Wall clock time and date at job start Wed Apr 1 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38598 * 120.32213 * 2 1 4 4 N 1.31499 * 120.90116 * 179.72071 * 3 2 1 5 5 C 1.32743 * 121.63933 * 0.52693 * 4 3 2 6 6 C 1.48171 * 119.72483 * 179.75379 * 5 4 3 7 7 O 1.21514 * 120.00271 * 104.04254 * 6 5 4 8 8 N 1.34779 * 119.99724 * 284.04536 * 6 5 4 9 9 C 1.43508 * 122.54745 * 174.93340 * 8 6 5 10 10 C 1.51728 * 114.25287 * 122.96888 * 9 8 6 11 11 C 1.51150 * 111.88578 * 82.64315 * 10 9 8 12 12 H 1.08994 * 110.23600 * 34.32145 * 11 10 9 13 13 C 1.53399 * 110.92891 * 156.74536 * 11 10 9 14 14 N 1.46607 * 108.10664 * 102.74027 * 13 11 10 15 15 C 1.36937 * 125.31519 * 178.65008 * 14 13 11 16 16 H 1.08001 * 120.00130 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99982 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00178 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47098 * 59.99818 * 19 17 15 21 21 H 1.48498 * 109.47291 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47116 * 299.99977 * 19 17 15 23 23 C 1.46659 * 109.36757 * 358.65198 * 14 13 11 24 24 C 1.54193 * 106.89509 * 18.25067 * 23 14 13 25 25 H 1.08998 * 111.45112 * 91.58254 * 24 23 14 26 26 C 1.51853 * 109.36922 * 214.09976 * 24 23 14 27 27 C 1.49549 * 122.55110 * 354.95923 * 8 6 5 28 28 C 1.39272 * 120.55666 * 359.47474 * 5 4 3 29 29 C 1.50696 * 120.47229 * 180.23567 * 28 5 4 30 30 C 1.38582 * 120.32471 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47334 * 270.02496 * 1 2 3 32 32 H 1.09001 * 109.47345 * 30.02401 * 1 2 3 33 33 H 1.09003 * 109.46920 * 150.02375 * 1 2 3 34 34 H 1.08005 * 119.55224 * 359.97267 * 3 2 1 35 35 H 1.08999 * 108.52696 * 244.20282 * 9 8 6 36 36 H 1.08993 * 108.52785 * 1.73114 * 9 8 6 37 37 H 1.09008 * 108.99422 * 203.25979 * 10 9 8 38 38 H 1.08996 * 108.99874 * 322.10027 * 10 9 8 39 39 H 1.08995 * 109.74537 * 222.41119 * 13 11 10 40 40 H 1.09003 * 109.74950 * 343.07136 * 13 11 10 41 41 H 0.96997 * 120.00341 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.96337 * 137.64193 * 23 14 13 43 43 H 1.08990 * 109.96741 * 258.86590 * 23 14 13 44 44 H 1.09002 * 109.00627 * 54.38544 * 26 24 23 45 45 H 1.09001 * 109.00402 * 295.52681 * 26 24 23 46 46 H 1.09001 * 110.26778 * 131.21619 * 27 8 6 47 47 H 1.09003 * 110.38532 * 9.18415 * 27 8 6 48 48 H 1.09007 * 109.47267 * 94.83739 * 29 28 5 49 49 H 1.09000 * 109.47292 * 214.83845 * 29 28 5 50 50 H 1.09002 * 109.47148 * 334.84463 * 29 28 5 51 51 H 1.07997 * 120.75434 * 0.03649 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1964 0.0000 4 7 3.5217 1.2097 0.0055 5 6 4.2294 0.0867 0.0008 6 6 5.7097 0.1512 0.0018 7 8 6.3274 -0.0820 1.0220 8 7 6.3711 0.4686 -1.1288 9 6 7.7941 0.6505 -1.1656 10 6 8.5121 -0.2490 -2.1543 11 6 8.4724 0.3112 -3.5575 12 1 8.5150 1.4000 -3.5301 13 6 9.6260 -0.2445 -4.4022 14 7 9.0852 -1.2820 -5.2856 15 6 9.8071 -1.9913 -6.2082 16 1 10.8639 -1.8034 -6.3274 17 6 9.1804 -2.9520 -6.9901 18 7 7.8924 -3.1807 -6.8452 19 14 10.1652 -3.9201 -8.2480 20 1 11.2478 -4.6680 -7.5599 21 1 9.2701 -4.8760 -8.9481 22 1 10.7604 -2.9853 -9.2366 23 6 7.6505 -1.4416 -5.0271 24 6 7.1849 -0.1723 -4.2857 25 1 6.8291 0.5877 -4.9813 26 6 6.0944 -0.5393 -3.2947 27 6 5.6779 0.6584 -2.4402 28 6 3.5923 -1.1518 0.0009 29 6 4.3976 -2.4255 0.0009 30 6 2.2067 -1.1962 0.0005 31 1 -0.3634 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6647 2.1305 -0.0004 35 1 8.0040 1.6880 -1.4257 36 1 8.1937 0.4592 -0.1698 37 1 9.5517 -0.3577 -1.8448 38 1 8.0369 -1.2299 -2.1514 39 1 10.0641 0.5555 -4.9989 40 1 10.3857 -0.6754 -3.7501 41 1 7.4545 -3.8517 -7.3918 42 1 7.1115 -1.5421 -5.9691 43 1 7.4798 -2.3202 -4.4052 44 1 6.4604 -1.3314 -2.6414 45 1 5.2254 -0.9043 -3.8421 46 1 6.0032 1.5875 -2.9083 47 1 4.5968 0.6650 -2.3008 48 1 4.5186 -2.7789 1.0250 49 1 3.8789 -3.1834 -0.5861 50 1 5.3781 -2.2355 -0.4359 51 1 1.6844 -2.1415 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946689730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:23 Heat of formation + Delta-G solvation = 25.836601 kcal Electronic energy + Delta-G solvation = -31128.363066 eV Core-core repulsion = 27221.092696 eV Total energy + Delta-G solvation = -3907.270369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.12365 -39.83941 -38.38134 -35.85645 -34.02168 -33.90657 -33.05958 -32.23661 -30.73259 -28.44157 -27.74245 -27.52859 -27.02686 -24.55151 -23.84602 -22.92737 -22.62619 -21.55023 -20.12911 -19.82652 -18.28334 -17.87204 -17.23139 -16.92774 -16.44555 -15.26386 -15.16451 -15.08639 -14.71177 -14.62570 -14.23582 -13.97219 -13.64283 -13.56770 -13.50467 -13.34276 -13.06959 -12.97513 -12.86563 -12.68846 -12.64742 -12.48520 -12.17685 -11.87424 -11.69115 -11.40052 -11.23742 -11.11480 -10.82691 -10.72224 -10.70795 -10.31588 -10.06446 -10.00190 -9.86958 -9.74617 -9.63860 -9.61691 -9.42817 -9.02067 -8.66451 -8.53996 -6.79552 -5.66164 -3.04459 0.61727 0.96139 2.42016 2.85833 3.40207 3.40661 3.44917 3.46004 4.00965 4.31174 4.39305 4.50489 4.58232 4.64996 4.82603 4.92579 5.02921 5.08899 5.15469 5.18295 5.22426 5.27030 5.36762 5.41568 5.44496 5.45689 5.50212 5.55854 5.61485 5.74242 5.79132 5.85201 5.86474 5.90523 5.95142 6.00833 6.12912 6.19134 6.31872 6.34800 6.42426 6.53845 6.59948 6.61911 6.69340 6.81687 7.05980 7.34347 7.56074 7.57762 7.66620 7.86880 8.05156 8.36281 9.25422 9.86408 10.50575 11.39699 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002830 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.681719 B = 9891.305267 C =10753.143130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C 0.093 3.907 4 N -0.451 5.451 5 C 0.091 3.909 6 C 0.588 3.412 7 O -0.533 6.533 8 N -0.592 5.592 9 C 0.110 3.890 10 C -0.125 4.125 11 C -0.092 4.092 12 H 0.066 0.934 13 C 0.142 3.858 14 N -0.602 5.602 15 C -0.224 4.224 16 H 0.076 0.924 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.171 3.829 24 C -0.108 4.108 25 H 0.067 0.933 26 C -0.128 4.128 27 C 0.113 3.887 28 C -0.089 4.089 29 C -0.117 4.117 30 C -0.079 4.079 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.014 0.986 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.071 0.929 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.757 7.408 13.464 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.067 4.067 4 N -0.160 5.160 5 C -0.048 4.048 6 C 0.374 3.626 7 O -0.408 6.408 8 N -0.324 5.324 9 C -0.013 4.013 10 C -0.163 4.163 11 C -0.111 4.111 12 H 0.085 0.915 13 C 0.016 3.984 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.046 3.954 24 C -0.127 4.127 25 H 0.086 0.914 26 C -0.166 4.166 27 C -0.008 4.008 28 C -0.092 4.092 29 C -0.174 4.174 30 C -0.105 4.105 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.178 0.822 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.032 0.968 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.965 7.908 13.888 21.223 hybrid contribution 0.012 -1.277 -0.737 1.475 sum -13.953 6.630 13.151 20.288 Atomic orbital electron populations 1.20759 0.89830 1.03477 1.02784 1.21107 0.97811 0.94033 0.99507 1.22685 0.89206 0.97709 0.97062 1.67620 1.08447 1.29577 1.10340 1.20814 0.94111 0.89366 1.00515 1.17705 0.85639 0.76262 0.83030 1.90791 1.68092 1.49740 1.32219 1.47870 1.08109 1.67590 1.08834 1.20692 0.79732 0.99570 1.01349 1.21467 1.00505 1.00190 0.94137 1.21782 0.96503 0.98794 0.94047 0.91520 1.21132 0.93923 0.91506 0.91839 1.44190 1.05376 1.41809 1.41431 1.19029 0.92176 1.13257 1.10760 0.90592 1.24777 0.96150 0.99531 1.00139 1.69875 1.08321 1.36216 1.42701 0.86179 0.78716 0.79599 0.81167 1.21249 1.21617 1.21196 1.21438 0.84985 0.90126 0.98853 1.22413 0.93307 1.00653 0.96372 0.91412 1.21905 0.99346 0.97403 0.97953 1.22406 0.96719 0.99776 0.81947 1.20827 0.94590 0.95752 0.98021 1.20840 0.99775 0.93528 1.03300 1.21361 0.92767 0.98629 0.97756 0.90652 0.90869 0.91036 0.82236 0.91891 0.89876 0.90891 0.90656 0.96231 0.96122 0.93808 0.89315 0.96830 0.90638 0.91419 0.89849 0.90588 0.90072 0.90370 0.90958 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.03 36.01 0.36 -0.19 16 2 C -0.12 -1.02 5.91 -104.36 -0.62 -1.63 16 3 C 0.09 0.90 10.86 -17.56 -0.19 0.71 16 4 N -0.45 -5.84 10.11 -9.80 -0.10 -5.94 16 5 C 0.09 1.25 4.81 -83.01 -0.40 0.85 16 6 C 0.59 9.13 5.76 -12.18 -0.07 9.06 16 7 O -0.53 -9.75 16.61 5.35 0.09 -9.66 16 8 N -0.59 -8.40 2.61 -175.31 -0.46 -8.86 16 9 C 0.11 1.52 5.74 -6.27 -0.04 1.49 16 10 C -0.12 -1.90 4.77 -28.31 -0.14 -2.03 16 11 C -0.09 -1.53 2.78 -89.95 -0.25 -1.78 16 12 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 13 C 0.14 2.93 6.82 -3.78 -0.03 2.90 16 14 N -0.60 -15.26 3.38 -172.05 -0.58 -15.84 16 15 C -0.22 -6.23 10.25 -15.06 -0.15 -6.38 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 18 N -0.92 -26.65 10.16 55.49 0.56 -26.08 16 19 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.17 4.01 5.13 -3.33 -0.02 4.00 16 24 C -0.11 -1.90 2.93 -89.18 -0.26 -2.16 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 C -0.13 -1.91 4.50 -27.36 -0.12 -2.03 16 27 C 0.11 1.47 6.08 -2.39 -0.01 1.46 16 28 C -0.09 -1.04 5.93 -104.10 -0.62 -1.66 16 29 C -0.12 -1.27 9.71 36.00 0.35 -0.92 16 30 C -0.08 -0.72 9.55 -39.31 -0.38 -1.10 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 34 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 36 H 0.08 1.21 7.00 -51.93 -0.36 0.85 16 37 H 0.07 1.07 7.53 -51.92 -0.39 0.68 16 38 H 0.07 1.29 5.86 -51.93 -0.30 0.99 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.02 0.43 7.40 -51.93 -0.38 0.05 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.09 2.37 6.19 -51.93 -0.32 2.05 16 43 H 0.01 0.35 7.72 -51.93 -0.40 -0.05 16 44 H 0.08 1.23 5.47 -51.93 -0.28 0.94 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.02 7.81 -51.93 -0.41 0.61 16 47 H 0.08 0.95 6.55 -51.93 -0.34 0.61 16 48 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 49 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 51 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -32.94 391.85 -10.39 -43.34 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.12 Total: -0.05 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.67 Total: 0.17 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.57 Total: -56.72 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.94 -10.39 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946689730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.172 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds