Wall clock time and date at job start Wed Apr 1 2020 01:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38223 * 119.61920 * 2 1 4 4 C 1.38628 * 119.16031 * 180.02562 * 3 2 1 5 5 C 1.38672 * 118.42475 * 359.97438 * 4 3 2 6 6 C 1.50691 * 120.41848 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47423 * 269.98084 * 6 5 4 8 8 O 1.21283 * 119.99943 * 359.97438 * 7 6 5 9 9 N 1.34781 * 120.00223 * 180.02562 * 7 6 5 10 10 C 1.43507 * 122.54130 * 359.71538 * 9 7 6 11 11 C 1.52196 * 113.97112 * 122.91372 * 10 9 7 12 12 C 1.51157 * 111.77259 * 82.85976 * 11 10 9 13 13 H 1.09002 * 110.23174 * 33.56780 * 12 11 10 14 14 C 1.53400 * 110.93800 * 156.63843 * 12 11 10 15 15 N 1.46618 * 108.11021 * 102.74150 * 14 12 11 16 16 C 1.36933 * 125.32374 * 178.63695 * 15 14 12 17 17 H 1.08000 * 119.99987 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99911 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99985 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99780 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47026 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46850 * 120.00798 * 20 18 16 23 23 H 1.48497 * 109.47021 * 240.00616 * 20 18 16 24 24 C 1.46666 * 109.35426 * 358.64294 * 15 14 12 25 25 C 1.54044 * 106.94047 * 18.30245 * 24 15 14 26 26 H 1.09000 * 111.48643 * 91.53381 * 25 24 15 27 27 C 1.51853 * 109.44903 * 214.13290 * 25 24 15 28 28 C 1.49550 * 122.54488 * 179.97438 * 9 7 6 29 29 C 1.38186 * 119.15778 * 0.02562 * 5 4 3 30 30 N 1.31856 * 119.61623 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47134 * 269.97639 * 1 2 3 32 32 H 1.08994 * 109.46892 * 29.98268 * 1 2 3 33 33 H 1.09010 * 109.46893 * 149.97700 * 1 2 3 34 34 H 1.07996 * 120.41822 * 0.03714 * 3 2 1 35 35 H 1.08005 * 120.78857 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.47518 * 29.98776 * 6 5 4 37 37 H 1.09003 * 109.47108 * 149.98144 * 6 5 4 38 38 H 1.09001 * 108.52242 * 244.18500 * 10 9 7 39 39 H 1.08993 * 108.53083 * 1.71546 * 10 9 7 40 40 H 1.09005 * 109.13441 * 322.22391 * 11 10 9 41 41 H 1.08999 * 108.91068 * 203.35054 * 11 10 9 42 42 H 1.08996 * 109.74504 * 222.41829 * 14 12 11 43 43 H 1.09004 * 109.74021 * 343.08961 * 14 12 11 44 44 H 0.97005 * 119.99671 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.96663 * 258.93160 * 24 15 14 46 46 H 1.09000 * 109.96831 * 137.67066 * 24 15 14 47 47 H 1.08998 * 109.00433 * 54.29174 * 27 25 24 48 48 H 1.08993 * 109.00351 * 295.50567 * 27 25 24 49 49 H 1.08994 * 110.27064 * 9.14404 * 28 9 7 50 50 H 1.09002 * 110.26325 * 131.09970 * 28 9 7 51 51 H 1.08001 * 119.60956 * 180.27218 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.2267 -0.0343 -0.0005 6 6 5.7322 -0.0988 -0.0005 7 6 6.2341 -0.1208 -1.4213 8 8 5.4467 -0.0878 -2.3431 9 7 7.5580 -0.1781 -1.6675 10 6 8.5374 -0.2142 -0.6192 11 6 9.4614 -1.4222 -0.6776 12 6 10.6038 -1.2080 -1.6439 13 1 10.9011 -0.1593 -1.6495 14 6 11.7947 -2.1091 -1.2932 15 7 11.8065 -3.2348 -2.2325 16 6 12.7376 -4.2386 -2.2536 17 1 13.5461 -4.2405 -1.5375 18 6 12.6419 -5.2544 -3.1948 19 7 11.6564 -5.2525 -4.0673 20 14 13.9118 -6.6242 -3.2232 21 1 14.9088 -6.3971 -2.1464 22 1 13.2371 -7.9291 -3.0055 23 1 14.5984 -6.6355 -4.5398 24 6 10.6652 -3.1176 -3.1461 25 6 10.1812 -1.6569 -3.0746 26 1 10.6662 -1.0381 -3.8295 27 6 8.6724 -1.6154 -3.2410 28 6 8.1181 -0.2031 -3.0540 29 6 3.4766 -1.1948 -0.0005 30 7 2.1586 -1.1463 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8899 -0.5142 34 1 1.6508 2.1372 0.0006 35 1 4.1367 2.1139 -0.0010 36 1 6.1334 0.7750 0.5131 37 1 6.0572 -1.0033 0.5136 38 1 9.1415 0.6912 -0.6783 39 1 8.0187 -0.2183 0.3394 40 1 8.8891 -2.2948 -0.9925 41 1 9.8675 -1.6046 0.3173 42 1 12.7227 -1.5446 -1.3832 43 1 11.6873 -2.4812 -0.2743 44 1 11.5897 -5.9622 -4.7252 45 1 9.8667 -3.7900 -2.8325 46 1 10.9762 -3.3572 -4.1630 47 1 8.2157 -2.2764 -2.5042 48 1 8.4156 -1.9682 -4.2398 49 1 7.3316 -0.0070 -3.7826 50 1 8.9153 0.5337 -3.1524 51 1 3.9755 -2.1527 0.0040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946894821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:18 Heat of formation + Delta-G solvation = 25.919828 kcal Electronic energy + Delta-G solvation = -30159.886148 eV Core-core repulsion = 26252.619388 eV Total energy + Delta-G solvation = -3907.266760 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.81999 -40.07920 -38.52165 -35.94426 -34.33250 -33.15956 -32.48876 -32.33628 -30.75047 -30.13076 -27.73195 -27.36158 -26.10633 -24.24920 -23.74641 -23.03968 -22.64992 -21.65670 -20.13463 -19.33863 -18.30588 -17.36317 -16.96630 -16.93047 -16.52360 -15.94484 -15.50656 -15.24372 -14.95205 -14.62951 -14.31595 -14.19012 -13.73817 -13.63657 -13.44812 -13.24837 -13.08524 -12.95497 -12.72550 -12.57420 -12.46888 -12.29021 -12.23226 -11.77666 -11.71128 -11.46783 -11.22025 -11.11258 -10.89936 -10.80904 -10.67866 -10.15837 -10.02651 -9.99016 -9.77747 -9.76216 -9.66065 -9.62705 -9.45005 -8.95219 -8.67608 -8.55084 -6.81213 -5.67235 -3.06140 0.87012 1.10634 2.54941 2.92750 3.38985 3.44441 3.47055 3.59694 4.07289 4.40774 4.46696 4.49043 4.57456 4.66224 4.73363 4.80185 5.00946 5.03647 5.05877 5.13253 5.28346 5.29531 5.30888 5.34681 5.35328 5.41424 5.49194 5.55349 5.57915 5.66169 5.74341 5.75546 5.86403 5.89609 5.98991 6.03621 6.06357 6.15690 6.33422 6.36851 6.44040 6.51167 6.57496 6.62992 6.68434 6.78142 7.02597 7.46956 7.56175 7.66137 7.81713 7.87025 8.10729 8.35317 9.23987 9.84984 10.48750 11.38553 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021176 B = 0.002152 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.928072 B =13008.035687 C =13484.415550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.121 4.121 6 C -0.097 4.097 7 C 0.522 3.478 8 O -0.537 6.537 9 N -0.609 5.609 10 C 0.107 3.893 11 C -0.128 4.128 12 C -0.092 4.092 13 H 0.066 0.934 14 C 0.143 3.857 15 N -0.602 5.602 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.170 3.830 25 C -0.109 4.109 26 H 0.067 0.933 27 C -0.125 4.125 28 C 0.115 3.885 29 C 0.121 3.879 30 N -0.484 5.484 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.251 0.749 45 H 0.014 0.986 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.801 16.187 10.114 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.192 4.192 4 C -0.084 4.084 5 C -0.124 4.124 6 C -0.138 4.138 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.342 5.342 10 C -0.017 4.017 11 C -0.166 4.166 12 C -0.111 4.111 13 H 0.084 0.916 14 C 0.017 3.983 15 N -0.328 5.328 16 C -0.353 4.353 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.045 3.955 25 C -0.129 4.129 26 H 0.085 0.915 27 C -0.164 4.164 28 C -0.006 4.006 29 C -0.037 4.037 30 N -0.193 5.193 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.104 0.896 50 H 0.095 0.905 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.689 15.235 9.525 24.522 hybrid contribution 1.431 0.000 0.007 1.431 sum -15.258 15.235 9.532 23.575 Atomic orbital electron populations 1.20703 0.88946 1.03479 1.02928 1.21306 0.97031 0.88469 0.94753 1.21885 0.94696 0.99224 1.03384 1.21400 0.94417 0.97625 0.95006 1.20282 0.95208 0.94618 1.02262 1.20616 0.92138 1.05576 0.95445 1.20320 0.81429 0.76332 0.90969 1.90722 1.54557 1.49765 1.46283 1.48061 1.05001 1.72585 1.08567 1.20906 0.91348 0.99247 0.90208 1.21579 0.96794 0.98187 1.00087 1.21790 0.95202 0.98712 0.95381 0.91599 1.21110 0.94519 0.89191 0.93511 1.44214 1.29141 1.24954 1.34522 1.19106 1.03442 0.99793 1.12934 0.90478 1.24806 0.98553 0.98995 0.98332 1.69908 1.31993 1.34025 1.21013 0.86027 0.80467 0.81874 0.77307 1.20543 1.21782 1.21767 1.21416 0.88540 0.88019 0.97559 1.22446 0.93936 1.01004 0.95471 0.91494 1.21838 0.96135 0.95708 1.02669 1.22284 0.97997 0.98084 0.82265 1.22593 0.89202 0.97909 0.93956 1.67531 1.09740 1.29347 1.12681 0.90504 0.90797 0.90457 0.84909 0.85057 0.87812 0.87430 0.91921 0.90886 0.90441 0.90956 0.96279 0.96196 0.93828 0.96791 0.89330 0.90833 0.91495 0.89577 0.90465 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.17 36.01 0.37 -0.39 16 2 C 0.12 1.29 6.78 -82.59 -0.56 0.73 16 3 C -0.17 -1.58 9.74 -39.44 -0.38 -1.97 16 4 C -0.06 -0.56 9.86 -39.28 -0.39 -0.95 16 5 C -0.12 -1.28 4.39 -104.49 -0.46 -1.74 16 6 C -0.10 -0.87 4.25 -29.04 -0.12 -0.99 16 7 C 0.52 6.57 7.75 -10.99 -0.09 6.48 16 8 O -0.54 -8.91 15.71 5.55 0.09 -8.83 16 9 N -0.61 -7.23 2.61 -174.05 -0.45 -7.69 16 10 C 0.11 1.07 5.70 -6.04 -0.03 1.04 16 11 C -0.13 -1.66 4.78 -28.07 -0.13 -1.80 16 12 C -0.09 -1.43 2.79 -89.85 -0.25 -1.68 16 13 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 14 C 0.14 2.83 6.82 -3.77 -0.03 2.81 16 15 N -0.60 -15.09 3.38 -172.12 -0.58 -15.67 16 16 C -0.22 -6.20 10.25 -15.06 -0.15 -6.36 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 19 N -0.92 -26.87 10.16 55.49 0.56 -26.31 16 20 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.17 4.00 5.13 -3.41 -0.02 3.98 16 25 C -0.11 -1.91 2.94 -89.17 -0.26 -2.17 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 C -0.13 -1.93 4.50 -27.38 -0.12 -2.05 16 28 C 0.11 1.49 6.16 -2.41 -0.01 1.47 16 29 C 0.12 1.42 10.86 -17.55 -0.19 1.23 16 30 N -0.48 -6.12 10.27 -9.47 -0.10 -6.22 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.10 0.66 7.84 -51.93 -0.41 0.25 16 37 H 0.11 0.79 7.80 -51.93 -0.40 0.39 16 38 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 39 H 0.07 0.54 5.98 -51.93 -0.31 0.23 16 40 H 0.08 1.19 5.87 -51.93 -0.30 0.89 16 41 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.39 7.40 -51.93 -0.38 0.01 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.01 0.36 7.72 -51.93 -0.40 -0.04 16 46 H 0.09 2.40 6.19 -51.93 -0.32 2.08 16 47 H 0.07 1.22 5.47 -51.93 -0.28 0.94 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.09 1.19 7.31 -51.93 -0.38 0.81 16 50 H 0.08 0.90 7.82 -51.93 -0.41 0.50 16 51 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -34.05 392.74 -10.66 -44.71 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.14 Total: -0.19 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.94 Total: -2.76 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.57 Total: -55.88 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.05 -10.66 -44.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946894821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.631 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds