Wall clock time and date at job start Wed Apr 1 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38600 * 119.55072 * 2 1 4 4 C 1.38591 * 119.35399 * 179.97438 * 3 2 1 5 5 C 1.38629 * 118.48346 * 359.97438 * 4 3 2 6 6 C 1.39272 * 119.06689 * 0.02562 * 5 4 3 7 7 C 1.48164 * 119.72487 * 179.71594 * 6 5 4 8 8 O 1.21513 * 120.00251 * 7.50909 * 7 6 5 9 9 N 1.34783 * 119.99981 * 187.50389 * 7 6 5 10 10 C 1.46936 * 120.64175 * 8.26173 * 9 7 6 11 11 C 1.53616 * 108.53459 * 126.32812 * 10 9 7 12 12 C 1.53049 * 109.26183 * 54.86950 * 11 10 9 13 13 C 1.53027 * 109.43928 * 58.56944 * 12 11 10 14 14 C 1.53193 * 109.33389 * 181.23134 * 13 12 11 15 15 N 1.46930 * 108.78313 * 305.37772 * 14 13 12 16 16 C 1.36939 * 120.64235 * 233.61830 * 15 14 13 17 17 H 1.08004 * 119.99975 * 22.41513 * 16 15 14 18 18 C 1.38805 * 119.99978 * 202.42206 * 16 15 14 19 19 N 1.31625 * 120.00098 * 24.50299 * 18 16 15 20 20 Si 1.86797 * 120.00103 * 204.50362 * 18 16 15 21 21 H 1.48507 * 109.46951 * 90.00061 * 20 18 16 22 22 H 1.48498 * 109.47619 * 209.99834 * 20 18 16 23 23 H 1.48500 * 109.47120 * 330.00116 * 20 18 16 24 24 C 1.46921 * 118.71622 * 53.63213 * 15 14 13 25 25 C 1.53041 * 109.39352 * 178.59912 * 12 11 10 26 26 C 1.53031 * 109.54354 * 298.55889 * 12 11 10 27 27 C 1.46925 * 120.64153 * 188.54749 * 9 7 6 28 28 N 1.31499 * 119.54623 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46625 * 89.99717 * 1 2 3 30 30 H 1.08995 * 109.47075 * 209.99749 * 1 2 3 31 31 H 1.09001 * 109.46550 * 330.00290 * 1 2 3 32 32 H 1.08001 * 120.32705 * 0.02562 * 3 2 1 33 33 H 1.07990 * 120.75583 * 179.97438 * 4 3 2 34 34 H 1.07997 * 120.46917 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.58568 * 246.15892 * 10 9 7 36 36 H 1.08997 * 109.58674 * 6.59236 * 10 9 7 37 37 H 1.08994 * 109.63574 * 294.86964 * 11 10 9 38 38 H 1.09001 * 109.42757 * 174.73627 * 11 10 9 39 39 H 1.08996 * 109.49706 * 301.19250 * 13 12 11 40 40 H 1.08996 * 109.49373 * 61.27889 * 13 12 11 41 41 H 1.09004 * 109.58246 * 185.58579 * 14 13 12 42 42 H 1.09003 * 109.70285 * 65.23700 * 14 13 12 43 43 H 0.97001 * 120.00071 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.58848 * 186.56874 * 24 15 14 45 45 H 1.09007 * 109.70225 * 66.21685 * 24 15 14 46 46 H 1.08998 * 109.49438 * 298.69090 * 25 12 11 47 47 H 1.09005 * 109.49347 * 58.76983 * 25 12 11 48 48 H 1.08996 * 109.49703 * 301.33609 * 26 12 11 49 49 H 1.09006 * 109.49296 * 181.25852 * 26 12 11 50 50 H 1.08996 * 109.58865 * 353.40567 * 27 9 7 51 51 H 1.09007 * 109.58673 * 113.68775 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 6 4.2334 -0.0198 0.0016 6 6 3.4821 -1.1925 0.0016 7 6 4.1692 -2.5052 -0.0037 8 8 5.3757 -2.5600 0.1296 9 7 3.4559 -3.6386 -0.1562 10 6 2.0278 -3.5844 -0.4977 11 6 1.7915 -4.4463 -1.7472 12 6 2.3233 -5.8589 -1.4940 13 6 1.6141 -6.4599 -0.2785 14 6 2.1700 -7.8617 -0.0087 15 7 2.0492 -8.6625 -1.2346 16 6 1.4182 -9.8777 -1.2152 17 1 0.7057 -10.1038 -0.4356 18 6 1.6943 -10.8189 -2.1973 19 7 2.8442 -10.7849 -2.8368 20 14 0.4338 -12.1338 -2.6115 21 1 -0.4623 -11.6391 -3.6874 22 1 1.1316 -13.3605 -3.0737 23 1 -0.3700 -12.4473 -1.4029 24 6 2.6189 -8.1345 -2.4817 25 6 2.0580 -6.7299 -2.7242 26 6 3.8291 -5.7989 -1.2276 27 6 4.0898 -4.9520 0.0219 28 7 2.1555 -1.1440 0.0005 29 1 -0.3632 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6486 2.1399 0.0004 33 1 4.1319 2.1271 0.0001 34 1 5.3126 -0.0609 0.0016 35 1 1.4384 -3.9715 0.3334 36 1 1.7402 -2.5534 -0.7036 37 1 2.3130 -4.0084 -2.5982 38 1 0.7233 -4.4925 -1.9591 39 1 1.7852 -5.8270 0.5922 40 1 0.5443 -6.5249 -0.4769 41 1 1.6007 -8.3324 0.7929 42 1 3.2187 -7.7918 0.2803 43 1 3.0370 -11.4425 -3.5234 44 1 2.3462 -8.7854 -3.3124 45 1 3.7046 -8.0849 -2.3977 46 1 0.9842 -6.7925 -2.9007 47 1 2.5449 -6.2888 -3.5940 48 1 4.3323 -5.3491 -2.0835 49 1 4.2110 -6.8076 -1.0696 50 1 5.1635 -4.8240 0.1591 51 1 3.6662 -5.4467 0.8961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957501259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:27 Heat of formation + Delta-G solvation = 38.564775 kcal Electronic energy + Delta-G solvation = -31238.267185 eV Core-core repulsion = 27331.548751 eV Total energy + Delta-G solvation = -3906.718434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.20032 -39.90282 -38.48378 -35.93128 -33.73381 -33.36542 -32.80471 -31.27127 -30.63108 -29.94144 -28.23707 -27.85566 -25.44476 -24.60577 -23.26072 -23.14970 -22.29410 -21.85028 -20.74948 -19.66291 -17.97495 -17.34996 -16.89320 -16.47754 -16.25238 -15.72571 -15.57079 -14.85628 -14.64944 -14.47962 -14.19241 -14.12272 -13.96621 -13.59573 -13.50968 -13.43170 -13.20020 -12.85830 -12.78042 -12.66192 -12.53573 -12.31650 -11.90385 -11.49914 -11.35934 -11.29127 -11.19757 -10.92012 -10.68841 -10.50119 -10.36484 -10.34757 -10.25709 -10.11402 -9.93884 -9.76751 -9.43115 -9.36807 -9.34124 -8.90419 -8.38304 -8.35387 -6.67498 -5.75764 -3.08440 0.34447 0.80176 2.57940 2.95516 3.41299 3.49012 3.49772 3.52431 3.72798 4.26358 4.38469 4.54998 4.59351 4.68905 4.89624 5.11804 5.14402 5.19030 5.19804 5.22509 5.24563 5.40099 5.41566 5.50108 5.57551 5.62046 5.67989 5.72236 5.74913 5.85162 5.94825 6.04329 6.09339 6.17324 6.18203 6.20286 6.30922 6.42552 6.47116 6.48669 6.63475 6.68833 6.75327 6.81113 6.93768 6.99597 7.06726 7.33083 7.42864 7.51987 7.70994 7.85195 8.11345 8.46171 9.25045 9.91668 10.46468 11.32807 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.002588 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.037808 B =10817.125177 C =11453.623131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.121 3.879 3 C -0.153 4.153 4 C -0.076 4.076 5 C -0.120 4.120 6 C 0.091 3.909 7 C 0.565 3.435 8 O -0.542 6.542 9 N -0.581 5.581 10 C 0.069 3.931 11 C -0.124 4.124 12 C -0.048 4.048 13 C -0.123 4.123 14 C 0.145 3.855 15 N -0.591 5.591 16 C -0.249 4.249 17 H 0.067 0.933 18 C -0.001 4.001 19 N -0.898 5.898 20 Si 0.895 3.105 21 H -0.289 1.289 22 H -0.293 1.293 23 H -0.280 1.280 24 C 0.168 3.832 25 C -0.129 4.129 26 C -0.122 4.122 27 C 0.108 3.892 28 N -0.447 5.447 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.148 0.852 35 H 0.066 0.934 36 H 0.145 0.855 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.086 0.914 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.058 0.942 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 26.236 4.913 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.018 4.018 3 C -0.173 4.173 4 C -0.102 4.102 5 C -0.141 4.141 6 C -0.046 4.046 7 C 0.351 3.649 8 O -0.419 6.419 9 N -0.311 5.311 10 C -0.053 4.053 11 C -0.162 4.162 12 C -0.048 4.048 13 C -0.163 4.163 14 C 0.019 3.981 15 N -0.314 5.314 16 C -0.378 4.378 17 H 0.085 0.915 18 C -0.199 4.199 19 N -0.543 5.543 20 Si 0.725 3.275 21 H -0.216 1.216 22 H -0.220 1.220 23 H -0.205 1.205 24 C 0.042 3.958 25 C -0.168 4.168 26 C -0.160 4.160 27 C -0.013 4.013 28 N -0.160 5.160 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.107 0.893 50 H 0.105 0.895 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.442 25.248 4.886 25.832 hybrid contribution -0.187 -0.029 -0.375 0.420 sum -2.630 25.219 4.511 25.754 Atomic orbital electron populations 1.20778 0.88114 1.03965 1.03562 1.21563 0.97460 0.88264 0.94528 1.22173 0.95013 0.99404 1.00718 1.21640 0.94448 0.98306 0.95772 1.22102 1.02356 0.91694 0.97902 1.21273 0.89560 0.94425 0.99342 1.17891 0.86156 0.83170 0.77659 1.90765 1.13243 1.86521 1.51406 1.48004 1.11498 1.05297 1.66344 1.23223 0.79414 1.05550 0.97075 1.22127 1.01035 0.95713 0.97363 1.20401 0.94150 0.93468 0.96781 1.22120 0.99824 0.98070 0.96238 1.20911 0.97035 0.90114 0.90068 1.44095 1.66573 1.18012 1.02708 1.19208 1.15970 0.90951 1.11712 0.91536 1.24841 0.96212 0.97328 1.01525 1.70125 1.19788 1.36912 1.27486 0.86389 0.81566 0.81044 0.78488 1.21597 1.21959 1.20534 1.20814 0.94422 0.90049 0.90507 1.22204 1.00850 0.98606 0.95129 1.22008 0.96664 1.00669 0.96675 1.21797 0.98956 0.81711 0.98855 1.67500 1.08462 1.27865 1.12169 0.89978 0.89958 0.90454 0.84307 0.84013 0.83409 0.91596 0.83873 0.92531 0.91232 0.93022 0.92420 0.93244 0.96401 0.93753 0.89578 0.96349 0.92728 0.93618 0.92362 0.89260 0.89544 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.17 36.01 0.37 -0.21 16 2 C 0.12 0.99 6.78 -82.60 -0.56 0.43 16 3 C -0.15 -0.99 9.75 -39.32 -0.38 -1.37 16 4 C -0.08 -0.53 10.17 -39.31 -0.40 -0.93 16 5 C -0.12 -1.18 9.63 -39.05 -0.38 -1.56 16 6 C 0.09 1.12 6.61 -83.01 -0.55 0.57 16 7 C 0.57 8.43 7.66 -12.18 -0.09 8.34 16 8 O -0.54 -9.40 15.78 5.35 0.08 -9.31 16 9 N -0.58 -8.41 2.97 -173.50 -0.51 -8.92 16 10 C 0.07 0.90 5.46 -3.48 -0.02 0.88 16 11 C -0.12 -1.73 4.92 -26.39 -0.13 -1.86 16 12 C -0.05 -0.78 0.51 -154.43 -0.08 -0.86 16 13 C -0.12 -2.11 4.15 -26.62 -0.11 -2.22 16 14 C 0.15 3.00 6.04 -3.71 -0.02 2.98 16 15 N -0.59 -14.67 3.01 -172.32 -0.52 -15.19 16 16 C -0.25 -6.86 9.60 -15.06 -0.14 -7.00 16 17 H 0.07 1.81 7.91 -52.48 -0.41 1.40 16 18 C 0.00 -0.02 4.77 -17.43 -0.08 -0.11 16 19 N -0.90 -26.27 11.28 55.49 0.63 -25.65 16 20 Si 0.89 21.86 29.62 -169.99 -5.03 16.83 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.17 3.97 4.94 -3.72 -0.02 3.96 16 25 C -0.13 -2.46 4.90 -26.61 -0.13 -2.59 16 26 C -0.12 -2.01 4.15 -26.62 -0.11 -2.12 16 27 C 0.11 1.65 5.97 -3.71 -0.02 1.62 16 28 N -0.45 -4.85 5.99 -6.06 -0.04 -4.89 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.15 1.42 7.66 -52.49 -0.40 1.01 16 35 H 0.07 0.85 6.66 -51.93 -0.35 0.51 16 36 H 0.15 1.74 3.97 -87.07 -0.35 1.40 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.79 4.98 -51.93 -0.26 0.53 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.02 7.91 -51.93 -0.41 0.61 16 42 H 0.02 0.38 6.74 -51.93 -0.35 0.03 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.09 2.32 5.86 -51.93 -0.30 2.01 16 45 H 0.02 0.46 6.67 -51.92 -0.35 0.11 16 46 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.09 1.66 4.99 -51.93 -0.26 1.40 16 50 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 51 H 0.07 1.08 6.74 -51.92 -0.35 0.73 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -32.09 380.84 -10.45 -42.55 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.93 Total: 0.91 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.86 Total: -2.06 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.44 Total: -54.65 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.09 -10.45 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957501259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.111 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds