Wall clock time and date at job start Wed Apr 1 2020 02:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31701 * 119.71583 * 2 1 4 4 C 1.31922 * 121.87960 * 180.02562 * 3 2 1 5 5 C 1.38353 * 121.08122 * 0.02562 * 4 3 2 6 6 C 1.38358 * 119.30084 * 359.71454 * 5 4 3 7 7 C 1.39521 * 119.72068 * 180.02562 * 2 1 3 8 8 C 1.47843 * 120.55421 * 359.97438 * 7 2 1 9 9 O 1.21558 * 119.99631 * 306.66450 * 8 7 2 10 10 N 1.34776 * 120.00369 * 126.67414 * 8 7 2 11 11 C 1.46932 * 120.62763 * 3.68148 * 10 8 7 12 12 C 1.52759 * 109.00911 * 233.58949 * 11 10 8 13 13 C 1.53042 * 109.38158 * 305.58895 * 12 11 10 14 14 C 1.53040 * 109.54051 * 61.24090 * 13 12 11 15 15 H 1.08997 * 109.52507 * 58.59877 * 14 13 12 16 16 C 1.52998 * 109.50134 * 178.68555 * 14 13 12 17 17 H 1.09005 * 110.63931 * 62.97573 * 16 14 13 18 18 C 1.55157 * 110.71809 * 299.83845 * 16 14 13 19 19 C 1.54913 * 101.58327 * 206.13454 * 18 16 14 20 20 N 1.47429 * 104.83105 * 37.00612 * 19 18 16 21 21 C 1.36929 * 125.64711 * 155.90730 * 20 19 18 22 22 H 1.07996 * 120.00063 * 179.97438 * 21 20 19 23 23 C 1.38818 * 120.00089 * 359.97438 * 21 20 19 24 24 N 1.31619 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99808 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46986 * 90.00096 * 25 23 21 27 27 H 1.48505 * 109.46752 * 209.99579 * 25 23 21 28 28 H 1.48501 * 109.47132 * 329.99775 * 25 23 21 29 29 C 1.47019 * 108.70313 * 335.87477 * 20 19 18 30 30 C 1.46926 * 120.63498 * 183.96580 * 10 8 7 31 31 H 1.09002 * 109.46596 * 274.22658 * 1 2 3 32 32 H 1.08998 * 109.47292 * 34.22430 * 1 2 3 33 33 H 1.09001 * 109.46826 * 154.23177 * 1 2 3 34 34 H 1.07994 * 119.45995 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.34929 * 180.02562 * 5 4 3 36 36 H 1.07999 * 120.85446 * 180.28498 * 6 5 4 37 37 H 1.09003 * 109.58357 * 353.42138 * 11 10 8 38 38 H 1.08998 * 109.58554 * 113.84486 * 11 10 8 39 39 H 1.09003 * 109.56525 * 185.55369 * 12 11 10 40 40 H 1.08996 * 109.35921 * 65.49683 * 12 11 10 41 41 H 1.09002 * 109.45820 * 301.21848 * 13 12 11 42 42 H 1.08995 * 109.45340 * 181.25397 * 13 12 11 43 43 H 1.09001 * 111.00517 * 324.20650 * 18 16 14 44 44 H 1.08998 * 111.00509 * 88.01907 * 18 16 14 45 45 H 1.08998 * 110.36493 * 155.84615 * 19 18 16 46 46 H 1.08996 * 110.36455 * 278.17220 * 19 18 16 47 47 H 0.96992 * 119.99605 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.88175 * 241.63846 * 29 20 19 49 49 H 1.08996 * 109.88608 * 120.47323 * 29 20 19 50 50 H 1.08994 * 109.58884 * 246.15712 * 30 10 8 51 51 H 1.09005 * 109.58109 * 6.58046 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0005 5 6 4.2366 0.0365 -0.0016 6 6 3.5987 -1.1912 0.0039 7 6 2.1987 -1.2117 -0.0005 8 6 1.4656 -2.4956 -0.0005 9 8 0.6187 -2.7118 0.8442 10 7 1.7365 -3.4263 -0.9370 11 6 2.8123 -3.2133 -1.9148 12 6 2.2484 -3.3962 -3.3227 13 6 1.5682 -4.7635 -3.4237 14 6 0.4108 -4.8344 -2.4250 15 1 -0.3012 -4.0364 -2.6352 16 6 -0.2890 -6.1892 -2.5496 17 1 0.3927 -6.9992 -2.2900 18 6 -0.8545 -6.3853 -3.9810 19 6 -2.0229 -7.3690 -3.7219 20 7 -2.5915 -6.9473 -2.4287 21 6 -3.8722 -7.1826 -2.0053 22 1 -4.1937 -6.8312 -1.0361 23 6 -4.7575 -7.8729 -2.8220 24 7 -4.3658 -8.3007 -4.0035 25 14 -6.5045 -8.1945 -2.2441 26 1 -7.3798 -7.0713 -2.6652 27 1 -6.9993 -9.4596 -2.8442 28 1 -6.5230 -8.3084 -0.7635 29 6 -1.5554 -6.2328 -1.6687 30 6 0.9576 -4.6703 -1.0034 31 1 -0.3632 0.0757 1.0249 32 1 -0.3634 0.8497 -0.5780 33 1 -0.3633 -0.9255 -0.4468 34 1 3.9734 2.1533 -0.0001 35 1 5.3153 0.0911 -0.0016 36 1 4.1661 -2.1102 0.0078 37 1 3.2072 -2.2029 -1.8093 38 1 3.6083 -3.9385 -1.7459 39 1 3.0577 -3.3379 -4.0505 40 1 1.5195 -2.6115 -3.5247 41 1 2.2918 -5.5466 -3.1973 42 1 1.1849 -4.9044 -4.4342 43 1 -1.2204 -5.4431 -4.3891 44 1 -0.1075 -6.8296 -4.6388 45 1 -2.7708 -7.2858 -4.5104 46 1 -1.6507 -8.3914 -3.6572 47 1 -4.9845 -8.7826 -4.5743 48 1 -1.3436 -6.7642 -0.7409 49 1 -1.8894 -5.2187 -1.4495 50 1 1.5992 -5.5167 -0.7586 51 1 0.1291 -4.6208 -0.2967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961222710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:16 Heat of formation + Delta-G solvation = 22.073645 kcal Electronic energy + Delta-G solvation = -30669.701080 eV Core-core repulsion = 26762.267536 eV Total energy + Delta-G solvation = -3907.433543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.24180 -39.75761 -38.23487 -36.73539 -34.02521 -33.29257 -32.71094 -32.26881 -31.05724 -29.08510 -28.12829 -27.09359 -26.04351 -24.63248 -24.13135 -22.92681 -22.40024 -21.15498 -19.96227 -19.49653 -19.38497 -17.62743 -17.14343 -16.82536 -16.61380 -16.21488 -15.47935 -14.85583 -14.72147 -14.62298 -14.47295 -14.37556 -13.92634 -13.81998 -13.57475 -13.49634 -13.17908 -13.00871 -12.71815 -12.51268 -12.43915 -12.27628 -12.20213 -11.82091 -11.56648 -11.24334 -11.10145 -11.00998 -10.84872 -10.76648 -10.67643 -10.40231 -10.11824 -10.07842 -10.02986 -9.79691 -9.73447 -9.66050 -9.42984 -9.30668 -8.74667 -8.59811 -6.76879 -5.60380 -3.01300 0.44665 0.78824 2.42871 2.76059 3.36061 3.43499 3.48436 3.50529 3.88740 4.14244 4.30960 4.39083 4.50977 4.57543 4.63478 4.75926 4.77973 4.93222 5.01805 5.10829 5.16091 5.22601 5.31603 5.40090 5.48234 5.50033 5.52682 5.59837 5.61441 5.65259 5.68400 5.73798 5.79372 5.86773 5.89118 5.94749 6.02889 6.07055 6.22009 6.27117 6.29144 6.43085 6.47561 6.64716 6.67721 6.82548 7.03254 7.16928 7.55299 7.57021 7.69141 7.90716 7.93734 8.41968 9.28073 9.89121 10.54473 11.43642 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.002544 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.944557 B =11002.911107 C =11984.887258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.179 3.821 3 N -0.486 5.486 4 C 0.120 3.880 5 C -0.186 4.186 6 C -0.044 4.044 7 C -0.177 4.177 8 C 0.564 3.436 9 O -0.523 6.523 10 N -0.602 5.602 11 C 0.100 3.900 12 C -0.135 4.135 13 C -0.114 4.114 14 C -0.087 4.087 15 H 0.075 0.925 16 C -0.092 4.092 17 H 0.070 0.930 18 C -0.136 4.136 19 C 0.151 3.849 20 N -0.605 5.605 21 C -0.219 4.219 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.140 3.860 30 C 0.116 3.884 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.105 0.895 46 H 0.010 0.990 47 H 0.251 0.749 48 H 0.019 0.981 49 H 0.023 0.977 50 H 0.069 0.931 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.269 15.800 2.774 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.041 3.959 3 N -0.195 5.195 4 C -0.037 4.037 5 C -0.206 4.206 6 C -0.070 4.070 7 C -0.182 4.182 8 C 0.351 3.649 9 O -0.399 6.399 10 N -0.334 5.334 11 C -0.023 4.023 12 C -0.173 4.173 13 C -0.152 4.152 14 C -0.106 4.106 15 H 0.093 0.907 16 C -0.112 4.112 17 H 0.089 0.911 18 C -0.174 4.174 19 C 0.026 3.974 20 N -0.331 5.331 21 C -0.347 4.347 22 H 0.095 0.905 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.744 3.256 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.014 3.986 30 C -0.006 4.006 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.178 0.822 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.041 0.959 50 H 0.087 0.913 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 21.128 16.333 3.180 26.893 hybrid contribution -0.114 -1.037 0.269 1.077 sum 21.014 15.296 3.450 26.219 Atomic orbital electron populations 1.20823 0.87820 1.03761 1.04129 1.21415 0.97364 0.86551 0.90526 1.67615 1.10044 1.28521 1.13327 1.22961 0.89368 0.98793 0.92610 1.22072 1.01772 0.92986 1.03763 1.21739 0.92796 0.99116 0.93385 1.20808 0.94770 0.95054 1.07550 1.18081 0.82525 0.82854 0.81486 1.90837 1.33193 1.78908 1.36994 1.48082 1.35059 1.19278 1.31020 1.21895 0.89491 1.02181 0.88757 1.21856 1.00828 0.98929 0.95711 1.21588 0.97279 0.96035 1.00277 1.21517 0.96839 0.98722 0.93553 0.90659 1.22142 0.96421 0.94761 0.97851 0.91122 1.23024 0.99137 1.00877 0.94387 1.21919 0.92650 0.92317 0.90469 1.44512 1.08081 1.64680 1.15799 1.19102 0.85719 1.29381 1.00538 0.90550 1.24777 0.98534 1.00767 0.96777 1.69805 1.34054 1.43539 1.09918 0.86082 0.84388 0.77342 0.77788 1.21631 1.21702 1.20741 1.21335 0.88157 0.95391 0.93682 1.21836 0.96076 0.84175 0.98502 0.89328 0.90166 0.90272 0.82243 0.84089 0.84197 0.89776 0.91054 0.90702 0.91496 0.91817 0.90921 0.92309 0.92586 0.87761 0.97238 0.93845 0.96337 0.95917 0.91260 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.42 36.01 0.34 -0.89 16 2 C 0.18 2.08 6.82 -82.17 -0.56 1.52 16 3 N -0.49 -5.23 10.26 -9.15 -0.09 -5.33 16 4 C 0.12 0.92 11.17 -17.47 -0.20 0.72 16 5 C -0.19 -1.18 10.10 -39.49 -0.40 -1.58 16 6 C -0.04 -0.35 7.57 -38.87 -0.29 -0.64 16 7 C -0.18 -1.94 4.90 -104.82 -0.51 -2.46 16 8 C 0.56 7.43 6.16 -12.33 -0.08 7.35 16 9 O -0.52 -8.81 15.36 5.31 0.08 -8.73 16 10 N -0.60 -6.91 2.98 -174.14 -0.52 -7.43 16 11 C 0.10 0.82 5.52 -3.93 -0.02 0.80 16 12 C -0.14 -1.16 6.06 -26.83 -0.16 -1.32 16 13 C -0.11 -1.20 4.97 -26.69 -0.13 -1.33 16 14 C -0.09 -1.16 1.74 -90.50 -0.16 -1.32 16 15 H 0.08 1.14 8.06 -51.93 -0.42 0.72 16 16 C -0.09 -1.54 2.49 -88.79 -0.22 -1.76 16 17 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.14 -2.50 5.38 -24.58 -0.13 -2.63 16 19 C 0.15 3.70 5.89 -2.52 -0.01 3.69 16 20 N -0.60 -15.86 3.39 -170.08 -0.58 -16.44 16 21 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 22 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 23 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 24 N -0.92 -27.38 10.09 55.49 0.56 -26.82 16 25 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.14 2.98 6.10 -3.07 -0.02 2.96 16 30 C 0.12 1.50 5.47 -3.71 -0.02 1.48 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.99 6.58 -51.93 -0.34 0.65 16 34 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 36 H 0.14 0.82 7.40 -52.49 -0.39 0.43 16 37 H 0.08 0.61 4.73 -51.93 -0.25 0.36 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.80 7.20 -51.93 -0.37 0.43 16 43 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 44 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 45 H 0.10 2.88 5.87 -51.93 -0.31 2.57 16 46 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.02 0.50 7.77 -51.93 -0.40 0.09 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.10 1.53 6.57 -51.93 -0.34 1.19 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -33.83 392.46 -10.76 -44.59 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.27 Total: -1.01 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.83 Total: -2.32 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.63 Total: -56.01 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.73 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.83 -10.76 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.666 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds