Wall clock time and date at job start Wed Apr 1 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38174 * 119.55142 * 2 1 4 4 C 1.39803 * 118.99833 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92007 * 179.97438 * 4 3 2 6 6 O 1.21519 * 120.00248 * 320.41925 * 5 4 3 7 7 N 1.34776 * 120.00025 * 140.42108 * 5 4 3 8 8 C 1.46923 * 120.63453 * 174.18059 * 7 5 4 9 9 C 1.53196 * 108.77535 * 126.36780 * 8 7 5 10 10 C 1.53039 * 109.31055 * 54.63857 * 9 8 7 11 11 C 1.53041 * 109.53676 * 298.63176 * 10 9 8 12 12 H 1.08994 * 109.50060 * 301.41236 * 11 10 9 13 13 C 1.53005 * 109.49368 * 181.31605 * 11 10 9 14 14 H 1.08998 * 110.64029 * 301.85161 * 13 11 10 15 15 C 1.55160 * 110.71923 * 65.19130 * 13 11 10 16 16 C 1.54907 * 101.58158 * 153.86413 * 15 13 11 17 17 N 1.47428 * 104.82856 * 322.98564 * 16 15 13 18 18 C 1.36942 * 125.64703 * 204.09387 * 17 16 15 19 19 H 1.07999 * 120.00090 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99733 * 0.04557 * 18 17 16 21 21 N 1.31613 * 120.00195 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99735 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47193 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47373 * 119.99681 * 22 20 18 25 25 H 1.48504 * 109.46817 * 240.00024 * 22 20 18 26 26 C 1.47016 * 108.70704 * 24.13197 * 17 16 15 27 27 C 1.46926 * 120.62962 * 354.15803 * 7 5 4 28 28 C 1.39831 * 118.15560 * 0.26032 * 4 3 2 29 29 C 1.38127 * 119.00155 * 359.47201 * 28 4 3 30 30 N 1.31797 * 119.55304 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46967 * 89.99498 * 1 2 3 32 32 H 1.09004 * 109.47293 * 209.99820 * 1 2 3 33 33 H 1.09005 * 109.46985 * 329.99749 * 1 2 3 34 34 H 1.07997 * 120.50373 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.59075 * 246.15928 * 8 7 5 36 36 H 1.09004 * 109.58334 * 6.58365 * 8 7 5 37 37 H 1.09002 * 109.49343 * 174.58750 * 9 8 7 38 38 H 1.08997 * 109.49966 * 294.68648 * 9 8 7 39 39 H 1.09001 * 109.45988 * 178.61427 * 10 9 8 40 40 H 1.08994 * 109.45996 * 58.65441 * 10 9 8 41 41 H 1.08998 * 110.99752 * 271.93541 * 15 13 11 42 42 H 1.08998 * 111.00219 * 35.78657 * 15 13 11 43 43 H 1.09000 * 110.36296 * 204.15123 * 16 15 13 44 44 H 1.08991 * 110.46157 * 81.87432 * 16 15 13 45 45 H 0.97001 * 120.00415 * 179.97438 * 21 20 18 46 46 H 1.08990 * 109.88636 * 239.52407 * 26 17 16 47 47 H 1.09004 * 110.01402 * 118.42079 * 26 17 16 48 48 H 1.09000 * 109.58593 * 353.42014 * 27 7 5 49 49 H 1.09004 * 109.58803 * 113.69895 * 27 7 5 50 50 H 1.08003 * 120.50017 * 179.72616 * 28 4 3 51 51 H 1.08004 * 119.55369 * 180.27769 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 0.0005 5 6 4.3599 2.4520 0.0000 6 8 3.9856 3.3933 -0.6713 7 7 5.4787 2.5576 0.7440 8 6 6.3253 3.7552 0.6572 9 6 6.5286 4.3186 2.0672 10 6 7.0851 3.2200 2.9758 11 6 6.0830 2.0662 3.0565 12 1 5.1325 2.4360 3.4409 13 6 6.6257 0.9830 3.9910 14 1 7.5924 0.6219 3.6401 15 6 6.7286 1.5139 5.4454 16 6 6.6082 0.2041 6.2637 17 7 5.6313 -0.6150 5.5232 18 6 4.8615 -1.6146 6.0556 19 1 4.1727 -2.1589 5.4266 20 6 4.9663 -1.9280 7.4039 21 7 5.8058 -1.2648 8.1704 22 14 3.9167 -3.2920 8.1300 23 1 3.0619 -3.8783 7.0665 24 1 4.7967 -4.3461 8.6956 25 1 3.0565 -2.7357 9.2051 26 6 5.6211 -0.1815 4.1185 27 6 5.8747 1.4773 1.6578 28 6 4.2343 -0.0507 -0.0045 29 6 3.4741 -1.2039 0.0013 30 7 2.1570 -1.1465 0.0005 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6494 2.1378 -0.0004 35 1 7.2910 3.4897 0.2270 36 1 5.8375 4.5029 0.0318 37 1 7.2323 5.1501 2.0287 38 1 5.5739 4.6673 2.4608 39 1 7.2539 3.6249 3.9736 40 1 8.0277 2.8546 2.5682 41 1 7.6911 1.9954 5.6182 42 1 5.9071 2.1933 5.6722 43 1 6.2413 0.4167 7.2679 44 1 7.5708 -0.3048 6.3121 45 1 5.8787 -1.4835 9.1126 46 1 4.6229 0.1582 3.8425 47 1 5.9243 -1.0050 3.4718 48 1 5.0896 0.7220 1.6926 49 1 6.8023 1.0243 1.3078 50 1 5.3129 -0.1052 -0.0087 51 1 3.9653 -2.1657 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961246102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:32 Heat of formation + Delta-G solvation = 22.393269 kcal Electronic energy + Delta-G solvation = -31055.461743 eV Core-core repulsion = 27148.042060 eV Total energy + Delta-G solvation = -3907.419683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.10295 -39.72575 -38.38250 -36.66575 -33.98270 -33.40091 -32.67116 -32.06176 -31.08440 -29.10090 -27.87970 -27.20169 -26.04838 -24.86718 -24.03223 -22.84032 -22.60802 -20.95504 -20.05596 -19.49772 -19.32115 -17.64282 -16.92352 -16.67797 -16.33113 -16.01970 -15.46359 -15.09487 -14.90126 -14.62775 -14.46675 -14.42824 -13.96192 -13.78478 -13.57209 -13.41964 -13.13851 -13.08549 -12.69331 -12.50316 -12.43489 -12.26735 -11.89584 -11.86302 -11.62958 -11.25023 -11.16725 -11.02786 -10.87664 -10.76879 -10.71882 -10.49180 -10.15132 -10.06912 -9.96455 -9.83879 -9.78163 -9.53479 -9.48906 -9.08393 -8.79523 -8.65331 -6.83129 -5.65703 -3.07128 0.64414 0.90416 2.49500 2.74397 3.39193 3.45232 3.47410 3.59183 4.08219 4.11402 4.47532 4.55538 4.59068 4.73333 4.77636 4.81306 4.84895 4.88911 5.11983 5.16823 5.26162 5.29369 5.37379 5.41576 5.44473 5.47341 5.51947 5.57789 5.63399 5.63878 5.68201 5.75443 5.76408 5.82876 5.88084 5.94482 5.98607 6.03322 6.15921 6.28823 6.35409 6.38174 6.44661 6.56930 6.59717 6.73123 6.93296 7.12507 7.51905 7.63576 7.78730 7.85701 7.86208 8.36447 9.22266 9.83430 10.48200 11.38167 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008851 B = 0.003961 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.834055 B = 7067.348545 C = 9642.205734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.128 3.872 3 C -0.123 4.123 4 C -0.078 4.078 5 C 0.563 3.437 6 O -0.536 6.536 7 N -0.600 5.600 8 C 0.111 3.889 9 C -0.134 4.134 10 C -0.114 4.114 11 C -0.087 4.087 12 H 0.075 0.925 13 C -0.093 4.093 14 H 0.072 0.928 15 C -0.136 4.136 16 C 0.151 3.849 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.142 3.858 27 C 0.098 3.902 28 C -0.150 4.150 29 C 0.108 3.892 30 N -0.470 5.470 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.011 0.989 45 H 0.251 0.749 46 H 0.019 0.981 47 H 0.018 0.982 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.143 0.857 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 8.415 -16.697 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.010 4.010 3 C -0.143 4.143 4 C -0.089 4.089 5 C 0.351 3.649 6 O -0.413 6.413 7 N -0.333 5.333 8 C -0.011 4.011 9 C -0.172 4.172 10 C -0.152 4.152 11 C -0.107 4.107 12 H 0.093 0.907 13 C -0.113 4.113 14 H 0.090 0.910 15 C -0.174 4.174 16 C 0.026 3.974 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.016 3.984 27 C -0.024 4.024 28 C -0.171 4.171 29 C -0.049 4.049 30 N -0.180 5.180 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.159 0.841 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.029 0.971 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.114 0.886 49 H 0.092 0.908 50 H 0.161 0.839 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.975 8.045 -16.865 18.711 hybrid contribution 0.225 -0.048 0.500 0.551 sum -0.750 7.997 -16.365 18.230 Atomic orbital electron populations 1.20741 0.88317 1.03934 1.03190 1.21295 0.97341 0.87770 0.94617 1.22004 0.92955 0.99999 0.99363 1.20239 0.94460 0.93645 1.00581 1.18277 0.80129 0.86928 0.79597 1.90765 1.68402 1.39081 1.43087 1.48035 1.23957 1.19954 1.41303 1.21667 0.94224 0.87173 0.97995 1.21925 1.01974 0.98449 0.94873 1.21587 0.98286 0.95150 1.00165 1.21522 0.99688 0.95754 0.93721 0.90658 1.22168 0.98804 0.94856 0.95460 0.90993 1.23022 0.99908 0.99989 0.94515 1.21919 0.91677 0.86202 0.97576 1.44500 1.45737 1.39824 1.02875 1.19121 1.14922 1.08440 0.92453 0.90553 1.24770 0.99618 0.99968 0.96281 1.69811 1.39155 1.42713 1.05412 0.86035 0.79471 0.81253 0.79001 1.20493 1.21739 1.21752 1.21304 0.95427 0.93377 0.88290 1.22326 1.01602 0.89322 0.89116 1.22418 1.01909 0.92362 1.00366 1.22766 0.89108 0.98495 0.94544 1.67412 1.10332 1.29373 1.10925 0.90252 0.90041 0.90465 0.84064 0.91216 0.89035 0.90660 0.91475 0.90974 0.91775 0.92508 0.92300 0.87761 0.97144 0.93838 0.96362 0.96455 0.88555 0.90833 0.83895 0.81855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 36.00 0.37 -0.57 16 2 C 0.13 1.53 6.78 -82.63 -0.56 0.97 16 3 C -0.12 -1.50 9.40 -39.02 -0.37 -1.87 16 4 C -0.08 -0.99 5.15 -104.65 -0.54 -1.53 16 5 C 0.56 7.61 7.38 -12.19 -0.09 7.52 16 6 O -0.54 -8.62 16.37 5.35 0.09 -8.53 16 7 N -0.60 -7.01 2.97 -173.77 -0.52 -7.52 16 8 C 0.11 1.12 6.44 -3.71 -0.02 1.09 16 9 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 10 C -0.11 -1.20 5.02 -26.69 -0.13 -1.33 16 11 C -0.09 -1.11 1.71 -90.50 -0.15 -1.26 16 12 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 13 C -0.09 -1.47 2.49 -88.78 -0.22 -1.69 16 14 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.14 -2.43 5.62 -24.58 -0.14 -2.56 16 16 C 0.15 3.59 5.89 -2.53 -0.01 3.57 16 17 N -0.60 -15.19 3.39 -170.08 -0.58 -15.76 16 18 C -0.22 -6.13 10.27 -15.05 -0.15 -6.28 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 22 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.14 2.81 5.96 -3.06 -0.02 2.79 16 27 C 0.10 1.12 3.90 -3.71 -0.01 1.10 16 28 C -0.15 -1.67 7.50 -39.03 -0.29 -1.97 16 29 C 0.11 1.24 11.17 -17.59 -0.20 1.04 16 30 N -0.47 -6.17 10.25 -9.52 -0.10 -6.27 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.00 7.00 -51.93 -0.36 0.63 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.79 7.38 -51.93 -0.38 0.40 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 42 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 43 H 0.10 2.82 5.87 -51.93 -0.31 2.52 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.02 0.37 7.55 -51.93 -0.39 -0.02 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 1.18 3.94 -51.93 -0.20 0.98 16 49 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 50 H 0.14 1.31 6.64 -52.48 -0.35 0.96 16 51 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -32.84 394.73 -10.72 -43.57 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.29 Total: 0.50 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.81 Total: -2.79 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.63 Total: -55.73 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.53 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.84 -10.72 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961246102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.959 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds