Wall clock time and date at job start Wed Apr 1 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38149 * 119.54961 * 2 1 4 4 C 1.39812 * 119.00072 * 179.97438 * 3 2 1 5 5 C 1.48154 * 120.92225 * 179.97438 * 4 3 2 6 6 O 1.21516 * 119.99946 * 136.59713 * 5 4 3 7 7 N 1.34775 * 120.00158 * 316.60355 * 5 4 3 8 8 C 1.49720 * 122.75629 * 4.36318 * 7 5 4 9 9 C 1.53661 * 105.34329 * 111.69468 * 8 7 5 10 10 C 1.50960 * 111.88561 * 99.95385 * 9 8 7 11 11 H 1.09003 * 108.83016 * 57.70252 * 10 9 8 12 12 C 1.53584 * 111.28951 * 178.46690 * 10 9 8 13 13 N 1.47168 * 105.64873 * 150.29583 * 12 10 9 14 14 C 1.36941 * 126.10159 * 149.72099 * 13 12 10 15 15 H 1.08007 * 119.99927 * 347.69677 * 14 13 12 16 16 C 1.38811 * 120.00249 * 167.70032 * 14 13 12 17 17 N 1.31617 * 119.99945 * 349.56293 * 16 14 13 18 18 Si 1.86801 * 119.99957 * 169.56450 * 16 14 13 19 19 H 1.48494 * 109.47271 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47088 * 119.99798 * 18 16 14 21 21 H 1.48502 * 109.46724 * 239.99657 * 18 16 14 22 22 C 1.46771 * 107.80194 * 329.73557 * 13 12 10 23 23 C 1.53827 * 107.91334 * 20.29118 * 22 13 12 24 24 H 1.08997 * 111.01268 * 118.48864 * 23 22 13 25 25 C 1.51866 * 109.24327 * 241.15373 * 23 22 13 26 26 C 1.43652 * 122.75640 * 184.66116 * 7 5 4 27 27 C 1.39816 * 118.15690 * 0.02562 * 4 3 2 28 28 C 1.38143 * 119.00118 * 359.97438 * 27 4 3 29 29 C 1.50698 * 119.55245 * 180.02562 * 28 27 4 30 30 N 1.31810 * 120.89731 * 359.97438 * 28 27 4 31 31 H 1.08997 * 109.46922 * 90.00253 * 1 2 3 32 32 H 1.09004 * 109.47054 * 210.00083 * 1 2 3 33 33 H 1.08992 * 109.47466 * 329.99719 * 1 2 3 34 34 H 1.08006 * 120.49934 * 0.27614 * 3 2 1 35 35 H 1.09007 * 110.21595 * 230.67124 * 8 7 5 36 36 H 1.08997 * 110.21776 * 352.63959 * 8 7 5 37 37 H 1.09001 * 109.06230 * 339.31291 * 9 8 7 38 38 H 1.09004 * 108.92298 * 220.49842 * 9 8 7 39 39 H 1.09003 * 110.21302 * 31.24841 * 12 10 9 40 40 H 1.09003 * 110.21727 * 269.34038 * 12 10 9 41 41 H 0.97001 * 120.00569 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.77821 * 260.67861 * 22 13 12 43 43 H 1.08998 * 109.79475 * 139.91059 * 22 13 12 44 44 H 1.09005 * 108.91347 * 79.18472 * 25 23 22 45 45 H 1.08997 * 108.83601 * 320.59149 * 25 23 22 46 46 H 1.09000 * 108.42372 * 359.29701 * 26 7 5 47 47 H 1.08999 * 108.42086 * 116.55694 * 26 7 5 48 48 H 1.08003 * 120.50054 * 179.97438 * 27 4 3 49 49 H 1.09005 * 109.47035 * 90.00264 * 29 28 27 50 50 H 1.09004 * 109.47364 * 209.99725 * 29 28 27 51 51 H 1.09000 * 109.47622 * 330.00515 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1884 0.0005 5 6 4.3599 2.4520 0.0000 6 8 5.3289 2.5715 0.7234 7 7 3.9887 3.4690 -0.8027 8 6 2.7529 3.4252 -1.6468 9 6 1.8037 4.4658 -1.0324 10 6 1.8194 5.7650 -1.8011 11 1 1.5449 5.5644 -2.8367 12 6 0.8386 6.7814 -1.1982 13 7 1.4137 8.1056 -1.4839 14 6 0.7117 9.2646 -1.6818 15 1 -0.3573 9.2295 -1.8320 16 6 1.3739 10.4846 -1.6895 17 7 2.6310 10.5534 -1.3059 18 14 0.4807 12.0286 -2.2442 19 1 -0.9134 11.6850 -2.6229 20 1 0.4639 13.0161 -1.1352 21 1 1.1820 12.6120 -3.4160 22 6 2.8740 7.9625 -1.5191 23 6 3.1982 6.4780 -1.7588 24 1 3.7475 6.3434 -2.6906 25 6 3.9905 5.9419 -0.5793 26 6 4.7495 4.6815 -0.9234 27 6 4.2343 -0.0506 0.0005 28 6 3.4741 -1.2040 0.0005 29 6 4.1595 -2.5460 0.0011 30 7 2.1572 -1.1466 0.0010 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6491 2.1376 0.0045 35 1 2.9906 3.6917 -2.6768 36 1 2.3045 2.4325 -1.6071 37 1 2.1057 4.6592 -0.0031 38 1 0.7902 4.0647 -1.0349 39 1 0.7549 6.6314 -0.1218 40 1 -0.1397 6.6861 -1.6695 41 1 3.0937 11.4059 -1.3109 42 1 3.2992 8.2840 -0.5684 43 1 3.2845 8.5651 -2.3294 44 1 3.3037 5.7283 0.2398 45 1 4.6993 6.7042 -0.2559 46 1 5.6163 4.6111 -0.2663 47 1 5.1062 4.7636 -1.9501 48 1 5.3130 -0.1051 0.0005 49 1 4.3244 -2.8694 1.0289 50 1 3.5324 -3.2746 -0.5128 51 1 5.1176 -2.4650 -0.5123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946607761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:10 Heat of formation + Delta-G solvation = 30.575388 kcal Electronic energy + Delta-G solvation = -30722.585397 eV Core-core repulsion = 26815.520517 eV Total energy + Delta-G solvation = -3907.064880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.21744 -39.95298 -38.53010 -36.00785 -34.15129 -33.56032 -33.05474 -32.05618 -30.76499 -29.42803 -27.86578 -27.49033 -26.97579 -25.02204 -23.88493 -22.90827 -22.35392 -22.00056 -20.31469 -19.55562 -18.34208 -17.62615 -17.04897 -16.84311 -16.47702 -16.00903 -15.37384 -15.06641 -14.89900 -14.68996 -14.56699 -14.08440 -13.74271 -13.61786 -13.57778 -13.50069 -13.11751 -12.86862 -12.75797 -12.66291 -12.47051 -12.39772 -12.20807 -11.93250 -11.77968 -11.59654 -11.34157 -11.09652 -10.90835 -10.82295 -10.71292 -10.49335 -10.10675 -10.03857 -9.94868 -9.82552 -9.68403 -9.60934 -9.58324 -9.08288 -8.74662 -8.59357 -6.82145 -5.77559 -3.10341 0.55217 0.72617 2.50801 2.75813 3.37277 3.38379 3.43493 3.45815 3.81504 4.00705 4.34108 4.46720 4.62318 4.68958 4.76946 4.88059 4.95719 5.04907 5.11466 5.16097 5.20043 5.23320 5.28266 5.28959 5.31262 5.32233 5.48014 5.51121 5.58715 5.59572 5.70965 5.72872 5.75595 5.76280 5.88016 5.94461 6.01255 6.11540 6.20415 6.24752 6.31106 6.36767 6.52972 6.59845 6.66604 6.78197 6.96977 7.23137 7.46350 7.61733 7.63991 7.76337 7.93060 8.24569 9.17759 9.79565 10.49267 11.36015 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023025 B = 0.002460 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.760802 B =11380.860429 C =12334.148459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.132 3.868 3 C -0.154 4.154 4 C -0.067 4.067 5 C 0.564 3.436 6 O -0.532 6.532 7 N -0.596 5.596 8 C 0.094 3.906 9 C -0.132 4.132 10 C -0.096 4.096 11 H 0.064 0.936 12 C 0.140 3.860 13 N -0.598 5.598 14 C -0.231 4.231 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.915 5.915 18 Si 0.909 3.091 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.178 3.822 23 C -0.104 4.104 24 H 0.068 0.932 25 C -0.126 4.126 26 C 0.109 3.891 27 C -0.132 4.132 28 C 0.131 3.869 29 C -0.103 4.103 30 N -0.475 5.475 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.014 0.986 40 H 0.040 0.960 41 H 0.252 0.748 42 H 0.034 0.966 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.142 0.858 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -24.075 -0.157 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.006 4.006 3 C -0.174 4.174 4 C -0.078 4.078 5 C 0.352 3.648 6 O -0.409 6.409 7 N -0.328 5.328 8 C -0.027 4.027 9 C -0.170 4.170 10 C -0.115 4.115 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.323 5.323 14 C -0.359 4.359 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.562 5.562 18 Si 0.739 3.261 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.052 3.948 23 C -0.124 4.124 24 H 0.086 0.914 25 C -0.164 4.164 26 C -0.015 4.015 27 C -0.152 4.152 28 C -0.007 4.007 29 C -0.160 4.160 30 N -0.186 5.186 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.166 0.834 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.160 0.840 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.965 -24.519 0.240 24.539 hybrid contribution 0.087 1.878 -0.295 1.903 sum 1.052 -22.641 -0.055 22.665 Atomic orbital electron populations 1.20759 0.88147 1.03882 1.03498 1.21260 0.97229 0.87625 0.94445 1.22337 0.93393 1.00318 1.01371 1.20282 0.93982 0.94054 0.99498 1.18070 0.83951 0.82803 0.79971 1.90798 1.27924 1.81800 1.40360 1.47946 1.26630 1.15799 1.42431 1.22963 0.84347 1.00437 0.94994 1.21874 0.98788 0.95111 1.01217 1.21758 0.96955 0.93568 0.99264 0.91760 1.21251 0.94835 0.86214 0.96365 1.44335 1.01844 1.03263 1.82854 1.19046 0.91752 0.82943 1.42153 0.90628 1.24853 0.96629 0.97468 1.01375 1.69976 1.10223 1.24387 1.51592 0.86097 0.78713 0.83247 0.78011 1.20431 1.21783 1.21678 1.21054 0.84820 0.88544 1.00339 1.22247 0.94539 0.98745 0.96828 0.91375 1.21550 0.99842 0.95478 0.99527 1.20620 0.94931 0.83765 1.02150 1.21975 1.01742 0.91149 1.00357 1.21232 0.89167 0.95653 0.94637 1.20729 0.99862 0.92079 1.03376 1.67233 1.09595 1.29563 1.12240 0.89993 0.90240 0.90271 0.83448 0.89793 0.89098 0.90398 0.91351 0.96816 0.94194 0.93751 0.94788 0.92999 0.91111 0.90522 0.89963 0.91874 0.84037 0.90148 0.90240 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.17 36.01 0.37 -0.35 16 2 C 0.13 1.28 6.78 -82.63 -0.56 0.72 16 3 C -0.15 -1.54 7.14 -39.03 -0.28 -1.82 16 4 C -0.07 -0.78 5.36 -104.65 -0.56 -1.34 16 5 C 0.56 7.76 7.42 -12.19 -0.09 7.67 16 6 O -0.53 -9.05 16.52 5.35 0.09 -8.96 16 7 N -0.60 -7.45 2.66 -174.97 -0.47 -7.92 16 8 C 0.09 0.98 5.47 -1.90 -0.01 0.97 16 9 C -0.13 -1.56 3.73 -27.41 -0.10 -1.66 16 10 C -0.10 -1.48 2.61 -90.13 -0.24 -1.71 16 11 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 12 C 0.14 2.75 6.71 -3.37 -0.02 2.72 16 13 N -0.60 -14.87 3.37 -171.61 -0.58 -15.45 16 14 C -0.23 -6.34 10.25 -15.06 -0.15 -6.49 16 15 H 0.08 2.02 7.85 -52.48 -0.41 1.60 16 16 C -0.01 -0.17 5.39 -17.43 -0.09 -0.27 16 17 N -0.92 -26.70 10.83 55.49 0.60 -26.10 16 18 Si 0.91 21.86 29.57 -169.99 -5.03 16.83 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.18 4.12 4.97 -3.46 -0.02 4.10 16 23 C -0.10 -1.77 3.13 -89.56 -0.28 -2.05 16 24 H 0.07 1.09 7.78 -51.93 -0.40 0.69 16 25 C -0.13 -1.92 4.52 -28.26 -0.13 -2.05 16 26 C 0.11 1.45 5.69 -6.51 -0.04 1.41 16 27 C -0.13 -1.39 9.43 -39.03 -0.37 -1.76 16 28 C 0.13 1.28 6.78 -82.64 -0.56 0.72 16 29 C -0.10 -0.67 10.17 36.00 0.37 -0.31 16 30 N -0.47 -5.08 10.16 -5.79 -0.06 -5.14 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.44 8.07 -51.93 -0.42 0.03 16 34 H 0.15 1.30 5.76 -52.48 -0.30 1.00 16 35 H 0.08 0.84 7.85 -51.92 -0.41 0.43 16 36 H 0.09 0.81 4.52 -51.93 -0.23 0.57 16 37 H 0.08 1.04 5.58 -51.93 -0.29 0.75 16 38 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.01 0.28 7.96 -51.93 -0.41 -0.13 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.03 0.88 7.06 -51.93 -0.37 0.51 16 43 H 0.05 1.35 7.33 -51.93 -0.38 0.97 16 44 H 0.07 1.15 5.78 -51.93 -0.30 0.85 16 45 H 0.08 1.23 7.65 -51.93 -0.40 0.83 16 46 H 0.08 1.18 7.01 -51.93 -0.36 0.81 16 47 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 48 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -32.98 389.47 -10.37 -43.34 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -8.03 Total: -0.99 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.77 Total: -1.49 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.50 Total: -54.61 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.98 -10.37 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946607761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.919 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds