Wall clock time and date at job start Wed Apr 1 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38600 * 119.55072 * 2 1 4 4 C 1.38591 * 119.35399 * 179.97438 * 3 2 1 5 5 C 1.38629 * 118.48346 * 359.97438 * 4 3 2 6 6 C 1.39272 * 119.06689 * 0.02562 * 5 4 3 7 7 C 1.48164 * 119.72487 * 179.71594 * 6 5 4 8 8 O 1.21513 * 120.00251 * 7.50909 * 7 6 5 9 9 N 1.34783 * 119.99981 * 187.50389 * 7 6 5 10 10 C 1.46936 * 120.64175 * 8.26173 * 9 7 6 11 11 C 1.53616 * 108.53459 * 126.32812 * 10 9 7 12 12 C 1.53049 * 109.26183 * 54.86950 * 11 10 9 13 13 C 1.53027 * 109.43928 * 58.56944 * 12 11 10 14 14 C 1.53193 * 109.33389 * 181.23134 * 13 12 11 15 15 N 1.46930 * 108.78313 * 305.37772 * 14 13 12 16 16 C 1.36939 * 120.64235 * 233.61830 * 15 14 13 17 17 H 1.08004 * 119.99975 * 22.41513 * 16 15 14 18 18 C 1.38805 * 119.99978 * 202.42206 * 16 15 14 19 19 N 1.31625 * 120.00098 * 24.50299 * 18 16 15 20 20 Si 1.86797 * 120.00103 * 204.50362 * 18 16 15 21 21 H 1.48507 * 109.46951 * 90.00061 * 20 18 16 22 22 H 1.48498 * 109.47619 * 209.99834 * 20 18 16 23 23 H 1.48500 * 109.47120 * 330.00116 * 20 18 16 24 24 C 1.46921 * 118.71622 * 53.63213 * 15 14 13 25 25 C 1.53041 * 109.39352 * 178.59912 * 12 11 10 26 26 C 1.53031 * 109.54354 * 298.55889 * 12 11 10 27 27 C 1.46925 * 120.64153 * 188.54749 * 9 7 6 28 28 N 1.31499 * 119.54623 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46625 * 89.99717 * 1 2 3 30 30 H 1.08995 * 109.47075 * 209.99749 * 1 2 3 31 31 H 1.09001 * 109.46550 * 330.00290 * 1 2 3 32 32 H 1.08001 * 120.32705 * 0.02562 * 3 2 1 33 33 H 1.07990 * 120.75583 * 179.97438 * 4 3 2 34 34 H 1.07997 * 120.46917 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.58568 * 246.15892 * 10 9 7 36 36 H 1.08997 * 109.58674 * 6.59236 * 10 9 7 37 37 H 1.08994 * 109.63574 * 294.86964 * 11 10 9 38 38 H 1.09001 * 109.42757 * 174.73627 * 11 10 9 39 39 H 1.08996 * 109.49706 * 301.19250 * 13 12 11 40 40 H 1.08996 * 109.49373 * 61.27889 * 13 12 11 41 41 H 1.09004 * 109.58246 * 185.58579 * 14 13 12 42 42 H 1.09003 * 109.70285 * 65.23700 * 14 13 12 43 43 H 0.97001 * 120.00071 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.58848 * 186.56874 * 24 15 14 45 45 H 1.09007 * 109.70225 * 66.21685 * 24 15 14 46 46 H 1.08998 * 109.49438 * 298.69090 * 25 12 11 47 47 H 1.09005 * 109.49347 * 58.76983 * 25 12 11 48 48 H 1.08996 * 109.49703 * 301.33609 * 26 12 11 49 49 H 1.09006 * 109.49296 * 181.25852 * 26 12 11 50 50 H 1.08996 * 109.58865 * 353.40567 * 27 9 7 51 51 H 1.09007 * 109.58673 * 113.68775 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5765 1.2009 0.0005 5 6 4.2334 -0.0198 0.0016 6 6 3.4821 -1.1925 0.0016 7 6 4.1692 -2.5052 -0.0037 8 8 5.3757 -2.5600 0.1296 9 7 3.4559 -3.6386 -0.1562 10 6 2.0278 -3.5844 -0.4977 11 6 1.7915 -4.4463 -1.7472 12 6 2.3233 -5.8589 -1.4940 13 6 1.6141 -6.4599 -0.2785 14 6 2.1700 -7.8617 -0.0087 15 7 2.0492 -8.6625 -1.2346 16 6 1.4182 -9.8777 -1.2152 17 1 0.7057 -10.1038 -0.4356 18 6 1.6943 -10.8189 -2.1973 19 7 2.8442 -10.7849 -2.8368 20 14 0.4338 -12.1338 -2.6115 21 1 -0.4623 -11.6391 -3.6874 22 1 1.1316 -13.3605 -3.0737 23 1 -0.3700 -12.4473 -1.4029 24 6 2.6189 -8.1345 -2.4817 25 6 2.0580 -6.7299 -2.7242 26 6 3.8291 -5.7989 -1.2276 27 6 4.0898 -4.9520 0.0219 28 7 2.1555 -1.1440 0.0005 29 1 -0.3632 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6486 2.1399 0.0004 33 1 4.1319 2.1271 0.0001 34 1 5.3126 -0.0609 0.0016 35 1 1.4384 -3.9715 0.3334 36 1 1.7402 -2.5534 -0.7036 37 1 2.3130 -4.0084 -2.5982 38 1 0.7233 -4.4925 -1.9591 39 1 1.7852 -5.8270 0.5922 40 1 0.5443 -6.5249 -0.4769 41 1 1.6007 -8.3324 0.7929 42 1 3.2187 -7.7918 0.2803 43 1 3.0370 -11.4425 -3.5234 44 1 2.3462 -8.7854 -3.3124 45 1 3.7046 -8.0849 -2.3977 46 1 0.9842 -6.7925 -2.9007 47 1 2.5449 -6.2888 -3.5940 48 1 4.3323 -5.3491 -2.0835 49 1 4.2110 -6.8076 -1.0696 50 1 5.1635 -4.8240 0.1591 51 1 3.6662 -5.4467 0.8961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957501259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:26 Heat of formation + Delta-G solvation = 20.699893 kcal Electronic energy + Delta-G solvation = -31239.041864 eV Core-core repulsion = 27331.548751 eV Total energy + Delta-G solvation = -3907.493114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.12213 -41.00030 -39.70988 -37.44440 -35.23497 -33.97423 -33.69584 -33.02365 -31.86845 -31.61207 -29.57976 -28.62446 -26.85099 -25.90169 -24.65495 -24.26682 -23.45072 -23.04057 -22.18308 -20.89743 -19.36353 -18.74428 -18.01939 -17.65302 -17.02681 -16.83061 -16.70373 -16.57283 -15.80831 -15.69530 -15.42476 -15.28465 -15.16450 -15.04131 -14.81033 -14.57044 -14.54278 -14.24111 -14.06972 -13.26128 -13.21617 -13.12755 -13.05497 -13.04827 -12.95010 -12.77978 -12.65808 -12.53735 -12.24754 -12.13706 -12.05286 -11.77736 -11.68599 -11.41848 -11.28021 -11.09161 -10.94895 -10.89731 -10.43751 -10.02423 -9.82679 -9.56453 -8.70578 -7.87410 -5.22929 -0.37258 0.21371 1.45848 1.48086 1.56484 1.65324 1.90622 2.52674 2.77454 2.96314 3.24366 3.55923 3.70915 3.80830 3.84310 3.88075 3.90885 4.02650 4.09390 4.17702 4.23301 4.36367 4.44181 4.50274 4.57381 4.61769 4.63830 4.75052 4.77557 4.81341 4.82434 4.82807 4.89651 4.97330 5.03495 5.09775 5.11445 5.15875 5.17397 5.21129 5.27474 5.32409 5.37942 5.43163 5.46611 5.57747 5.60997 5.67996 5.80820 5.86254 6.34743 6.37217 6.69624 7.04265 7.15092 7.90032 8.39989 9.19014 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023925 B = 0.002588 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.037808 B =10817.125177 C =11453.623131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.111 3.889 3 C -0.137 4.137 4 C -0.070 4.070 5 C -0.129 4.129 6 C 0.061 3.939 7 C 0.560 3.440 8 O -0.578 6.578 9 N -0.584 5.584 10 C 0.074 3.926 11 C -0.115 4.115 12 C -0.043 4.043 13 C -0.108 4.108 14 C 0.141 3.859 15 N -0.607 5.607 16 C -0.258 4.258 17 H 0.068 0.932 18 C -0.054 4.054 19 N -0.932 5.932 20 Si 0.960 3.040 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.269 1.269 24 C 0.176 3.824 25 C -0.117 4.117 26 C -0.113 4.113 27 C 0.115 3.885 28 N -0.464 5.464 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.141 0.859 35 H 0.071 0.929 36 H 0.161 0.839 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.015 0.985 43 H 0.248 0.752 44 H 0.050 0.950 45 H -0.003 1.003 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 29.852 5.549 30.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.095 4.095 5 C -0.150 4.150 6 C -0.075 4.075 7 C 0.348 3.652 8 O -0.459 6.459 9 N -0.314 5.314 10 C -0.047 4.047 11 C -0.153 4.153 12 C -0.043 4.043 13 C -0.147 4.147 14 C 0.016 3.984 15 N -0.331 5.331 16 C -0.388 4.388 17 H 0.085 0.915 18 C -0.249 4.249 19 N -0.579 5.579 20 Si 0.789 3.211 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.193 1.193 24 C 0.051 3.949 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.007 4.007 28 N -0.178 5.178 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.196 0.804 33 H 0.194 0.806 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.032 0.968 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.015 0.985 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.947 28.886 5.542 29.826 hybrid contribution 0.601 -1.052 -0.521 1.319 sum -4.346 27.833 5.022 28.615 Atomic orbital electron populations 1.20880 0.86064 1.04891 1.04417 1.22134 0.98798 0.88151 0.93767 1.22642 0.94872 1.00330 0.97802 1.22040 0.95045 0.98235 0.94197 1.22200 1.02202 0.92385 0.98246 1.20891 0.90463 0.93329 1.02785 1.18421 0.85918 0.84285 0.76585 1.90728 1.14851 1.87244 1.53033 1.48078 1.12086 1.04811 1.66411 1.23353 0.78430 1.06369 0.96520 1.22047 1.01766 0.93520 0.97971 1.20351 0.94003 0.94740 0.95205 1.21955 0.99470 0.95879 0.97398 1.21069 0.97093 0.91705 0.88574 1.44349 1.66519 1.17893 1.04311 1.19533 1.15802 0.91889 1.11617 0.91462 1.25592 0.97720 0.99771 1.01814 1.70269 1.21508 1.37963 1.28173 0.85362 0.79152 0.78230 0.78369 1.21346 1.22461 1.19335 1.20598 0.93286 0.91950 0.89112 1.22026 1.00345 0.96185 0.97017 1.21853 0.96708 0.99327 0.97222 1.21610 0.98630 0.82332 0.98135 1.67233 1.07745 1.29666 1.13138 0.89032 0.90735 0.87897 0.80381 0.80633 0.84127 0.91103 0.82378 0.92630 0.89639 0.90618 0.92308 0.93351 0.96756 0.94258 0.93204 0.98532 0.92858 0.92487 0.92903 0.91967 0.90636 0.90375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.17 71.24 0.72 0.01 16 2 C 0.11 1.42 6.78 42.70 0.29 1.71 16 3 C -0.14 -1.14 9.75 22.44 0.22 -0.92 16 4 C -0.07 -0.72 10.17 22.45 0.23 -0.49 16 5 C -0.13 -2.39 9.63 22.61 0.22 -2.17 16 6 C 0.06 1.43 6.61 41.89 0.28 1.71 16 7 C 0.56 16.83 7.66 86.88 0.67 17.49 16 8 O -0.58 -20.77 15.78 -3.76 -0.06 -20.83 16 9 N -0.58 -16.67 2.97 -821.11 -2.44 -19.11 16 10 C 0.07 1.80 5.46 86.50 0.47 2.27 16 11 C -0.11 -2.99 4.92 30.82 0.15 -2.84 16 12 C -0.04 -1.38 0.51 -52.13 -0.03 -1.40 16 13 C -0.11 -3.57 4.15 30.67 0.13 -3.45 16 14 C 0.14 5.87 6.04 86.36 0.52 6.39 16 15 N -0.61 -30.90 3.01 -699.09 -2.11 -33.01 16 16 C -0.26 -14.48 9.60 84.03 0.81 -13.68 16 17 H 0.07 3.69 7.91 -2.91 -0.02 3.66 16 18 C -0.05 -3.07 4.77 84.86 0.40 -2.67 16 19 N -0.93 -56.61 11.28 21.65 0.24 -56.36 16 20 Si 0.96 45.79 29.62 68.60 2.03 47.82 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.18 8.69 4.94 86.36 0.43 9.11 16 25 C -0.12 -4.48 4.90 30.67 0.15 -4.33 16 26 C -0.11 -3.81 4.15 30.67 0.13 -3.68 16 27 C 0.12 3.55 5.97 86.36 0.52 4.06 16 28 N -0.46 -9.11 5.99 -173.08 -1.04 -10.14 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.18 8.08 -2.39 -0.02 0.16 16 32 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 33 H 0.18 0.57 8.06 -2.92 -0.02 0.55 16 34 H 0.14 2.69 7.66 -2.91 -0.02 2.67 16 35 H 0.07 1.65 6.66 -2.39 -0.02 1.64 16 36 H 0.16 3.51 3.97 -71.78 -0.28 3.22 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.17 4.98 -2.39 -0.01 2.15 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.99 7.91 -2.38 -0.02 1.98 16 42 H 0.01 0.62 6.74 -2.39 -0.02 0.60 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.05 2.81 5.86 -2.39 -0.01 2.80 16 45 H 0.00 -0.17 6.67 -2.38 -0.02 -0.19 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.06 2.44 4.99 -2.38 -0.01 2.43 16 50 H 0.08 2.49 7.00 -2.39 -0.02 2.48 16 51 H 0.08 2.30 6.74 -2.38 -0.02 2.28 16 Total: -1.00 -73.24 380.84 3.60 -69.64 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.66 Total: 14.86 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.30 Total: 7.14 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -5.33 Total: -118.62 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.06 Total: -20.83 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.24 3.60 -69.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957501259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.342 kcal (2) G-P(sol) polarization free energy of solvation -73.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds