Wall clock time and date at job start Wed Apr 1 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38632 * 120.75464 * 2 1 4 4 C 1.38556 * 119.35134 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.54851 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90024 * 359.97438 * 4 3 2 7 7 C 1.32712 * 121.64695 * 0.02562 * 6 4 3 8 8 C 1.48178 * 119.72293 * 179.97438 * 7 6 4 9 9 O 1.21517 * 119.99507 * 173.92427 * 8 7 6 10 10 N 1.34769 * 120.00064 * 353.64799 * 8 7 6 11 11 C 1.49726 * 122.75833 * 352.95975 * 10 8 7 12 12 C 1.53173 * 105.59947 * 111.58415 * 11 10 8 13 13 C 1.50954 * 111.95738 * 99.83414 * 12 11 10 14 14 H 1.09001 * 109.52252 * 58.24594 * 13 12 11 15 15 C 1.53590 * 111.30921 * 178.50551 * 13 12 11 16 16 N 1.47168 * 105.65314 * 150.28839 * 15 13 12 17 17 C 1.36936 * 126.09844 * 149.75852 * 16 15 13 18 18 H 1.07997 * 120.00086 * 340.94185 * 17 16 15 19 19 C 1.38813 * 119.99757 * 160.93626 * 17 16 15 20 20 N 1.31624 * 119.99891 * 159.95810 * 19 17 16 21 21 Si 1.86799 * 120.00262 * 339.94985 * 19 17 16 22 22 H 1.48499 * 109.46864 * 84.65300 * 21 19 17 23 23 H 1.48498 * 109.47129 * 204.65295 * 21 19 17 24 24 H 1.48499 * 109.47242 * 324.65617 * 21 19 17 25 25 C 1.46779 * 107.80397 * 329.74517 * 16 15 13 26 26 C 1.53843 * 107.90708 * 20.29204 * 25 16 15 27 27 H 1.08993 * 111.54604 * 118.11752 * 26 25 16 28 28 C 1.51854 * 109.23047 * 241.13403 * 26 25 16 29 29 C 1.43641 * 122.75797 * 172.65928 * 10 8 7 30 30 C 1.38582 * 120.75609 * 180.25722 * 2 1 3 31 31 H 1.08994 * 109.47329 * 89.99698 * 1 2 3 32 32 H 1.08997 * 109.46802 * 210.00607 * 1 2 3 33 33 H 1.09002 * 109.46657 * 329.99809 * 1 2 3 34 34 H 1.07995 * 120.32232 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.47064 * 270.01604 * 5 4 3 36 36 H 1.08999 * 109.46878 * 30.01886 * 5 4 3 37 37 H 1.08996 * 109.47074 * 150.01912 * 5 4 3 38 38 H 1.08995 * 110.21393 * 230.60324 * 11 10 8 39 39 H 1.08999 * 110.21427 * 352.43194 * 11 10 8 40 40 H 1.09003 * 108.98194 * 220.47497 * 12 11 10 41 41 H 1.09005 * 108.98288 * 339.27979 * 12 11 10 42 42 H 1.09004 * 110.21223 * 269.33916 * 15 13 12 43 43 H 1.09000 * 110.20822 * 31.24666 * 15 13 12 44 44 H 0.96997 * 120.00104 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.77776 * 260.68414 * 25 16 15 46 46 H 1.08999 * 109.78143 * 139.90010 * 25 16 15 47 47 H 1.09011 * 108.91867 * 320.65274 * 28 26 25 48 48 H 1.08996 * 108.92255 * 79.29288 * 28 26 25 49 49 H 1.09000 * 108.42418 * 359.36629 * 29 10 8 50 50 H 1.08999 * 108.42208 * 116.62255 * 29 10 8 51 51 H 1.08000 * 120.47375 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2160 1.1914 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3762 2.4498 -0.0011 6 7 4.2487 0.0127 -0.0005 7 6 3.6082 -1.1496 -0.0005 8 6 4.3807 -2.4141 -0.0011 9 8 3.8044 -3.4781 0.1103 10 7 5.7218 -2.3844 -0.1308 11 6 6.4791 -1.1282 -0.4309 12 6 7.2775 -0.8153 0.8383 13 6 8.7169 -1.2552 0.7225 14 1 9.1809 -0.7622 -0.1317 15 6 9.5121 -0.9014 1.9879 16 7 10.5612 -1.9277 2.0976 17 6 11.8018 -1.7574 2.6516 18 1 12.2053 -0.7635 2.7770 19 6 12.5407 -2.8622 3.0521 20 7 13.8436 -2.7608 3.2087 21 14 11.6859 -4.4926 3.3690 22 1 11.5328 -5.2283 2.0882 23 1 12.4989 -5.3028 4.3112 24 1 10.3464 -4.2427 3.9594 25 6 10.0403 -3.1667 1.5075 26 6 8.8711 -2.7937 0.5798 27 1 9.0759 -3.0719 -0.4539 28 6 7.6026 -3.4615 1.0807 29 6 6.5427 -3.5542 0.0138 30 6 2.2158 -1.1909 -0.0053 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6937 2.1366 0.0004 35 1 4.5624 2.7613 -1.0289 36 1 3.8001 3.2191 0.5131 37 1 5.3266 2.3037 0.5120 38 1 7.1548 -1.2874 -1.2712 39 1 5.7875 -0.3155 -0.6532 40 1 7.2485 0.2592 1.0195 41 1 6.8176 -1.3295 1.6822 42 1 9.9611 0.0867 1.8866 43 1 8.8620 -0.9325 2.8622 44 1 14.3599 -3.5327 3.4889 45 1 9.6877 -3.8311 2.2964 46 1 10.8244 -3.6596 0.9327 47 1 7.8451 -4.4664 1.4267 48 1 7.2069 -2.8860 1.9176 49 1 5.8973 -4.4016 0.2450 50 1 7.0339 -3.7504 -0.9393 51 1 1.6960 -2.1376 -0.0092 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946657341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:27 Heat of formation + Delta-G solvation = 43.768885 kcal Electronic energy + Delta-G solvation = -30989.775114 eV Core-core repulsion = 27083.282347 eV Total energy + Delta-G solvation = -3906.492767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.24137 -39.93453 -38.59664 -36.10963 -34.68281 -33.35882 -32.96856 -32.21699 -31.11405 -28.50321 -28.20263 -27.73881 -27.63749 -25.15359 -23.90419 -22.95657 -22.26508 -21.62219 -20.54097 -19.78710 -18.47876 -17.77303 -16.93695 -16.76826 -16.41126 -16.00827 -15.75391 -15.34865 -14.92314 -14.62281 -14.45915 -13.97502 -13.90214 -13.76702 -13.64673 -13.58717 -13.22665 -13.06006 -12.85711 -12.64276 -12.60342 -12.41939 -12.32029 -12.16039 -11.98195 -11.72631 -11.46264 -11.31727 -11.01001 -10.81710 -10.63721 -10.43108 -10.19222 -10.02266 -9.93957 -9.83818 -9.69067 -9.36079 -9.30141 -9.17069 -8.69020 -8.60760 -6.98935 -5.90052 -3.21298 0.32848 0.78271 2.49277 2.84730 3.38606 3.48571 3.51228 3.53730 3.69922 4.14128 4.18668 4.57325 4.58540 4.65491 4.74499 4.89615 4.95284 4.97447 5.05383 5.10345 5.14116 5.17499 5.22583 5.24839 5.28264 5.34360 5.38652 5.46335 5.52110 5.59042 5.68119 5.72164 5.81814 5.85413 5.89311 5.90539 6.01451 6.07066 6.16403 6.23962 6.34892 6.39448 6.43235 6.49876 6.59785 6.66593 6.80122 6.87817 6.95614 7.31433 7.43496 7.78602 8.03102 8.35991 8.88515 9.73728 10.25429 11.26432 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.002774 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.506342 B =10091.545605 C =10995.022042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.154 4.154 4 C 0.128 3.872 5 C -0.107 4.107 6 N -0.450 5.450 7 C 0.096 3.904 8 C 0.575 3.425 9 O -0.540 6.540 10 N -0.586 5.586 11 C 0.080 3.920 12 C -0.118 4.118 13 C -0.099 4.099 14 H 0.068 0.932 15 C 0.140 3.860 16 N -0.607 5.607 17 C -0.238 4.238 18 H 0.092 0.908 19 C 0.019 3.981 20 N -0.913 5.913 21 Si 0.888 3.112 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.276 1.276 25 C 0.116 3.884 26 C -0.090 4.090 27 H 0.076 0.924 28 C -0.130 4.130 29 C 0.109 3.891 30 C -0.122 4.122 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.141 0.859 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.019 0.981 44 H 0.262 0.738 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.062 0.938 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.393 9.398 -10.248 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.174 4.174 4 C -0.011 4.011 5 C -0.164 4.164 6 N -0.164 5.164 7 C -0.042 4.042 8 C 0.362 3.638 9 O -0.417 6.417 10 N -0.317 5.317 11 C -0.041 4.041 12 C -0.156 4.156 13 C -0.118 4.118 14 H 0.087 0.913 15 C 0.014 3.986 16 N -0.332 5.332 17 C -0.365 4.365 18 H 0.110 0.890 19 C -0.179 4.179 20 N -0.557 5.557 21 Si 0.719 3.281 22 H -0.213 1.213 23 H -0.232 1.232 24 H -0.202 1.202 25 C -0.010 4.010 26 C -0.109 4.109 27 H 0.094 0.906 28 C -0.169 4.169 29 C -0.015 4.015 30 C -0.142 4.142 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.158 0.842 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.545 8.722 -10.080 29.704 hybrid contribution -1.021 -1.090 0.357 1.535 sum -27.566 7.632 -9.723 30.210 Atomic orbital electron populations 1.20847 0.89639 1.03698 1.03160 1.20357 0.97135 0.92503 0.95188 1.22061 0.94787 0.98876 1.01679 1.21494 0.91302 0.94134 0.94204 1.20782 1.00717 0.91448 1.03492 1.67511 1.38803 0.97682 1.12374 1.21111 0.91589 0.91951 0.99516 1.17729 0.81604 0.87288 0.77144 1.90772 1.69359 1.30380 1.51206 1.47855 1.04855 1.11585 1.67369 1.23497 0.96147 0.87252 0.97218 1.21568 0.94576 1.01328 0.98122 1.21835 0.94813 0.95282 0.99904 0.91350 1.21317 0.89934 0.93390 0.93943 1.44660 1.12906 1.07302 1.68320 1.18672 0.88520 0.95074 1.34258 0.89031 1.25001 0.95393 0.97618 0.99896 1.69817 1.04488 1.30720 1.50679 0.86940 0.78784 0.84718 0.77703 1.21262 1.23234 1.20216 1.21708 0.94262 0.90730 0.94268 1.21964 0.94513 0.95164 0.99309 0.90608 1.21505 0.94782 1.01753 0.98823 1.20456 0.93370 0.88153 0.99531 1.21962 0.93672 0.99577 0.99032 0.90241 0.90656 0.90748 0.84369 0.90031 0.90462 0.89766 0.91426 0.84204 0.91422 0.91172 0.93271 0.96282 0.92777 0.95723 0.93139 0.90951 0.90765 0.90098 0.91927 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.06 36.01 0.36 -0.16 16 2 C -0.04 -0.33 5.91 -104.35 -0.62 -0.95 16 3 C -0.15 -1.05 9.45 -39.32 -0.37 -1.42 16 4 C 0.13 1.05 6.78 -82.61 -0.56 0.49 16 5 C -0.11 -0.59 10.17 36.01 0.37 -0.23 16 6 N -0.45 -4.76 6.09 -6.06 -0.04 -4.80 16 7 C 0.10 1.14 6.66 -83.01 -0.55 0.59 16 8 C 0.58 8.18 7.72 -12.18 -0.09 8.08 16 9 O -0.54 -8.97 15.89 5.35 0.09 -8.88 16 10 N -0.59 -7.87 2.67 -175.53 -0.47 -8.34 16 11 C 0.08 0.95 5.76 -2.15 -0.01 0.94 16 12 C -0.12 -1.55 4.58 -27.67 -0.13 -1.68 16 13 C -0.10 -1.57 2.61 -90.14 -0.23 -1.81 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.14 2.79 6.71 -3.37 -0.02 2.77 16 16 N -0.61 -14.98 3.18 -171.60 -0.55 -15.52 16 17 C -0.24 -6.89 10.62 -15.06 -0.16 -7.05 16 18 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 19 C 0.02 0.57 5.46 -17.43 -0.10 0.47 16 20 N -0.91 -28.68 13.97 55.49 0.78 -27.90 16 21 Si 0.89 23.38 24.25 -169.99 -4.12 19.25 16 22 H -0.29 -7.24 6.59 56.52 0.37 -6.87 16 23 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 24 H -0.28 -7.20 6.47 56.52 0.37 -6.83 16 25 C 0.12 2.57 4.36 -3.45 -0.02 2.55 16 26 C -0.09 -1.53 3.14 -89.56 -0.28 -1.81 16 27 H 0.08 1.18 7.76 -51.93 -0.40 0.78 16 28 C -0.13 -2.00 4.51 -28.48 -0.13 -2.12 16 29 C 0.11 1.49 5.66 -6.73 -0.04 1.45 16 30 C -0.12 -1.21 9.34 -39.06 -0.36 -1.57 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 33 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 39 H 0.14 1.55 4.32 -69.60 -0.30 1.25 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.04 5.57 -51.93 -0.29 0.75 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.39 7.96 -51.93 -0.41 -0.02 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.03 0.59 4.28 -51.93 -0.22 0.37 16 46 H 0.05 1.20 6.83 -51.93 -0.35 0.85 16 47 H 0.07 1.12 7.66 -51.92 -0.40 0.72 16 48 H 0.07 1.21 5.78 -51.93 -0.30 0.91 16 49 H 0.08 1.16 7.03 -51.93 -0.37 0.80 16 50 H 0.06 0.80 7.70 -51.93 -0.40 0.40 16 51 H 0.15 1.41 7.66 -52.49 -0.40 1.01 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -34.44 383.66 -9.58 -44.02 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.10 Total: -2.14 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.95 Total: -1.46 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.28 Total: -56.57 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.12 Total: 19.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.44 -9.58 -44.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946657341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.786 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds