4.150 7 C -0.141 4.141 8 C -0.136 4.136 9 C -0.200 4.200 10 C -0.016 4.016 11 H 0.132 0.868 12 N -0.354 5.354 13 C 0.403 3.597 14 O -0.516 6.516 15 N -0.379 5.379 16 C 0.077 3.923 17 C -0.166 4.166 18 C 0.052 3.948 19 N -0.332 5.332 20 C -0.394 4.394 21 H 0.085 0.915 22 C -0.246 4.246 23 N -0.581 5.581 24 Si 0.798 3.202 25 H -0.204 1.204 26 H -0.221 1.221 27 H -0.201 1.201 28 C 0.018 3.982 29 C -0.163 4.163 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.249 0.751 41 H 0.247 0.753 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.012 0.988 47 H 0.060 0.940 48 H 0.024 0.976 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.308 21.671 22.233 31.223 hybrid contribution -0.609 -0.883 -0.795 1.335 sum -3.917 20.788 21.438 30.118 Atomic orbital electron populations 1.21401 0.89554 1.03900 1.02594 1.20793 0.96163 0.87826 1.04319 1.19146 0.94653 0.93808 0.97918 1.21227 0.96354 0.97994 1.00177 1.21370 1.00594 0.92995 0.99689 1.21469 0.96306 0.99553 0.97638 1.21480 0.95713 0.97624 0.99237 1.21229 1.00772 0.92340 0.99295 1.23828 1.03113 0.99519 0.93498 1.21584 0.96118 0.92025 0.91830 0.86754 1.44207 1.18148 1.41446 1.31610 1.16073 0.84121 0.79449 0.80025 1.90893 1.20539 1.70861 1.69314 1.45102 1.17915 1.41654 1.33215 1.20488 0.97458 0.90650 0.83742 1.22251 1.00232 0.94872 0.99285 1.20574 0.96533 0.93510 0.84186 1.44351 1.65432 1.13684 1.09712 1.19480 1.28491 0.91333 1.00139 0.91526 1.25836 1.00199 0.97518 1.00999 1.70179 1.38417 1.03086 1.46445 0.85306 0.79297 0.76541 0.79065 1.20375 1.22051 1.20073 1.20962 0.94144 0.86357 0.96706 1.22180 1.01209 0.97907 0.95042 0.90307 0.90169 0.92287 0.86946 0.85193 0.84212 0.83707 0.84015 0.86231 0.87902 0.75053 0.75350 0.92693 0.90998 0.90430 0.91768 0.98779 0.93996 0.97625 0.92460 0.91509 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.73 71.98 0.63 -0.60 16 2 C -0.09 -1.34 2.55 -52.90 -0.14 -1.47 16 3 C -0.05 -0.94 5.45 -19.87 -0.11 -1.05 16 4 C -0.14 -2.72 9.39 22.27 0.21 -2.51 16 5 C -0.13 -2.18 10.05 22.27 0.22 -1.96 16 6 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 7 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 8 C -0.12 -1.64 9.27 22.27 0.21 -1.43 16 9 C -0.16 -2.32 9.81 30.62 0.30 -2.02 16 10 C 0.09 1.83 5.74 44.99 0.26 2.09 16 11 H 0.11 2.96 5.33 -2.39 -0.01 2.94 16 12 N -0.70 -14.08 5.35 -457.80 -2.45 -16.53 16 13 C 0.70 20.52 8.53 179.05 1.53 22.05 16 14 O -0.63 -24.89 15.57 -3.99 -0.06 -24.95 16 15 N -0.72 -19.21 5.08 -457.68 -2.33 -21.54 16 16 C 0.18 6.30 2.41 45.02 0.11 6.41 16 17 C -0.13 -4.50 5.55 30.67 0.17 -4.33 16 18 C 0.18 8.56 5.29 86.36 0.46 9.02 16 19 N -0.61 -31.01 2.99 -699.10 -2.09 -33.11 16 20 C -0.26 -14.60 9.58 84.03 0.81 -13.79 16 21 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 22 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 23 N -0.94 -55.32 11.20 21.65 0.24 -55.08 16 24 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 28 C 0.14 6.41 6.52 86.36 0.56 6.97 16 29 C -0.12 -4.52 5.65 30.67 0.17 -4.35 16 30 H 0.08 0.55 7.61 -2.39 -0.02 0.53 16 31 H 0.08 0.65 6.14 -2.39 -0.01 0.63 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 2.40 5.93 -2.91 -0.02 2.38 16 34 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 37 H 0.14 1.33 6.45 -2.91 -0.02 1.31 16 38 H 0.12 1.30 8.05 -2.39 -0.02 1.28 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.41 5.43 7.71 -92.71 -0.71 4.71 16 41 H 0.41 7.86 8.62 -92.71 -0.80 7.06 16 42 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 46 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 50 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 51 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -72.45 403.54 1.03 -71.42 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.56 Total: 25.46 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 6.25 Total: 7.72 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.62 Total: -126.25 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.95 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.45 1.03 -71.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610350601.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.057 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds