Wall clock time and date at job start Wed Apr 1 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38345 * 120.35130 * 2 1 4 4 N 1.31924 * 121.08065 * 180.02562 * 3 2 1 5 5 C 1.31690 * 121.87921 * 0.02562 * 4 3 2 6 6 C 1.39518 * 120.57005 * 0.02562 * 5 4 3 7 7 C 1.47836 * 120.56550 * 179.97438 * 6 5 4 8 8 O 1.21554 * 120.00562 * 144.10251 * 7 6 5 9 9 N 1.34781 * 119.99824 * 324.10727 * 7 6 5 10 10 C 1.46925 * 120.62691 * 353.85363 * 9 7 6 11 11 C 1.53196 * 108.77719 * 233.88752 * 10 9 7 12 12 C 1.53044 * 109.31043 * 305.36876 * 11 10 9 13 13 C 1.53038 * 109.54047 * 61.36403 * 12 11 10 14 14 H 1.09002 * 109.52085 * 58.59907 * 13 12 11 15 15 C 1.52999 * 109.49758 * 178.68235 * 13 12 11 16 16 H 1.08997 * 110.64167 * 62.98056 * 15 13 12 17 17 C 1.55151 * 110.71989 * 299.83788 * 15 13 12 18 18 C 1.54911 * 101.58154 * 206.13625 * 17 15 13 19 19 N 1.47424 * 104.83286 * 37.01048 * 18 17 15 20 20 C 1.36933 * 125.65160 * 155.90448 * 19 18 17 21 21 H 1.07993 * 120.00597 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99768 * 359.97438 * 20 19 18 23 23 N 1.31626 * 120.00166 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00114 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47400 * 89.99444 * 24 22 20 26 26 H 1.48508 * 109.46950 * 209.99887 * 24 22 20 27 27 H 1.48503 * 109.46677 * 329.99354 * 24 22 20 28 28 C 1.47025 * 108.70159 * 335.87054 * 19 18 17 29 29 C 1.46921 * 120.62980 * 174.14184 * 9 7 6 30 30 C 1.38359 * 120.34230 * 180.30682 * 2 1 3 31 31 H 1.09004 * 109.46871 * 89.99462 * 1 2 3 32 32 H 1.08997 * 109.47354 * 209.99998 * 1 2 3 33 33 H 1.09006 * 109.46566 * 329.99893 * 1 2 3 34 34 H 1.08006 * 119.46284 * 0.02562 * 3 2 1 35 35 H 1.08008 * 119.71699 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.59162 * 353.67728 * 10 9 7 37 37 H 1.09001 * 109.58586 * 114.10471 * 10 9 7 38 38 H 1.09002 * 109.49883 * 185.41854 * 11 10 9 39 39 H 1.08997 * 109.52260 * 65.33359 * 11 10 9 40 40 H 1.08997 * 109.45681 * 301.34253 * 12 11 10 41 41 H 1.09003 * 109.44716 * 181.38065 * 12 11 10 42 42 H 1.09003 * 111.00823 * 324.21360 * 17 15 13 43 43 H 1.08997 * 111.00544 * 88.02508 * 17 15 13 44 44 H 1.09001 * 110.36537 * 155.84889 * 18 17 15 45 45 H 1.09004 * 110.36635 * 278.16873 * 18 17 15 46 46 H 0.96998 * 119.99693 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.88197 * 241.63861 * 28 19 18 48 48 H 1.09010 * 109.87799 * 120.47295 * 28 19 18 49 49 H 1.09001 * 109.58502 * 245.89808 * 29 9 7 50 50 H 1.08995 * 109.59236 * 6.32362 * 29 9 7 51 51 H 1.07994 * 120.86001 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1938 0.0000 4 7 3.5252 1.2106 -0.0005 5 6 4.2349 0.1013 -0.0015 6 6 3.6054 -1.1438 -0.0027 7 6 4.4022 -2.3890 -0.0044 8 8 4.0118 -3.3613 0.6119 9 7 5.5616 -2.4462 -0.6892 10 6 5.9806 -1.3288 -1.5463 11 6 6.2715 -1.8669 -2.9509 12 6 7.2920 -3.0034 -2.8561 13 6 6.7134 -4.1420 -2.0130 14 1 5.7872 -4.4961 -2.4657 15 6 7.7213 -5.2912 -1.9462 16 1 8.6359 -4.9715 -1.4469 17 6 8.0317 -5.8323 -3.3668 18 6 8.4479 -7.2924 -3.0592 19 7 7.5632 -7.7130 -1.9575 20 6 7.2237 -9.0047 -1.6553 21 1 6.5658 -9.2097 -0.8239 22 6 7.7251 -10.0507 -2.4179 23 7 8.5266 -9.8008 -3.4316 24 14 7.2625 -11.8128 -2.0053 25 1 6.0330 -12.1888 -2.7484 26 1 8.3725 -12.7198 -2.3934 27 1 7.0143 -11.9306 -0.5459 28 6 7.1066 -6.5159 -1.2364 29 6 6.4274 -3.6297 -0.5978 30 6 2.2060 -1.1941 -0.0064 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5139 34 1 1.6630 2.1274 0.0004 35 1 5.3136 0.1558 -0.0023 36 1 5.1827 -0.5879 -1.5969 37 1 6.8812 -0.8717 -1.1364 38 1 6.6751 -1.0663 -3.5708 39 1 5.3497 -2.2418 -3.3955 40 1 8.2050 -2.6337 -2.3894 41 1 7.5192 -3.3716 -3.8566 42 1 7.1438 -5.8039 -3.9984 43 1 8.8521 -5.2798 -3.8247 44 1 8.2911 -7.9238 -3.9338 45 1 9.4908 -7.3313 -2.7444 46 1 8.8766 -10.5317 -3.9647 47 1 7.4468 -6.5542 -0.2016 48 1 6.0186 -6.4560 -1.2692 49 1 7.3644 -3.3602 -0.1105 50 1 5.9244 -4.4070 -0.0226 51 1 1.6858 -2.1404 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961131013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:57 Heat of formation + Delta-G solvation = 3.622597 kcal Electronic energy + Delta-G solvation = -30236.081923 eV Core-core repulsion = 26327.848282 eV Total energy + Delta-G solvation = -3908.233641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.05772 -40.68951 -39.57879 -38.07189 -35.44194 -34.64218 -33.86083 -33.08041 -32.37163 -30.83061 -28.81935 -28.19434 -27.22119 -26.37060 -24.97728 -23.93744 -23.58049 -22.14283 -21.71419 -20.80326 -20.30440 -18.92067 -18.52737 -18.01119 -17.50248 -17.04941 -16.99576 -16.48949 -15.99541 -15.58999 -15.51998 -15.27010 -15.14443 -14.63123 -14.57504 -14.31541 -14.21529 -14.17613 -13.99165 -13.74249 -13.65223 -13.46305 -13.39885 -13.18909 -12.93085 -12.82595 -12.73907 -12.29365 -12.17049 -12.07176 -11.91702 -11.83502 -11.73682 -11.53763 -11.30497 -11.18295 -11.07310 -10.89614 -10.76283 -10.49467 -9.93613 -9.69177 -8.90145 -7.80039 -5.24353 -0.37028 0.10329 1.42508 1.44869 1.53759 1.55921 1.84328 2.46888 2.67390 3.19814 3.28200 3.46662 3.59729 3.68699 3.74497 3.77683 3.80034 3.88072 3.92247 4.05415 4.12411 4.16994 4.24489 4.30070 4.40611 4.49945 4.56440 4.58827 4.68607 4.72791 4.75542 4.80788 4.81596 4.86532 4.89160 4.91928 4.99088 5.09439 5.12976 5.14520 5.18405 5.22747 5.35044 5.38691 5.42723 5.47323 5.53711 5.56840 5.68212 5.81752 6.25103 6.30362 6.77828 6.95903 7.09669 7.77099 8.40877 9.21482 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.002344 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.832151 B =11939.981899 C =12999.663436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.495 5.495 5 C 0.124 3.876 6 C -0.190 4.190 7 C 0.556 3.444 8 O -0.582 6.582 9 N -0.598 5.598 10 C 0.090 3.910 11 C -0.129 4.129 12 C -0.110 4.110 13 C -0.075 4.075 14 H 0.049 0.951 15 C -0.075 4.075 16 H 0.089 0.911 17 C -0.116 4.116 18 C 0.150 3.850 19 N -0.629 5.629 20 C -0.243 4.243 21 H 0.073 0.927 22 C -0.067 4.067 23 N -0.947 5.947 24 Si 0.980 3.020 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.273 1.273 28 C 0.136 3.864 29 C 0.118 3.882 30 C -0.042 4.042 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.193 0.807 35 H 0.183 0.817 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.070 0.930 45 H -0.011 1.011 46 H 0.248 0.752 47 H 0.015 0.985 48 H 0.010 0.990 49 H 0.092 0.908 50 H 0.062 0.938 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 29.475 2.421 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.138 4.138 3 C -0.038 4.038 4 N -0.203 5.203 5 C -0.033 4.033 6 C -0.195 4.195 7 C 0.345 3.655 8 O -0.463 6.463 9 N -0.329 5.329 10 C -0.031 4.031 11 C -0.167 4.167 12 C -0.148 4.148 13 C -0.095 4.095 14 H 0.067 0.933 15 C -0.094 4.094 16 H 0.107 0.893 17 C -0.155 4.155 18 C 0.025 3.975 19 N -0.355 5.355 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.808 3.192 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.198 1.198 28 C 0.011 3.989 29 C -0.004 4.004 30 C -0.068 4.068 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.210 0.790 35 H 0.200 0.800 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.006 0.994 46 H 0.058 0.942 47 H 0.033 0.967 48 H 0.028 0.972 49 H 0.110 0.890 50 H 0.080 0.920 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.907 29.582 2.691 31.312 hybrid contribution -0.533 -2.777 0.312 2.845 sum -10.440 26.804 3.003 28.922 Atomic orbital electron populations 1.20831 0.87465 1.04482 1.03913 1.21204 0.99493 0.92763 1.00381 1.23472 0.89608 0.98870 0.91878 1.67828 1.08979 1.30467 1.13039 1.23385 1.01480 0.85789 0.92648 1.20857 0.95328 0.94487 1.08833 1.18581 0.80790 0.87299 0.78813 1.90791 1.70647 1.38602 1.46285 1.48106 1.20127 1.19386 1.45251 1.22527 1.02374 0.87918 0.90330 1.21922 0.99375 0.99179 0.96244 1.21584 0.98950 0.93932 1.00308 1.21348 0.97554 0.95113 0.95436 0.93273 1.22046 0.98326 0.92662 0.96356 0.89257 1.22841 1.00960 0.95832 0.95859 1.21769 0.90456 0.92986 0.92269 1.44861 1.55097 1.01408 1.34120 1.19426 1.23579 0.83029 1.11165 0.90952 1.25636 1.00009 1.01993 0.98292 1.70063 1.37614 1.30518 1.21487 0.85053 0.77018 0.79302 0.77807 1.21124 1.21477 1.19841 1.21506 0.95760 0.87263 0.94420 1.21673 0.94272 0.87111 0.97351 1.21730 0.92312 0.99798 0.92976 0.89480 0.91236 0.88720 0.79038 0.80015 0.88245 0.87758 0.87459 0.93018 0.89650 0.90948 0.92564 0.89054 0.91229 0.99352 0.94236 0.96741 0.97220 0.89037 0.91961 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.03 71.24 0.71 -0.09 16 2 C -0.14 -1.82 5.89 -19.81 -0.12 -1.94 16 3 C 0.12 1.46 10.85 84.70 0.92 2.37 16 4 N -0.50 -7.99 10.35 -194.76 -2.01 -10.00 16 5 C 0.12 2.06 8.55 85.02 0.73 2.78 16 6 C -0.19 -4.03 5.27 -19.99 -0.11 -4.13 16 7 C 0.56 15.25 7.39 86.78 0.64 15.89 16 8 O -0.58 -21.60 16.31 -3.88 -0.06 -21.66 16 9 N -0.60 -13.47 2.97 -822.32 -2.44 -15.92 16 10 C 0.09 1.23 4.80 86.36 0.41 1.65 16 11 C -0.13 -1.83 6.08 30.67 0.19 -1.65 16 12 C -0.11 -2.00 4.97 30.62 0.15 -1.85 16 13 C -0.07 -1.98 1.74 -10.72 -0.02 -2.00 16 14 H 0.05 1.57 8.06 -2.39 -0.02 1.55 16 15 C -0.07 -2.47 2.49 -9.61 -0.02 -2.50 16 16 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 17 C -0.12 -4.26 5.38 31.98 0.17 -4.08 16 18 C 0.15 7.63 5.89 86.86 0.51 8.14 16 19 N -0.63 -34.56 3.39 -691.98 -2.35 -36.91 16 20 C -0.24 -14.55 10.27 84.03 0.86 -13.69 16 21 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 22 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 23 N -0.95 -58.18 10.09 21.65 0.22 -57.96 16 24 Si 0.98 47.67 29.55 68.60 2.03 49.70 16 25 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 28 C 0.14 6.06 6.10 86.73 0.53 6.59 16 29 C 0.12 3.09 5.48 86.36 0.47 3.56 16 30 C -0.04 -0.81 9.45 22.73 0.21 -0.60 16 31 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 33 H 0.09 0.31 8.09 -2.38 -0.02 0.29 16 34 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.18 2.20 6.14 -2.91 -0.02 2.18 16 36 H 0.10 1.22 4.51 -2.39 -0.01 1.21 16 37 H 0.10 0.91 8.07 -2.39 -0.02 0.89 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.37 7.20 -2.39 -0.02 1.35 16 42 H 0.06 2.08 8.05 -2.39 -0.02 2.06 16 43 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 44 H 0.07 4.03 5.87 -2.39 -0.01 4.02 16 45 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 47 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.01 0.46 7.77 -2.38 -0.02 0.44 16 49 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.06 2.09 6.54 -2.39 -0.02 2.08 16 51 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -79.49 393.99 3.01 -76.48 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.92 Total: 11.31 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.72 Total: 4.96 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -6.59 Total: -120.79 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -79.49 3.01 -76.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961131013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.106 kcal (2) G-P(sol) polarization free energy of solvation -79.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds