Wall clock time and date at job start Wed Apr 1 2020 02:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31701 * 119.71583 * 2 1 4 4 C 1.31922 * 121.87960 * 180.02562 * 3 2 1 5 5 C 1.38353 * 121.08122 * 0.02562 * 4 3 2 6 6 C 1.38358 * 119.30084 * 359.71454 * 5 4 3 7 7 C 1.39521 * 119.72068 * 180.02562 * 2 1 3 8 8 C 1.47843 * 120.55421 * 359.97438 * 7 2 1 9 9 O 1.21558 * 119.99631 * 306.66450 * 8 7 2 10 10 N 1.34776 * 120.00369 * 126.67414 * 8 7 2 11 11 C 1.46932 * 120.62763 * 3.68148 * 10 8 7 12 12 C 1.52759 * 109.00911 * 233.58949 * 11 10 8 13 13 C 1.53042 * 109.38158 * 305.58895 * 12 11 10 14 14 C 1.53040 * 109.54051 * 61.24090 * 13 12 11 15 15 H 1.08997 * 109.52507 * 58.59877 * 14 13 12 16 16 C 1.52998 * 109.50134 * 178.68555 * 14 13 12 17 17 H 1.09005 * 110.63931 * 62.97573 * 16 14 13 18 18 C 1.55157 * 110.71809 * 299.83845 * 16 14 13 19 19 C 1.54913 * 101.58327 * 206.13454 * 18 16 14 20 20 N 1.47429 * 104.83105 * 37.00612 * 19 18 16 21 21 C 1.36929 * 125.64711 * 155.90730 * 20 19 18 22 22 H 1.07996 * 120.00063 * 179.97438 * 21 20 19 23 23 C 1.38818 * 120.00089 * 359.97438 * 21 20 19 24 24 N 1.31619 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99808 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46986 * 90.00096 * 25 23 21 27 27 H 1.48505 * 109.46752 * 209.99579 * 25 23 21 28 28 H 1.48501 * 109.47132 * 329.99775 * 25 23 21 29 29 C 1.47019 * 108.70313 * 335.87477 * 20 19 18 30 30 C 1.46926 * 120.63498 * 183.96580 * 10 8 7 31 31 H 1.09002 * 109.46596 * 274.22658 * 1 2 3 32 32 H 1.08998 * 109.47292 * 34.22430 * 1 2 3 33 33 H 1.09001 * 109.46826 * 154.23177 * 1 2 3 34 34 H 1.07994 * 119.45995 * 180.02562 * 4 3 2 35 35 H 1.08003 * 120.34929 * 180.02562 * 5 4 3 36 36 H 1.07999 * 120.85446 * 180.28498 * 6 5 4 37 37 H 1.09003 * 109.58357 * 353.42138 * 11 10 8 38 38 H 1.08998 * 109.58554 * 113.84486 * 11 10 8 39 39 H 1.09003 * 109.56525 * 185.55369 * 12 11 10 40 40 H 1.08996 * 109.35921 * 65.49683 * 12 11 10 41 41 H 1.09002 * 109.45820 * 301.21848 * 13 12 11 42 42 H 1.08995 * 109.45340 * 181.25397 * 13 12 11 43 43 H 1.09001 * 111.00517 * 324.20650 * 18 16 14 44 44 H 1.08998 * 111.00509 * 88.01907 * 18 16 14 45 45 H 1.08998 * 110.36493 * 155.84615 * 19 18 16 46 46 H 1.08996 * 110.36455 * 278.17220 * 19 18 16 47 47 H 0.96992 * 119.99605 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.88175 * 241.63846 * 29 20 19 49 49 H 1.08996 * 109.88608 * 120.47323 * 29 20 19 50 50 H 1.08994 * 109.58884 * 246.15712 * 30 10 8 51 51 H 1.09005 * 109.58109 * 6.58046 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0005 5 6 4.2366 0.0365 -0.0016 6 6 3.5987 -1.1912 0.0039 7 6 2.1987 -1.2117 -0.0005 8 6 1.4656 -2.4956 -0.0005 9 8 0.6187 -2.7118 0.8442 10 7 1.7365 -3.4263 -0.9370 11 6 2.8123 -3.2133 -1.9148 12 6 2.2484 -3.3962 -3.3227 13 6 1.5682 -4.7635 -3.4237 14 6 0.4108 -4.8344 -2.4250 15 1 -0.3012 -4.0364 -2.6352 16 6 -0.2890 -6.1892 -2.5496 17 1 0.3927 -6.9992 -2.2900 18 6 -0.8545 -6.3853 -3.9810 19 6 -2.0229 -7.3690 -3.7219 20 7 -2.5915 -6.9473 -2.4287 21 6 -3.8722 -7.1826 -2.0053 22 1 -4.1937 -6.8312 -1.0361 23 6 -4.7575 -7.8729 -2.8220 24 7 -4.3658 -8.3007 -4.0035 25 14 -6.5045 -8.1945 -2.2441 26 1 -7.3798 -7.0713 -2.6652 27 1 -6.9993 -9.4596 -2.8442 28 1 -6.5230 -8.3084 -0.7635 29 6 -1.5554 -6.2328 -1.6687 30 6 0.9576 -4.6703 -1.0034 31 1 -0.3632 0.0757 1.0249 32 1 -0.3634 0.8497 -0.5780 33 1 -0.3633 -0.9255 -0.4468 34 1 3.9734 2.1533 -0.0001 35 1 5.3153 0.0911 -0.0016 36 1 4.1661 -2.1102 0.0078 37 1 3.2072 -2.2029 -1.8093 38 1 3.6083 -3.9385 -1.7459 39 1 3.0577 -3.3379 -4.0505 40 1 1.5195 -2.6115 -3.5247 41 1 2.2918 -5.5466 -3.1973 42 1 1.1849 -4.9044 -4.4342 43 1 -1.2204 -5.4431 -4.3891 44 1 -0.1075 -6.8296 -4.6388 45 1 -2.7708 -7.2858 -4.5104 46 1 -1.6507 -8.3914 -3.6572 47 1 -4.9845 -8.7826 -4.5743 48 1 -1.3436 -6.7642 -0.7409 49 1 -1.8894 -5.2187 -1.4495 50 1 1.5992 -5.5167 -0.7586 51 1 0.1291 -4.6208 -0.2967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961222710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:15 Heat of formation + Delta-G solvation = 1.515365 kcal Electronic energy + Delta-G solvation = -30670.592554 eV Core-core repulsion = 26762.267536 eV Total energy + Delta-G solvation = -3908.325017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05127 -40.65616 -39.53838 -38.05096 -35.37788 -34.15543 -33.83563 -33.22812 -32.42337 -30.84721 -29.03180 -28.56919 -27.01305 -26.38367 -24.90091 -24.04264 -23.18599 -22.24188 -21.73546 -20.81331 -20.36066 -18.92002 -18.43026 -17.86945 -17.28548 -17.13969 -16.97066 -16.45571 -15.95628 -15.58368 -15.46841 -15.40384 -15.30356 -14.77065 -14.56916 -14.28959 -14.25793 -14.13334 -13.92632 -13.71231 -13.53207 -13.40949 -13.25089 -13.23432 -13.06394 -12.94389 -12.74179 -12.29242 -12.17632 -12.08387 -11.94273 -11.83358 -11.71549 -11.45783 -11.31106 -11.18489 -11.09874 -10.77328 -10.74618 -10.45394 -10.00967 -9.67796 -8.89803 -7.79809 -5.23968 -0.23501 0.17235 1.42910 1.45142 1.48550 1.54016 1.89397 2.47201 2.69240 3.20807 3.28609 3.36783 3.59458 3.67176 3.70423 3.79512 3.88944 3.91536 4.04778 4.10199 4.16290 4.24018 4.29984 4.41424 4.48608 4.50637 4.55518 4.56252 4.58344 4.60392 4.69036 4.76455 4.82494 4.87077 4.89489 4.99206 5.01990 5.03480 5.06434 5.09783 5.13526 5.19206 5.35651 5.38850 5.43235 5.48866 5.53782 5.62546 5.68364 5.82048 6.27602 6.30668 6.89169 6.99128 7.10048 7.77513 8.41206 9.21790 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.002544 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.944557 B =11002.911107 C =11984.887258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.156 3.844 3 N -0.510 5.510 4 C 0.115 3.885 5 C -0.166 4.166 6 C -0.041 4.041 7 C -0.194 4.194 8 C 0.560 3.440 9 O -0.576 6.576 10 N -0.598 5.598 11 C 0.096 3.904 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.075 4.075 15 H 0.050 0.950 16 C -0.075 4.075 17 H 0.088 0.912 18 C -0.117 4.117 19 C 0.150 3.850 20 N -0.628 5.628 21 C -0.243 4.243 22 H 0.073 0.927 23 C -0.066 4.066 24 N -0.947 5.947 25 Si 0.980 3.020 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.273 1.273 29 C 0.136 3.864 30 C 0.119 3.881 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.193 0.807 35 H 0.185 0.815 36 H 0.166 0.834 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.069 0.931 46 H -0.012 1.012 47 H 0.248 0.752 48 H 0.014 0.986 49 H 0.011 0.989 50 H 0.088 0.912 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.481 16.876 2.231 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.018 3.982 3 N -0.220 5.220 4 C -0.042 4.042 5 C -0.185 4.185 6 C -0.067 4.067 7 C -0.199 4.199 8 C 0.348 3.652 9 O -0.456 6.456 10 N -0.329 5.329 11 C -0.026 4.026 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.094 4.094 15 H 0.068 0.932 16 C -0.094 4.094 17 H 0.107 0.893 18 C -0.155 4.155 19 C 0.026 3.974 20 N -0.355 5.355 21 C -0.372 4.372 22 H 0.091 0.909 23 C -0.259 4.259 24 N -0.597 5.597 25 Si 0.807 3.193 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.198 1.198 29 C 0.011 3.989 30 C -0.003 4.003 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.210 0.790 35 H 0.202 0.798 36 H 0.183 0.817 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.109 0.891 45 H 0.087 0.913 46 H 0.006 0.994 47 H 0.058 0.942 48 H 0.032 0.968 49 H 0.029 0.971 50 H 0.106 0.894 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.384 17.424 2.618 30.900 hybrid contribution -1.371 -1.321 0.459 1.958 sum 24.014 16.104 3.077 29.077 Atomic orbital electron populations 1.20701 0.89120 1.02832 1.03458 1.21311 0.97065 0.87425 0.92380 1.67597 1.11950 1.28114 1.14320 1.23639 0.88404 1.01010 0.91147 1.22518 1.03692 0.91495 1.00832 1.22071 0.91241 1.01061 0.92338 1.20672 0.96249 0.93304 1.09655 1.18524 0.81948 0.83698 0.80996 1.90801 1.35564 1.79965 1.39246 1.48153 1.35308 1.18231 1.31193 1.22212 0.88881 1.04018 0.87442 1.21842 1.01271 0.96946 0.96723 1.21576 0.96260 0.98104 0.98809 1.21349 0.97469 0.95556 0.95069 0.93161 1.22049 0.94622 0.97480 0.95265 0.89348 1.22842 0.97483 0.99123 0.96047 1.21761 0.93847 0.92923 0.88907 1.44855 1.08415 1.65020 1.17166 1.19427 0.87399 1.29658 1.00682 0.90934 1.25624 1.02423 1.00813 0.97017 1.70057 1.35045 1.43885 1.10719 0.85063 0.79497 0.77025 0.77666 1.21133 1.21500 1.19838 1.21497 0.89339 0.93857 0.94201 1.21642 0.95737 0.85745 0.97195 0.90274 0.89427 0.92449 0.79041 0.79814 0.81670 0.88345 0.88111 0.87467 0.93155 0.89765 0.91009 0.92523 0.89092 0.91255 0.99401 0.94240 0.96795 0.97133 0.89374 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.58 9.42 71.24 0.67 -1.91 16 2 C 0.16 3.63 6.82 42.89 0.29 3.92 16 3 N -0.51 -10.40 10.26 -182.85 -1.88 -12.27 16 4 C 0.12 1.37 11.17 84.71 0.95 2.32 16 5 C -0.17 -1.32 10.10 22.33 0.23 -1.10 16 6 C -0.04 -0.51 7.57 22.73 0.17 -0.33 16 7 C -0.19 -4.09 4.90 -19.99 -0.10 -4.19 16 8 C 0.56 15.01 6.16 86.79 0.53 15.55 16 9 O -0.58 -20.82 15.36 -3.90 -0.06 -20.87 16 10 N -0.60 -13.09 2.98 -823.13 -2.45 -15.54 16 11 C 0.10 1.22 5.52 86.22 0.48 1.69 16 12 C -0.13 -1.76 6.06 30.53 0.19 -1.57 16 13 C -0.11 -1.95 4.97 30.62 0.15 -1.80 16 14 C -0.07 -1.94 1.74 -10.72 -0.02 -1.96 16 15 H 0.05 1.57 8.06 -2.39 -0.02 1.55 16 16 C -0.07 -2.46 2.49 -9.61 -0.02 -2.48 16 17 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 18 C -0.12 -4.23 5.38 31.99 0.17 -4.05 16 19 C 0.15 7.61 5.89 86.86 0.51 8.12 16 20 N -0.63 -34.37 3.39 -692.00 -2.35 -36.72 16 21 C -0.24 -14.48 10.27 84.04 0.86 -13.62 16 22 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 23 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 24 N -0.95 -58.10 10.09 21.65 0.22 -57.88 16 25 Si 0.98 47.62 29.55 68.60 2.03 49.65 16 26 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 28 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 29 C 0.14 6.03 6.10 86.73 0.53 6.56 16 30 C 0.12 3.06 5.47 86.36 0.47 3.54 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.63 6.58 -2.39 -0.02 1.61 16 34 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.18 -0.07 8.06 -2.91 -0.02 -0.09 16 36 H 0.17 1.14 7.40 -2.91 -0.02 1.12 16 37 H 0.10 1.02 4.73 -2.39 -0.01 1.01 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.33 7.20 -2.39 -0.02 1.31 16 43 H 0.06 2.08 8.05 -2.39 -0.02 2.06 16 44 H 0.09 2.70 8.08 -2.39 -0.02 2.68 16 45 H 0.07 4.01 5.87 -2.39 -0.01 3.99 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 48 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.01 0.49 7.77 -2.39 -0.02 0.48 16 50 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.06 2.06 6.57 -2.38 -0.02 2.05 16 Total: -1.00 -80.67 392.46 2.95 -77.72 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.91 Total: 10.69 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.53 Total: 5.23 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -6.46 Total: -122.41 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.87 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -80.67 2.95 -77.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.237 kcal (2) G-P(sol) polarization free energy of solvation -80.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds