Wall clock time and date at job start Wed Apr 1 2020 02:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31695 * 119.71902 * 2 1 4 4 C 1.31929 * 121.87845 * 180.27075 * 3 2 1 5 5 C 1.38350 * 121.07805 * 359.74578 * 4 3 2 6 6 C 1.38351 * 119.30818 * 359.97438 * 5 4 3 7 7 C 1.39523 * 119.71514 * 179.73020 * 2 1 3 8 8 C 1.47845 * 120.55932 * 359.97438 * 7 2 1 9 9 O 1.21553 * 119.99806 * 54.72952 * 8 7 2 10 10 N 1.34772 * 120.00049 * 234.73399 * 8 7 2 11 11 C 1.46928 * 120.62974 * 355.95515 * 10 8 7 12 12 C 1.53198 * 108.77875 * 126.41212 * 11 10 8 13 13 C 1.53047 * 109.30883 * 54.63255 * 12 11 10 14 14 C 1.53043 * 109.53896 * 298.64024 * 13 12 11 15 15 H 1.08998 * 109.49400 * 301.38012 * 14 13 12 16 16 C 1.53000 * 109.49552 * 181.31702 * 14 13 12 17 17 H 1.09001 * 110.91734 * 302.44976 * 16 14 13 18 18 C 1.55156 * 111.00298 * 66.34660 * 16 14 13 19 19 C 1.54331 * 102.93915 * 153.57567 * 18 16 14 20 20 N 1.47282 * 107.30681 * 337.82006 * 19 18 16 21 21 C 1.36938 * 125.79325 * 178.93034 * 20 19 18 22 22 H 1.08001 * 120.00151 * 174.93454 * 21 20 19 23 23 C 1.38816 * 119.99862 * 354.92103 * 21 20 19 24 24 N 1.31615 * 119.99936 * 5.81173 * 23 21 20 25 25 Si 1.86792 * 119.99934 * 185.80777 * 23 21 20 26 26 H 1.48498 * 109.47072 * 94.99840 * 25 23 21 27 27 H 1.48504 * 109.47409 * 214.99876 * 25 23 21 28 28 H 1.48500 * 109.47600 * 334.99992 * 25 23 21 29 29 C 1.47423 * 108.55846 * 358.92104 * 20 19 18 30 30 C 1.46925 * 120.63222 * 175.97801 * 10 8 7 31 31 H 1.09004 * 109.46924 * 274.47847 * 1 2 3 32 32 H 1.09005 * 109.47142 * 34.47849 * 1 2 3 33 33 H 1.08997 * 109.47234 * 154.47852 * 1 2 3 34 34 H 1.07994 * 119.45870 * 179.72183 * 4 3 2 35 35 H 1.08005 * 120.34338 * 180.02562 * 5 4 3 36 36 H 1.08000 * 120.85838 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.58826 * 6.62817 * 11 10 8 38 38 H 1.09001 * 109.70869 * 246.26937 * 11 10 8 39 39 H 1.08998 * 109.49763 * 294.68568 * 12 11 10 40 40 H 1.08997 * 109.49813 * 174.58760 * 12 11 10 41 41 H 1.08996 * 109.45770 * 178.61496 * 13 12 11 42 42 H 1.09004 * 109.44298 * 58.65155 * 13 12 11 43 43 H 1.09006 * 110.72412 * 271.93532 * 18 16 14 44 44 H 1.08995 * 110.72189 * 35.21312 * 18 16 14 45 45 H 1.08999 * 109.87864 * 97.22690 * 19 18 16 46 46 H 1.09006 * 109.88051 * 218.23191 * 19 18 16 47 47 H 0.97004 * 120.00134 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.36841 * 265.26154 * 29 20 19 49 49 H 1.09002 * 110.36580 * 143.04851 * 29 20 19 50 50 H 1.08999 * 109.58617 * 113.80277 * 30 10 8 51 51 H 1.08995 * 109.58656 * 353.37054 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 -0.0053 5 6 4.2365 0.0363 -0.0059 6 6 3.5987 -1.1914 -0.0002 7 6 2.1986 -1.2117 0.0057 8 6 1.4655 -2.4956 0.0123 9 8 0.6360 -2.7262 -0.8457 10 7 1.7170 -3.4103 0.9697 11 6 2.7778 -3.1842 1.9609 12 6 2.1831 -3.3408 3.3640 13 6 1.4999 -4.7058 3.4747 14 6 0.3619 -4.7928 2.4552 15 1 -0.3533 -3.9910 2.6391 16 6 -0.3414 -6.1450 2.5890 17 1 0.3630 -6.9653 2.4508 18 6 -1.0687 -6.2608 3.9546 19 6 -2.2045 -7.2625 3.6573 20 7 -2.4398 -7.2394 2.2036 21 6 -3.3545 -8.0023 1.5281 22 1 -3.5068 -7.8518 0.4695 23 6 -4.0859 -8.9695 2.2038 24 7 -3.9848 -9.0766 3.5117 25 14 -5.2135 -10.1189 1.2570 26 1 -4.4928 -11.3816 0.9551 27 1 -6.4156 -10.4186 2.0758 28 1 -5.6286 -9.4702 -0.0127 29 6 -1.5249 -6.2560 1.5958 30 6 0.9359 -4.6526 1.0418 31 1 -0.3633 0.0802 1.0246 32 1 -0.3634 0.8472 -0.5818 33 1 -0.3633 -0.9274 -0.4428 34 1 3.9735 2.1531 -0.0096 35 1 5.3152 0.0908 -0.0098 36 1 4.1660 -2.1104 -0.0001 37 1 3.1784 -2.1772 1.8442 38 1 3.5753 -3.9135 1.8186 39 1 1.4511 -2.5524 3.5390 40 1 2.9784 -3.2707 4.1061 41 1 1.0973 -4.8299 4.4800 42 1 2.2272 -5.4928 3.2751 43 1 -0.3969 -6.6548 4.7173 44 1 -1.4751 -5.2960 4.2582 45 1 -1.9064 -8.2638 3.9682 46 1 -3.1097 -6.9643 4.1864 47 1 -4.4962 -9.7522 3.9840 48 1 -2.0216 -5.2917 1.4881 49 1 -1.1748 -6.6119 0.6268 50 1 1.5815 -5.5033 0.8237 51 1 0.1212 -4.6145 0.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961222708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:12 Heat of formation + Delta-G solvation = 20.792418 kcal Electronic energy + Delta-G solvation = -30618.374231 eV Core-core repulsion = 26710.885130 eV Total energy + Delta-G solvation = -3907.489102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24921 -39.75616 -38.23234 -36.74280 -34.01737 -33.28455 -32.70355 -32.27216 -31.06445 -29.09760 -28.14175 -27.08018 -26.03904 -24.62956 -24.13870 -22.95367 -22.41474 -21.15488 -19.89191 -19.51656 -19.49071 -17.65754 -17.13569 -16.80430 -16.61847 -16.22052 -15.44820 -14.81503 -14.68851 -14.64271 -14.51452 -14.37789 -13.96790 -13.86016 -13.61957 -13.50418 -13.18733 -13.04822 -12.70186 -12.45407 -12.35523 -12.25502 -12.11772 -12.00915 -11.78837 -11.28759 -11.05738 -11.01029 -10.82596 -10.73253 -10.61595 -10.39300 -10.13072 -10.05975 -10.00876 -9.82474 -9.75113 -9.66086 -9.53658 -9.30397 -8.75723 -8.53563 -6.76340 -5.67236 -2.99045 0.44155 0.78414 2.40025 2.75038 3.34418 3.43477 3.48835 3.50770 3.89157 4.13236 4.30697 4.38872 4.50689 4.57427 4.62906 4.74000 4.76740 4.91508 5.01218 5.09701 5.15472 5.21090 5.33570 5.39778 5.43739 5.50233 5.50698 5.59626 5.62016 5.66046 5.69895 5.74204 5.76633 5.87292 5.89810 5.92738 6.00818 6.06628 6.22681 6.25992 6.27235 6.40377 6.46711 6.59516 6.63639 6.78686 7.02655 7.15760 7.54834 7.60959 7.68912 7.87575 7.92072 8.31398 9.27392 9.88272 10.55591 11.45104 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002434 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.854020 B =11499.707832 C =12247.442735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.180 3.820 3 N -0.486 5.486 4 C 0.120 3.880 5 C -0.186 4.186 6 C -0.044 4.044 7 C -0.177 4.177 8 C 0.565 3.435 9 O -0.524 6.524 10 N -0.601 5.601 11 C 0.099 3.901 12 C -0.134 4.134 13 C -0.114 4.114 14 C -0.086 4.086 15 H 0.074 0.926 16 C -0.095 4.095 17 H 0.074 0.926 18 C -0.135 4.135 19 C 0.176 3.824 20 N -0.606 5.606 21 C -0.225 4.225 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.140 3.860 30 C 0.115 3.885 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.251 0.749 48 H 0.017 0.983 49 H 0.037 0.963 50 H 0.070 0.930 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.917 18.482 -1.313 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.042 3.958 3 N -0.195 5.195 4 C -0.038 4.038 5 C -0.206 4.206 6 C -0.070 4.070 7 C -0.182 4.182 8 C 0.352 3.648 9 O -0.401 6.401 10 N -0.333 5.333 11 C -0.023 4.023 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.174 4.174 19 C 0.051 3.949 20 N -0.333 5.333 21 C -0.354 4.354 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.014 3.986 30 C -0.006 4.006 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.055 0.945 50 H 0.088 0.912 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.815 18.947 -1.730 27.471 hybrid contribution 0.103 -1.411 -0.303 1.447 sum 19.919 17.536 -2.033 26.616 Atomic orbital electron populations 1.21039 0.87975 1.05520 1.03656 1.21396 0.97369 0.86516 0.90515 1.67628 1.10032 1.28560 1.13304 1.22962 0.89386 0.98787 0.92640 1.22068 1.01778 0.92986 1.03720 1.21728 0.92766 0.99121 0.93408 1.20783 0.94770 0.95082 1.07544 1.18083 0.82320 0.82849 0.81522 1.90804 1.34273 1.78207 1.36815 1.48093 1.35803 1.19991 1.29423 1.21965 0.89762 1.02145 0.88466 1.21926 1.00675 0.98907 0.95734 1.21587 0.97460 0.96107 1.00047 1.21476 0.96821 0.98728 0.93564 0.90775 1.22316 0.96799 0.94723 0.97634 0.90719 1.22878 0.98710 1.00252 0.95530 1.21179 0.93426 0.95657 0.84617 1.44539 1.41172 1.44696 1.02867 1.19083 1.12992 1.10697 0.92592 0.90470 1.24811 1.00484 0.99442 0.95820 1.69978 1.44954 1.36330 1.05722 0.86125 0.79901 0.81200 0.78758 1.21683 1.21815 1.20627 1.21583 0.89482 0.92850 0.94698 1.21837 0.95980 0.84212 0.98570 0.90061 0.89934 0.88399 0.82261 0.84093 0.84207 0.89829 0.90984 0.91511 0.90748 0.91044 0.91743 0.92424 0.92694 0.93504 0.94455 0.93869 0.96530 0.94484 0.91155 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.87 36.01 0.36 -1.02 16 2 C 0.18 2.05 6.82 -82.17 -0.56 1.49 16 3 N -0.49 -5.16 10.26 -9.15 -0.09 -5.26 16 4 C 0.12 0.90 11.17 -17.47 -0.20 0.71 16 5 C -0.19 -1.16 10.10 -39.50 -0.40 -1.56 16 6 C -0.04 -0.34 7.60 -38.87 -0.30 -0.64 16 7 C -0.18 -1.91 4.86 -104.82 -0.51 -2.42 16 8 C 0.57 7.30 6.57 -12.33 -0.08 7.22 16 9 O -0.52 -8.67 14.55 5.32 0.08 -8.59 16 10 N -0.60 -6.76 2.97 -173.88 -0.52 -7.28 16 11 C 0.10 0.80 5.61 -3.71 -0.02 0.78 16 12 C -0.13 -1.11 6.08 -26.60 -0.16 -1.27 16 13 C -0.11 -1.17 5.03 -26.68 -0.13 -1.31 16 14 C -0.09 -1.12 1.84 -90.50 -0.17 -1.29 16 15 H 0.07 1.06 8.11 -51.93 -0.42 0.63 16 16 C -0.09 -1.57 2.56 -88.47 -0.23 -1.80 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.14 -2.45 5.57 -24.89 -0.14 -2.59 16 19 C 0.18 4.31 5.40 -2.92 -0.02 4.29 16 20 N -0.61 -15.81 3.40 -169.86 -0.58 -16.39 16 21 C -0.23 -6.44 10.27 -15.06 -0.15 -6.60 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.28 5.48 -17.43 -0.10 -0.37 16 24 N -0.92 -27.57 10.37 55.49 0.58 -26.99 16 25 Si 0.91 22.57 29.56 -169.99 -5.02 17.54 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.14 2.93 5.74 -2.53 -0.01 2.91 16 30 C 0.12 1.48 5.40 -3.71 -0.02 1.46 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.26 5.57 -51.93 -0.29 0.97 16 34 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 36 H 0.14 0.82 7.50 -52.49 -0.39 0.42 16 37 H 0.08 0.59 4.79 -51.93 -0.25 0.34 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 44 H 0.05 0.95 8.01 -51.93 -0.42 0.53 16 45 H 0.05 1.27 7.27 -51.93 -0.38 0.89 16 46 H 0.04 1.02 7.64 -51.93 -0.40 0.62 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.02 0.36 8.04 -51.93 -0.42 -0.06 16 49 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.10 1.51 6.45 -51.93 -0.33 1.18 16 LS Contribution 392.90 15.07 5.92 5.92 Total: -1.00 -34.01 392.90 -10.77 -44.79 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.30 Total: -1.74 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.83 Total: -2.00 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.61 Total: -55.92 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.01 -10.77 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.579 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds