Wall clock time and date at job start Wed Apr 1 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31695 * 119.71902 * 2 1 4 4 C 1.31929 * 121.87845 * 180.27075 * 3 2 1 5 5 C 1.38350 * 121.07805 * 359.74578 * 4 3 2 6 6 C 1.38351 * 119.30818 * 359.97438 * 5 4 3 7 7 C 1.39523 * 119.71514 * 179.73020 * 2 1 3 8 8 C 1.47845 * 120.55932 * 359.97438 * 7 2 1 9 9 O 1.21553 * 119.99806 * 54.72952 * 8 7 2 10 10 N 1.34772 * 120.00049 * 234.73399 * 8 7 2 11 11 C 1.46928 * 120.62974 * 355.95515 * 10 8 7 12 12 C 1.53198 * 108.77875 * 126.41212 * 11 10 8 13 13 C 1.53047 * 109.30883 * 54.63255 * 12 11 10 14 14 C 1.53043 * 109.53896 * 298.64024 * 13 12 11 15 15 H 1.08998 * 109.49400 * 301.38012 * 14 13 12 16 16 C 1.53000 * 109.49552 * 181.31702 * 14 13 12 17 17 H 1.09001 * 110.91734 * 302.44976 * 16 14 13 18 18 C 1.55156 * 111.00298 * 66.34660 * 16 14 13 19 19 C 1.54331 * 102.93915 * 153.57567 * 18 16 14 20 20 N 1.47282 * 107.30681 * 337.82006 * 19 18 16 21 21 C 1.36938 * 125.79325 * 178.93034 * 20 19 18 22 22 H 1.08001 * 120.00151 * 174.93454 * 21 20 19 23 23 C 1.38816 * 119.99862 * 354.92103 * 21 20 19 24 24 N 1.31615 * 119.99936 * 5.81173 * 23 21 20 25 25 Si 1.86792 * 119.99934 * 185.80777 * 23 21 20 26 26 H 1.48498 * 109.47072 * 94.99840 * 25 23 21 27 27 H 1.48504 * 109.47409 * 214.99876 * 25 23 21 28 28 H 1.48500 * 109.47600 * 334.99992 * 25 23 21 29 29 C 1.47423 * 108.55846 * 358.92104 * 20 19 18 30 30 C 1.46925 * 120.63222 * 175.97801 * 10 8 7 31 31 H 1.09004 * 109.46924 * 274.47847 * 1 2 3 32 32 H 1.09005 * 109.47142 * 34.47849 * 1 2 3 33 33 H 1.08997 * 109.47234 * 154.47852 * 1 2 3 34 34 H 1.07994 * 119.45870 * 179.72183 * 4 3 2 35 35 H 1.08005 * 120.34338 * 180.02562 * 5 4 3 36 36 H 1.08000 * 120.85838 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.58826 * 6.62817 * 11 10 8 38 38 H 1.09001 * 109.70869 * 246.26937 * 11 10 8 39 39 H 1.08998 * 109.49763 * 294.68568 * 12 11 10 40 40 H 1.08997 * 109.49813 * 174.58760 * 12 11 10 41 41 H 1.08996 * 109.45770 * 178.61496 * 13 12 11 42 42 H 1.09004 * 109.44298 * 58.65155 * 13 12 11 43 43 H 1.09006 * 110.72412 * 271.93532 * 18 16 14 44 44 H 1.08995 * 110.72189 * 35.21312 * 18 16 14 45 45 H 1.08999 * 109.87864 * 97.22690 * 19 18 16 46 46 H 1.09006 * 109.88051 * 218.23191 * 19 18 16 47 47 H 0.97004 * 120.00134 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.36841 * 265.26154 * 29 20 19 49 49 H 1.09002 * 110.36580 * 143.04851 * 29 20 19 50 50 H 1.08999 * 109.58617 * 113.80277 * 30 10 8 51 51 H 1.08995 * 109.58656 * 353.37054 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1934 -0.0053 5 6 4.2365 0.0363 -0.0059 6 6 3.5987 -1.1914 -0.0002 7 6 2.1986 -1.2117 0.0057 8 6 1.4655 -2.4956 0.0123 9 8 0.6360 -2.7262 -0.8457 10 7 1.7170 -3.4103 0.9697 11 6 2.7778 -3.1842 1.9609 12 6 2.1831 -3.3408 3.3640 13 6 1.4999 -4.7058 3.4747 14 6 0.3619 -4.7928 2.4552 15 1 -0.3533 -3.9910 2.6391 16 6 -0.3414 -6.1450 2.5890 17 1 0.3630 -6.9653 2.4508 18 6 -1.0687 -6.2608 3.9546 19 6 -2.2045 -7.2625 3.6573 20 7 -2.4398 -7.2394 2.2036 21 6 -3.3545 -8.0023 1.5281 22 1 -3.5068 -7.8518 0.4695 23 6 -4.0859 -8.9695 2.2038 24 7 -3.9848 -9.0766 3.5117 25 14 -5.2135 -10.1189 1.2570 26 1 -4.4928 -11.3816 0.9551 27 1 -6.4156 -10.4186 2.0758 28 1 -5.6286 -9.4702 -0.0127 29 6 -1.5249 -6.2560 1.5958 30 6 0.9359 -4.6526 1.0418 31 1 -0.3633 0.0802 1.0246 32 1 -0.3634 0.8472 -0.5818 33 1 -0.3633 -0.9274 -0.4428 34 1 3.9735 2.1531 -0.0096 35 1 5.3152 0.0908 -0.0098 36 1 4.1660 -2.1104 -0.0001 37 1 3.1784 -2.1772 1.8442 38 1 3.5753 -3.9135 1.8186 39 1 1.4511 -2.5524 3.5390 40 1 2.9784 -3.2707 4.1061 41 1 1.0973 -4.8299 4.4800 42 1 2.2272 -5.4928 3.2751 43 1 -0.3969 -6.6548 4.7173 44 1 -1.4751 -5.2960 4.2582 45 1 -1.9064 -8.2638 3.9682 46 1 -3.1097 -6.9643 4.1864 47 1 -4.4962 -9.7522 3.9840 48 1 -2.0216 -5.2917 1.4881 49 1 -1.1748 -6.6119 0.6268 50 1 1.5815 -5.5033 0.8237 51 1 0.1212 -4.6145 0.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961222708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:11 Heat of formation + Delta-G solvation = 0.115572 kcal Electronic energy + Delta-G solvation = -30619.270847 eV Core-core repulsion = 26710.885130 eV Total energy + Delta-G solvation = -3908.385717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.04113 -40.63413 -39.52107 -38.04734 -35.34582 -34.14594 -33.81213 -33.22271 -32.40447 -30.86469 -29.01930 -28.54666 -26.98852 -26.37840 -24.89095 -24.06958 -23.17334 -22.18837 -21.72024 -20.88542 -20.35972 -18.88912 -18.42265 -17.84149 -17.27359 -17.14458 -16.87764 -16.46711 -15.92515 -15.54245 -15.46705 -15.43426 -15.32723 -14.87760 -14.58112 -14.27282 -14.09109 -14.04370 -13.93568 -13.83656 -13.57379 -13.45948 -13.26254 -13.17877 -13.07943 -12.88677 -12.76426 -12.24371 -12.15981 -12.06530 -11.90256 -11.82414 -11.70475 -11.48040 -11.37766 -11.18328 -11.07427 -10.75779 -10.70965 -10.44122 -9.97874 -9.67596 -8.90387 -7.87931 -5.22342 -0.22321 0.18164 1.43022 1.45028 1.47969 1.54239 1.89586 2.47683 2.69379 3.23193 3.29415 3.37991 3.60574 3.62824 3.70395 3.84454 3.89828 3.92185 4.04961 4.10956 4.15926 4.25444 4.29928 4.41315 4.49723 4.54108 4.56641 4.57373 4.59104 4.61166 4.68314 4.78638 4.83444 4.88673 4.91202 4.96376 5.04529 5.06388 5.09142 5.10032 5.14092 5.17255 5.35323 5.39779 5.43959 5.49863 5.55316 5.63520 5.67483 5.78116 6.19039 6.28281 6.90118 6.99761 7.09100 7.76500 8.42121 9.23037 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019771 B = 0.002434 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.854020 B =11499.707832 C =12247.442735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.157 3.843 3 N -0.510 5.510 4 C 0.115 3.885 5 C -0.167 4.167 6 C -0.042 4.042 7 C -0.193 4.193 8 C 0.562 3.438 9 O -0.575 6.575 10 N -0.596 5.596 11 C 0.095 3.905 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.073 4.073 15 H 0.058 0.942 16 C -0.075 4.075 17 H 0.082 0.918 18 C -0.118 4.118 19 C 0.181 3.819 20 N -0.630 5.630 21 C -0.245 4.245 22 H 0.076 0.924 23 C -0.066 4.066 24 N -0.950 5.950 25 Si 0.978 3.022 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.271 1.271 29 C 0.136 3.864 30 C 0.119 3.881 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.192 0.808 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.015 0.985 46 H -0.002 1.002 47 H 0.247 0.753 48 H 0.009 0.991 49 H 0.035 0.965 50 H 0.084 0.916 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.059 19.684 -0.881 31.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.020 3.980 3 N -0.220 5.220 4 C -0.042 4.042 5 C -0.186 4.186 6 C -0.068 4.068 7 C -0.198 4.198 8 C 0.350 3.650 9 O -0.455 6.455 10 N -0.327 5.327 11 C -0.026 4.026 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.093 4.093 15 H 0.076 0.924 16 C -0.095 4.095 17 H 0.100 0.900 18 C -0.156 4.156 19 C 0.056 3.944 20 N -0.356 5.356 21 C -0.374 4.374 22 H 0.094 0.906 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.806 3.194 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.196 1.196 29 C 0.010 3.990 30 C -0.004 4.004 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.209 0.791 35 H 0.201 0.799 36 H 0.182 0.818 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.123 0.877 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.083 0.917 45 H 0.033 0.967 46 H 0.016 0.984 47 H 0.057 0.943 48 H 0.027 0.973 49 H 0.053 0.947 50 H 0.102 0.898 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.000 20.174 -1.284 31.379 hybrid contribution -1.146 -1.705 -0.465 2.106 sum 22.854 18.469 -1.749 29.435 Atomic orbital electron populations 1.20924 0.89119 1.04199 1.03622 1.21318 0.97163 0.87320 0.92232 1.67613 1.11890 1.28199 1.14313 1.23626 0.88458 1.00951 0.91203 1.22502 1.03657 0.91537 1.00911 1.22051 0.91304 1.00991 0.92418 1.20645 0.96166 0.93385 1.09633 1.18509 0.81759 0.83661 0.81045 1.90773 1.36558 1.79254 1.38963 1.48150 1.36010 1.18920 1.29647 1.22274 0.89184 1.03886 0.87244 1.21906 1.01131 0.96995 0.96612 1.21575 0.96497 0.98050 0.98698 1.21314 0.97489 0.95601 0.94923 0.92350 1.22179 0.95237 0.97287 0.94766 0.89961 1.22726 0.96909 0.98840 0.97138 1.20997 0.94038 0.95724 0.83637 1.44893 1.41631 1.45201 1.03889 1.19442 1.13758 1.11295 0.92920 0.90567 1.25669 1.02353 1.01057 0.96795 1.70196 1.45832 1.36746 1.07078 0.85067 0.77708 0.78979 0.77651 1.21060 1.21887 1.19565 1.21743 0.90364 0.91051 0.95799 1.21637 0.95657 0.85651 0.97440 0.89796 0.89691 0.90904 0.79113 0.79935 0.81825 0.88376 0.88376 0.92736 0.87659 0.90874 0.90224 0.89477 0.91725 0.96691 0.98414 0.94334 0.97347 0.94667 0.89818 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 9.87 71.24 0.70 -2.18 16 2 C 0.16 3.56 6.82 42.89 0.29 3.85 16 3 N -0.51 -10.18 10.26 -182.85 -1.88 -12.06 16 4 C 0.11 1.34 11.17 84.70 0.95 2.29 16 5 C -0.17 -1.32 10.10 22.32 0.23 -1.09 16 6 C -0.04 -0.51 7.60 22.73 0.17 -0.33 16 7 C -0.19 -3.98 4.86 -19.99 -0.10 -4.07 16 8 C 0.56 14.64 6.57 86.79 0.57 15.21 16 9 O -0.58 -20.28 14.55 -3.88 -0.06 -20.34 16 10 N -0.60 -12.70 2.97 -822.31 -2.44 -15.14 16 11 C 0.10 1.18 5.61 86.36 0.48 1.67 16 12 C -0.13 -1.64 6.08 30.68 0.19 -1.45 16 13 C -0.11 -1.90 5.03 30.62 0.15 -1.74 16 14 C -0.07 -1.83 1.84 -10.72 -0.02 -1.85 16 15 H 0.06 1.66 8.11 -2.39 -0.02 1.64 16 16 C -0.07 -2.44 2.56 -9.40 -0.02 -2.46 16 17 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 18 C -0.12 -4.22 5.57 31.78 0.18 -4.04 16 19 C 0.18 9.22 5.40 86.68 0.47 9.69 16 20 N -0.63 -34.17 3.40 -691.31 -2.35 -36.53 16 21 C -0.25 -14.53 10.27 84.03 0.86 -13.67 16 22 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.07 -3.90 5.48 84.86 0.47 -3.44 16 24 N -0.95 -58.96 10.37 21.65 0.22 -58.74 16 25 Si 0.98 47.54 29.56 68.60 2.03 49.57 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 29 C 0.14 5.86 5.74 86.85 0.50 6.36 16 30 C 0.12 2.99 5.40 86.36 0.47 3.46 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.07 2.09 5.57 -2.39 -0.01 2.08 16 34 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 35 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 36 H 0.16 1.15 7.50 -2.91 -0.02 1.13 16 37 H 0.10 0.98 4.79 -2.39 -0.01 0.97 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 42 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.09 2.64 8.11 -2.38 -0.02 2.62 16 44 H 0.06 2.20 8.01 -2.39 -0.02 2.18 16 45 H 0.01 0.84 7.27 -2.39 -0.02 0.82 16 46 H 0.00 -0.14 7.64 -2.38 -0.02 -0.16 16 47 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 48 H 0.01 0.39 8.04 -2.39 -0.02 0.37 16 49 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 50 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.06 2.10 6.45 -2.39 -0.02 2.09 16 Total: -1.00 -80.74 392.90 2.97 -77.77 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.91 Total: 9.27 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: 6.53 Total: 6.19 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -6.45 Total: -122.47 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.34 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -80.74 2.97 -77.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.885 kcal (2) G-P(sol) polarization free energy of solvation -80.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds