Wall clock time and date at job start Wed Apr 1 2020 01:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31881 * 119.61801 * 2 1 4 4 C 1.31849 * 121.72427 * 179.97438 * 3 2 1 5 5 C 1.38234 * 120.76817 * 0.02562 * 4 3 2 6 6 C 1.38633 * 119.15188 * 359.76777 * 5 4 3 7 7 C 1.38180 * 119.61144 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.42078 * 359.97438 * 7 2 1 9 9 C 1.50695 * 109.47318 * 84.99747 * 8 7 2 10 10 O 1.21283 * 119.99996 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00315 * 179.97438 * 9 8 7 12 12 C 1.49731 * 122.75084 * 0.02562 * 11 9 8 13 13 C 1.53176 * 105.59468 * 111.59138 * 12 11 9 14 14 C 1.50961 * 111.95717 * 99.83536 * 13 12 11 15 15 H 1.08995 * 109.51886 * 58.24605 * 14 13 12 16 16 C 1.53588 * 111.30653 * 178.50734 * 14 13 12 17 17 N 1.46785 * 105.59883 * 150.43327 * 16 14 13 18 18 C 1.36937 * 126.06015 * 149.69109 * 17 16 14 19 19 H 1.08002 * 120.00593 * 349.89848 * 18 17 16 20 20 C 1.38818 * 119.99872 * 169.89916 * 18 17 16 21 21 N 1.31618 * 120.00001 * 350.57541 * 20 18 17 22 22 Si 1.86795 * 120.00125 * 170.58208 * 20 18 17 23 23 H 1.48500 * 109.47141 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47337 * 120.00005 * 22 20 18 25 25 H 1.48501 * 109.46891 * 239.99713 * 22 20 18 26 26 C 1.46774 * 107.83633 * 329.61619 * 17 16 14 27 27 C 1.53832 * 107.91127 * 20.39996 * 26 17 16 28 28 H 1.09006 * 111.55002 * 118.11387 * 27 26 17 29 29 C 1.51848 * 109.23351 * 241.13296 * 27 26 17 30 30 C 1.43643 * 122.76272 * 179.97438 * 11 9 8 31 31 H 1.09003 * 109.47168 * 269.98094 * 1 2 3 32 32 H 1.09002 * 109.47119 * 29.97365 * 1 2 3 33 33 H 1.08995 * 109.47773 * 149.97486 * 1 2 3 34 34 H 1.08004 * 119.62132 * 179.97438 * 4 3 2 35 35 H 1.07992 * 120.42390 * 180.02562 * 5 4 3 36 36 H 1.08003 * 120.78179 * 180.23584 * 6 5 4 37 37 H 1.08993 * 109.46744 * 324.99578 * 8 7 2 38 38 H 1.09000 * 109.46786 * 204.99850 * 8 7 2 39 39 H 1.08992 * 110.21529 * 230.60478 * 12 11 9 40 40 H 1.09000 * 110.21536 * 352.43605 * 12 11 9 41 41 H 1.09007 * 108.98376 * 220.47236 * 13 12 11 42 42 H 1.09001 * 108.98192 * 339.19462 * 13 12 11 43 43 H 1.09000 * 110.21069 * 269.33683 * 16 14 13 44 44 H 1.08997 * 110.21125 * 31.24259 * 16 14 13 45 45 H 0.96996 * 120.00420 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.77950 * 260.78481 * 26 17 16 47 47 H 1.09004 * 109.79922 * 140.02243 * 26 17 16 48 48 H 1.09002 * 108.91932 * 79.20654 * 29 27 26 49 49 H 1.08997 * 108.91630 * 320.56010 * 29 27 26 50 50 H 1.08996 * 108.42233 * 116.61313 * 30 11 9 51 51 H 1.09003 * 108.28617 * 359.25705 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 0.0005 5 6 4.2267 0.0340 0.0005 6 6 3.5764 -1.1904 0.0049 7 6 2.1898 -1.2013 -0.0005 8 6 1.4370 -2.5068 -0.0005 9 6 1.0782 -2.8798 -1.4158 10 8 1.4015 -2.1565 -2.3341 11 7 0.3981 -4.0172 -1.6612 12 6 -0.0319 -4.9542 -0.5754 13 6 -1.5598 -4.8559 -0.5277 14 6 -2.2221 -6.0026 -1.2526 15 1 -1.9028 -6.9461 -0.8101 16 6 -3.7525 -5.9093 -1.1641 17 7 -4.2579 -6.5398 -2.3895 18 6 -5.4474 -7.2051 -2.5220 19 1 -6.0329 -7.4445 -1.6466 20 6 -5.9008 -7.5721 -3.7817 21 7 -5.2894 -7.1237 -4.8576 22 14 -7.3786 -8.7021 -3.9500 23 1 -7.8815 -9.0637 -2.6003 24 1 -8.4497 -8.0068 -4.7079 25 1 -6.9792 -9.9347 -4.6756 26 6 -3.2626 -6.3285 -3.4472 27 6 -1.9158 -6.0143 -2.7735 28 1 -1.1623 -6.7639 -3.0159 29 6 -1.4578 -4.6287 -3.1932 30 6 0.0252 -4.4296 -2.9857 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 3.9753 2.1528 0.0001 35 1 5.3056 0.0802 0.0013 36 1 4.1366 -2.1137 0.0089 37 1 0.5266 -2.4012 0.5893 38 1 2.0626 -3.2869 0.4333 39 1 0.2726 -5.9730 -0.8146 40 1 0.3973 -4.6476 0.3785 41 1 -1.8831 -4.8604 0.5133 42 1 -1.8693 -3.9183 -0.9895 43 1 -4.1127 -6.4494 -0.2885 44 1 -4.0642 -4.8658 -1.1182 45 1 -5.6059 -7.3804 -5.7378 46 1 -3.5647 -5.4911 -4.0761 47 1 -3.1705 -7.2301 -4.0529 48 1 -1.9992 -3.8852 -2.6082 49 1 -1.6894 -4.4845 -4.2485 50 1 0.5332 -5.3674 -3.2103 51 1 0.3730 -3.6737 -3.6899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946779764.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:14 Heat of formation + Delta-G solvation = 26.247018 kcal Electronic energy + Delta-G solvation = -30580.857366 eV Core-core repulsion = 26673.604794 eV Total energy + Delta-G solvation = -3907.252572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.94307 -40.07601 -38.54517 -35.92235 -34.11058 -33.19799 -33.11202 -32.33818 -30.79880 -29.25503 -27.83826 -27.36307 -26.94295 -24.38808 -23.36384 -22.82332 -22.52339 -21.77419 -20.30244 -19.36956 -18.29655 -17.45919 -17.10860 -16.87533 -16.64821 -16.04616 -15.51521 -15.09741 -14.84150 -14.59954 -14.55137 -14.14819 -13.65390 -13.60764 -13.46767 -13.30955 -13.18460 -12.88159 -12.70959 -12.63640 -12.40646 -12.36981 -12.28035 -11.78469 -11.63286 -11.53615 -11.30916 -11.05941 -10.86295 -10.80222 -10.68342 -10.19736 -10.03270 -9.94474 -9.80541 -9.74183 -9.64777 -9.62581 -9.56969 -8.98715 -8.67483 -8.56904 -6.82620 -5.76162 -3.08471 0.86574 1.07474 2.51298 2.90719 3.37915 3.43952 3.46360 3.56927 4.09398 4.31695 4.40668 4.48198 4.51427 4.65161 4.73098 4.79627 4.98852 5.04434 5.07513 5.10602 5.23717 5.29887 5.33872 5.35562 5.39045 5.42666 5.46995 5.50430 5.56451 5.63497 5.78298 5.86691 5.92758 5.93956 5.97721 6.00685 6.04710 6.15922 6.24922 6.28979 6.40863 6.49341 6.56956 6.64051 6.69445 6.82043 6.99761 7.36585 7.51256 7.62003 7.78464 7.80358 8.10113 8.26092 9.19298 9.81168 10.49956 11.37206 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028478 B = 0.002183 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.981256 B =12824.215854 C =12928.487346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.147 3.853 3 N -0.486 5.486 4 C 0.100 3.900 5 C -0.180 4.180 6 C -0.062 4.062 7 C -0.116 4.116 8 C -0.098 4.098 9 C 0.522 3.478 10 O -0.536 6.536 11 N -0.607 5.607 12 C 0.107 3.893 13 C -0.130 4.130 14 C -0.098 4.098 15 H 0.063 0.937 16 C 0.140 3.860 17 N -0.599 5.599 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.917 5.917 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.178 3.822 27 C -0.104 4.104 28 H 0.067 0.933 29 C -0.125 4.125 30 C 0.109 3.891 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.013 0.987 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.059 0.941 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.757 9.621 12.874 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.200 4.200 6 C -0.087 4.087 7 C -0.118 4.118 8 C -0.138 4.138 9 C 0.310 3.690 10 O -0.413 6.413 11 N -0.341 5.341 12 C -0.015 4.015 13 C -0.169 4.169 14 C -0.118 4.118 15 H 0.082 0.918 16 C 0.013 3.987 17 N -0.323 5.323 18 C -0.358 4.358 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.052 3.948 27 C -0.123 4.123 28 H 0.085 0.915 29 C -0.164 4.164 30 C -0.015 4.015 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.031 0.969 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.077 0.923 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.314 10.727 12.193 24.477 hybrid contribution -0.259 -1.521 -0.246 1.563 sum 18.055 9.206 11.947 23.526 Atomic orbital electron populations 1.20772 0.88937 1.03976 1.02862 1.21085 0.96913 0.87676 0.93408 1.67527 1.10084 1.29108 1.12766 1.22718 0.89499 0.98432 0.95035 1.22060 1.01348 0.93383 1.03228 1.21425 0.93538 0.98573 0.95213 1.20097 0.94197 0.94928 1.02571 1.20631 1.02109 0.95508 0.95553 1.20255 0.77756 0.80152 0.90859 1.90732 1.53781 1.50469 1.46289 1.48078 1.55211 1.21804 1.08984 1.22503 0.95278 0.93844 0.89850 1.21751 0.93619 1.00609 1.00874 1.21769 0.97295 0.97169 0.95518 0.91830 1.21196 0.90750 0.95609 0.91098 1.44266 1.18870 1.63243 1.05969 1.19063 0.95880 1.28272 0.92591 0.90560 1.24836 0.99080 1.01069 0.95420 1.69974 1.42391 1.47018 0.96962 0.86086 0.82037 0.80342 0.77542 1.20457 1.21792 1.21700 1.21072 0.83439 1.00199 0.90068 1.22227 0.99890 0.95340 0.94875 0.91464 1.21532 0.94021 0.98415 1.02385 1.20547 0.96588 1.00507 0.83814 0.90209 0.90187 0.90774 0.82854 0.84858 0.85021 0.87383 0.87866 0.89927 0.90021 0.91476 0.90481 0.94299 0.96943 0.93761 0.95092 0.92508 0.91192 0.90760 0.92264 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.39 36.01 0.34 -0.76 16 2 C 0.15 1.72 6.78 -82.59 -0.56 1.16 16 3 N -0.49 -5.97 10.27 -9.47 -0.10 -6.07 16 4 C 0.10 0.98 11.18 -17.55 -0.20 0.78 16 5 C -0.18 -1.54 10.11 -39.44 -0.40 -1.94 16 6 C -0.06 -0.57 9.84 -39.28 -0.39 -0.95 16 7 C -0.12 -1.21 4.39 -104.48 -0.46 -1.66 16 8 C -0.10 -0.84 3.63 -29.04 -0.11 -0.95 16 9 C 0.52 6.35 6.98 -10.99 -0.08 6.28 16 10 O -0.54 -8.76 15.54 5.56 0.09 -8.67 16 11 N -0.61 -6.97 2.67 -174.30 -0.47 -7.44 16 12 C 0.11 0.98 6.16 -2.15 -0.01 0.97 16 13 C -0.13 -1.49 4.57 -27.66 -0.13 -1.61 16 14 C -0.10 -1.50 2.60 -90.20 -0.23 -1.73 16 15 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.14 2.76 6.70 -3.58 -0.02 2.73 16 17 N -0.60 -14.93 3.36 -171.92 -0.58 -15.50 16 18 C -0.23 -6.32 10.26 -15.06 -0.15 -6.48 16 19 H 0.08 2.04 7.85 -52.49 -0.41 1.62 16 20 C -0.01 -0.20 5.41 -17.43 -0.09 -0.30 16 21 N -0.92 -26.78 10.71 55.49 0.59 -26.18 16 22 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.18 4.13 4.98 -3.46 -0.02 4.11 16 27 C -0.10 -1.76 3.13 -89.63 -0.28 -2.05 16 28 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 29 C -0.13 -1.91 4.52 -28.29 -0.13 -2.03 16 30 C 0.11 1.44 5.70 -6.53 -0.04 1.40 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.77 6.15 -51.93 -0.32 0.45 16 34 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 37 H 0.11 0.75 6.92 -51.93 -0.36 0.39 16 38 H 0.10 0.62 7.73 -51.93 -0.40 0.22 16 39 H 0.08 0.74 7.84 -51.93 -0.41 0.34 16 40 H 0.08 0.51 6.43 -51.93 -0.33 0.17 16 41 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 42 H 0.08 1.00 5.58 -51.93 -0.29 0.71 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.01 0.26 7.96 -51.93 -0.41 -0.16 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.03 0.80 7.15 -51.93 -0.37 0.43 16 47 H 0.06 1.49 7.13 -51.93 -0.37 1.12 16 48 H 0.07 1.12 5.78 -51.93 -0.30 0.82 16 49 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 50 H 0.06 0.74 7.70 -51.93 -0.40 0.34 16 51 H 0.08 1.16 6.99 -51.93 -0.36 0.80 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -34.21 389.60 -10.63 -44.84 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.06 Total: -0.69 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.95 Total: -3.02 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.55 Total: -55.20 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.21 -10.63 -44.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946779764.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.082 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds