Wall clock time and date at job start Wed Apr 1 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38345 * 120.35130 * 2 1 4 4 N 1.31924 * 121.08065 * 180.02562 * 3 2 1 5 5 C 1.31690 * 121.87921 * 0.02562 * 4 3 2 6 6 C 1.39518 * 120.57005 * 0.02562 * 5 4 3 7 7 C 1.47836 * 120.56550 * 179.97438 * 6 5 4 8 8 O 1.21554 * 120.00562 * 144.10251 * 7 6 5 9 9 N 1.34781 * 119.99824 * 324.10727 * 7 6 5 10 10 C 1.46925 * 120.62691 * 353.85363 * 9 7 6 11 11 C 1.53196 * 108.77719 * 233.88752 * 10 9 7 12 12 C 1.53044 * 109.31043 * 305.36876 * 11 10 9 13 13 C 1.53038 * 109.54047 * 61.36403 * 12 11 10 14 14 H 1.09002 * 109.52085 * 58.59907 * 13 12 11 15 15 C 1.52999 * 109.49758 * 178.68235 * 13 12 11 16 16 H 1.08997 * 110.64167 * 62.98056 * 15 13 12 17 17 C 1.55151 * 110.71989 * 299.83788 * 15 13 12 18 18 C 1.54911 * 101.58154 * 206.13625 * 17 15 13 19 19 N 1.47424 * 104.83286 * 37.01048 * 18 17 15 20 20 C 1.36933 * 125.65160 * 155.90448 * 19 18 17 21 21 H 1.07993 * 120.00597 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99768 * 359.97438 * 20 19 18 23 23 N 1.31626 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00114 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47400 * 89.99444 * 24 22 20 26 26 H 1.48508 * 109.46950 * 209.99887 * 24 22 20 27 27 H 1.48503 * 109.46677 * 329.99354 * 24 22 20 28 28 C 1.47025 * 108.70159 * 335.87054 * 19 18 17 29 29 C 1.46921 * 120.62980 * 174.14184 * 9 7 6 30 30 C 1.38359 * 120.34230 * 180.30682 * 2 1 3 31 31 H 1.09004 * 109.46871 * 89.99462 * 1 2 3 32 32 H 1.08997 * 109.47354 * 209.99998 * 1 2 3 33 33 H 1.09006 * 109.46566 * 329.99893 * 1 2 3 34 34 H 1.08006 * 119.46284 * 0.02562 * 3 2 1 35 35 H 1.08008 * 119.71699 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.59162 * 353.67728 * 10 9 7 37 37 H 1.09001 * 109.58586 * 114.10471 * 10 9 7 38 38 H 1.09002 * 109.49883 * 185.41854 * 11 10 9 39 39 H 1.08997 * 109.52260 * 65.33359 * 11 10 9 40 40 H 1.08997 * 109.45681 * 301.34253 * 12 11 10 41 41 H 1.09003 * 109.44716 * 181.38065 * 12 11 10 42 42 H 1.09003 * 111.00823 * 324.21360 * 17 15 13 43 43 H 1.08997 * 111.00544 * 88.02508 * 17 15 13 44 44 H 1.09001 * 110.36537 * 155.84889 * 18 17 15 45 45 H 1.09004 * 110.36635 * 278.16873 * 18 17 15 46 46 H 0.96998 * 119.99693 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.88197 * 241.63861 * 28 19 18 48 48 H 1.09010 * 109.87799 * 120.47295 * 28 19 18 49 49 H 1.09001 * 109.58502 * 245.89808 * 29 9 7 50 50 H 1.08995 * 109.59236 * 6.32362 * 29 9 7 51 51 H 1.07994 * 120.86001 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1938 0.0000 4 7 3.5252 1.2106 -0.0005 5 6 4.2349 0.1013 -0.0015 6 6 3.6054 -1.1438 -0.0027 7 6 4.4022 -2.3890 -0.0044 8 8 4.0118 -3.3613 0.6119 9 7 5.5616 -2.4462 -0.6892 10 6 5.9806 -1.3288 -1.5463 11 6 6.2715 -1.8669 -2.9509 12 6 7.2920 -3.0034 -2.8561 13 6 6.7134 -4.1420 -2.0130 14 1 5.7872 -4.4961 -2.4657 15 6 7.7213 -5.2912 -1.9462 16 1 8.6359 -4.9715 -1.4469 17 6 8.0317 -5.8323 -3.3668 18 6 8.4479 -7.2924 -3.0592 19 7 7.5632 -7.7130 -1.9575 20 6 7.2237 -9.0047 -1.6553 21 1 6.5658 -9.2097 -0.8239 22 6 7.7251 -10.0507 -2.4179 23 7 8.5266 -9.8008 -3.4316 24 14 7.2625 -11.8128 -2.0053 25 1 6.0330 -12.1888 -2.7484 26 1 8.3725 -12.7198 -2.3934 27 1 7.0143 -11.9306 -0.5459 28 6 7.1066 -6.5159 -1.2364 29 6 6.4274 -3.6297 -0.5978 30 6 2.2060 -1.1941 -0.0064 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5139 34 1 1.6630 2.1274 0.0004 35 1 5.3136 0.1558 -0.0023 36 1 5.1827 -0.5879 -1.5969 37 1 6.8812 -0.8717 -1.1364 38 1 6.6751 -1.0663 -3.5708 39 1 5.3497 -2.2418 -3.3955 40 1 8.2050 -2.6337 -2.3894 41 1 7.5192 -3.3716 -3.8566 42 1 7.1438 -5.8039 -3.9984 43 1 8.8521 -5.2798 -3.8247 44 1 8.2911 -7.9238 -3.9338 45 1 9.4908 -7.3313 -2.7444 46 1 8.8766 -10.5317 -3.9647 47 1 7.4468 -6.5542 -0.2016 48 1 6.0186 -6.4560 -1.2692 49 1 7.3644 -3.3602 -0.1105 50 1 5.9244 -4.4070 -0.0226 51 1 1.6858 -2.1404 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961131013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:58 Heat of formation + Delta-G solvation = 24.156327 kcal Electronic energy + Delta-G solvation = -30235.191514 eV Core-core repulsion = 26327.848282 eV Total energy + Delta-G solvation = -3907.343231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24225 -39.79498 -38.24029 -36.73446 -34.29982 -33.71375 -32.51204 -32.22600 -31.01200 -29.05390 -27.86358 -27.04542 -26.20353 -24.65159 -24.08815 -23.03567 -22.64679 -21.00983 -19.95260 -19.44260 -19.34157 -17.72983 -17.36962 -16.82060 -16.73385 -16.06562 -15.54053 -14.87159 -14.66910 -14.63241 -14.40243 -14.21583 -13.94156 -13.80426 -13.54602 -13.50120 -13.26233 -13.10509 -13.03017 -12.96488 -12.49385 -12.33220 -12.12053 -11.78079 -11.55540 -11.22487 -11.07696 -10.98925 -10.83340 -10.75525 -10.67044 -10.46473 -10.17103 -10.06988 -10.00062 -9.78642 -9.72728 -9.68147 -9.42795 -9.28996 -8.73988 -8.59352 -6.76231 -5.59894 -3.00815 0.33272 0.77341 2.49921 2.74092 3.36549 3.43536 3.48379 3.50558 3.88423 4.15020 4.32783 4.41556 4.51294 4.52013 4.58088 4.66002 4.76785 4.81765 4.95229 5.05188 5.12413 5.13192 5.22776 5.24301 5.40545 5.49992 5.50682 5.53820 5.60560 5.62466 5.68107 5.70198 5.75116 5.81020 5.90836 5.96447 6.03894 6.08391 6.15067 6.28136 6.30397 6.44231 6.49178 6.65855 6.68868 6.83737 7.04632 7.17843 7.43191 7.57767 7.69595 7.91285 7.93399 8.42535 9.28554 9.89597 10.55056 11.44070 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.002344 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.832151 B =11939.981899 C =12999.663436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.142 4.142 3 C 0.115 3.885 4 N -0.483 5.483 5 C 0.120 3.880 6 C -0.173 4.173 7 C 0.561 3.439 8 O -0.527 6.527 9 N -0.603 5.603 10 C 0.093 3.907 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.087 4.087 14 H 0.075 0.925 15 C -0.092 4.092 16 H 0.071 0.929 17 C -0.135 4.135 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.913 3.087 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.140 3.860 29 C 0.115 3.885 30 C -0.024 4.024 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.251 0.749 47 H 0.019 0.981 48 H 0.023 0.977 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.064 25.934 2.725 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.144 4.144 3 C -0.042 4.042 4 N -0.191 5.191 5 C -0.038 4.038 6 C -0.179 4.179 7 C 0.348 3.652 8 O -0.404 6.404 9 N -0.335 5.335 10 C -0.029 4.029 11 C -0.173 4.173 12 C -0.152 4.152 13 C -0.106 4.106 14 H 0.093 0.907 15 C -0.112 4.112 16 H 0.089 0.911 17 C -0.174 4.174 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.094 0.906 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.744 3.256 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.014 3.986 29 C -0.006 4.006 30 C -0.051 4.051 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.037 0.963 48 H 0.041 0.959 49 H 0.089 0.911 50 H 0.116 0.884 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.780 25.988 3.011 27.931 hybrid contribution -0.514 -1.697 0.200 1.785 sum -10.295 24.291 3.212 26.577 Atomic orbital electron populations 1.20752 0.89531 1.03554 1.02973 1.20936 0.98072 0.93692 1.01732 1.22892 0.89941 0.97676 0.93710 1.67738 1.08070 1.30749 1.12502 1.23205 1.00673 0.86599 0.93292 1.21006 0.95164 0.95130 1.06553 1.18103 0.80529 0.87022 0.79530 1.90827 1.69272 1.36493 1.43798 1.48029 1.20910 1.19144 1.45414 1.22219 1.00778 0.88935 0.91004 1.21936 1.00493 0.99087 0.95760 1.21594 0.97792 0.94748 1.01078 1.21513 0.99528 0.95055 0.94534 0.90677 1.22139 0.97110 0.93663 0.98246 0.91103 1.23021 1.00007 0.99659 0.94730 1.21922 0.91669 0.89658 0.94127 1.44516 1.54810 1.00829 1.32937 1.19101 1.23333 0.81277 1.10996 0.90563 1.24781 0.99826 0.98023 0.98265 1.69810 1.36926 1.29727 1.20849 0.86080 0.77407 0.84396 0.77699 1.21652 1.21696 1.20752 1.21344 0.96319 0.86586 0.94361 1.21842 0.93623 0.87031 0.98105 1.21612 0.92278 0.99070 0.92102 0.90553 0.90914 0.90861 0.82302 0.81725 0.89327 0.90715 0.90616 0.91502 0.91755 0.90931 0.92333 0.92568 0.87763 0.97221 0.93854 0.96339 0.95892 0.91138 0.88373 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.03 36.01 0.36 -0.16 16 2 C -0.14 -1.07 5.89 -104.54 -0.62 -1.69 16 3 C 0.11 0.87 10.85 -17.47 -0.19 0.68 16 4 N -0.48 -4.54 10.35 -12.91 -0.13 -4.67 16 5 C 0.12 1.11 8.55 -17.14 -0.15 0.97 16 6 C -0.17 -1.87 5.27 -104.82 -0.55 -2.42 16 7 C 0.56 7.49 7.39 -12.33 -0.09 7.40 16 8 O -0.53 -9.12 16.31 5.32 0.09 -9.03 16 9 N -0.60 -7.02 2.97 -173.88 -0.52 -7.54 16 10 C 0.09 0.79 4.80 -3.71 -0.02 0.77 16 11 C -0.13 -1.18 6.08 -26.61 -0.16 -1.34 16 12 C -0.11 -1.23 4.97 -26.69 -0.13 -1.36 16 13 C -0.09 -1.19 1.74 -90.50 -0.16 -1.34 16 14 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 15 C -0.09 -1.56 2.49 -88.79 -0.22 -1.78 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 17 C -0.14 -2.52 5.38 -24.58 -0.13 -2.65 16 18 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 19 N -0.61 -15.99 3.39 -170.07 -0.58 -16.56 16 20 C -0.22 -6.30 10.27 -15.06 -0.15 -6.46 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 23 N -0.92 -27.48 10.09 55.49 0.56 -26.92 16 24 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.14 3.01 6.10 -3.06 -0.02 2.99 16 29 C 0.12 1.52 5.48 -3.71 -0.02 1.50 16 30 C -0.02 -0.24 9.45 -38.87 -0.37 -0.60 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 33 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.16 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.17 1.24 6.14 -52.48 -0.32 0.91 16 36 H 0.09 0.68 4.51 -51.93 -0.23 0.44 16 37 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.81 7.20 -51.93 -0.37 0.44 16 42 H 0.06 1.09 8.05 -51.93 -0.42 0.68 16 43 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 44 H 0.10 2.89 5.87 -51.93 -0.30 2.59 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.51 7.77 -51.92 -0.40 0.11 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.10 1.56 6.54 -51.93 -0.34 1.22 16 51 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -34.06 393.99 -10.66 -44.73 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.27 Total: -1.28 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.73 Total: -2.29 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.67 Total: -55.69 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.06 -10.66 -44.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961131013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.882 kcal (2) G-P(sol) polarization free energy of solvation -34.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds