Wall clock time and date at job start Wed Apr 1 2020 02:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38174 * 119.55142 * 2 1 4 4 C 1.39803 * 118.99833 * 179.97438 * 3 2 1 5 5 C 1.48145 * 120.92007 * 179.97438 * 4 3 2 6 6 O 1.21519 * 120.00248 * 320.41925 * 5 4 3 7 7 N 1.34776 * 120.00025 * 140.42108 * 5 4 3 8 8 C 1.46923 * 120.63453 * 174.18059 * 7 5 4 9 9 C 1.53196 * 108.77535 * 126.36780 * 8 7 5 10 10 C 1.53039 * 109.31055 * 54.63857 * 9 8 7 11 11 C 1.53041 * 109.53676 * 298.63176 * 10 9 8 12 12 H 1.08994 * 109.50060 * 301.41236 * 11 10 9 13 13 C 1.53005 * 109.49368 * 181.31605 * 11 10 9 14 14 H 1.08998 * 110.64029 * 301.85161 * 13 11 10 15 15 C 1.55160 * 110.71923 * 65.19130 * 13 11 10 16 16 C 1.54907 * 101.58158 * 153.86413 * 15 13 11 17 17 N 1.47428 * 104.82856 * 322.98564 * 16 15 13 18 18 C 1.36942 * 125.64703 * 204.09387 * 17 16 15 19 19 H 1.07999 * 120.00090 * 180.02562 * 18 17 16 20 20 C 1.38819 * 119.99733 * 0.04557 * 18 17 16 21 21 N 1.31613 * 120.00195 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99735 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47193 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47373 * 119.99681 * 22 20 18 25 25 H 1.48504 * 109.46817 * 240.00024 * 22 20 18 26 26 C 1.47016 * 108.70704 * 24.13197 * 17 16 15 27 27 C 1.46926 * 120.62962 * 354.15803 * 7 5 4 28 28 C 1.39831 * 118.15560 * 0.26032 * 4 3 2 29 29 C 1.38127 * 119.00155 * 359.47201 * 28 4 3 30 30 N 1.31797 * 119.55304 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.46967 * 89.99498 * 1 2 3 32 32 H 1.09004 * 109.47293 * 209.99820 * 1 2 3 33 33 H 1.09005 * 109.46985 * 329.99749 * 1 2 3 34 34 H 1.07997 * 120.50373 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.59075 * 246.15928 * 8 7 5 36 36 H 1.09004 * 109.58334 * 6.58365 * 8 7 5 37 37 H 1.09002 * 109.49343 * 174.58750 * 9 8 7 38 38 H 1.08997 * 109.49966 * 294.68648 * 9 8 7 39 39 H 1.09001 * 109.45988 * 178.61427 * 10 9 8 40 40 H 1.08994 * 109.45996 * 58.65441 * 10 9 8 41 41 H 1.08998 * 110.99752 * 271.93541 * 15 13 11 42 42 H 1.08998 * 111.00219 * 35.78657 * 15 13 11 43 43 H 1.09000 * 110.36296 * 204.15123 * 16 15 13 44 44 H 1.08991 * 110.46157 * 81.87432 * 16 15 13 45 45 H 0.97001 * 120.00415 * 179.97438 * 21 20 18 46 46 H 1.08990 * 109.88636 * 239.52407 * 26 17 16 47 47 H 1.09004 * 110.01402 * 118.42079 * 26 17 16 48 48 H 1.09000 * 109.58593 * 353.42014 * 27 7 5 49 49 H 1.09004 * 109.58803 * 113.69895 * 27 7 5 50 50 H 1.08003 * 120.50017 * 179.72616 * 28 4 3 51 51 H 1.08004 * 119.55369 * 180.27769 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 0.0005 5 6 4.3599 2.4520 0.0000 6 8 3.9856 3.3933 -0.6713 7 7 5.4787 2.5576 0.7440 8 6 6.3253 3.7552 0.6572 9 6 6.5286 4.3186 2.0672 10 6 7.0851 3.2200 2.9758 11 6 6.0830 2.0662 3.0565 12 1 5.1325 2.4360 3.4409 13 6 6.6257 0.9830 3.9910 14 1 7.5924 0.6219 3.6401 15 6 6.7286 1.5139 5.4454 16 6 6.6082 0.2041 6.2637 17 7 5.6313 -0.6150 5.5232 18 6 4.8615 -1.6146 6.0556 19 1 4.1727 -2.1589 5.4266 20 6 4.9663 -1.9280 7.4039 21 7 5.8058 -1.2648 8.1704 22 14 3.9167 -3.2920 8.1300 23 1 3.0619 -3.8783 7.0665 24 1 4.7967 -4.3461 8.6956 25 1 3.0565 -2.7357 9.2051 26 6 5.6211 -0.1815 4.1185 27 6 5.8747 1.4773 1.6578 28 6 4.2343 -0.0507 -0.0045 29 6 3.4741 -1.2039 0.0013 30 7 2.1570 -1.1465 0.0005 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6494 2.1378 -0.0004 35 1 7.2910 3.4897 0.2270 36 1 5.8375 4.5029 0.0318 37 1 7.2323 5.1501 2.0287 38 1 5.5739 4.6673 2.4608 39 1 7.2539 3.6249 3.9736 40 1 8.0277 2.8546 2.5682 41 1 7.6911 1.9954 5.6182 42 1 5.9071 2.1933 5.6722 43 1 6.2413 0.4167 7.2679 44 1 7.5708 -0.3048 6.3121 45 1 5.8787 -1.4835 9.1126 46 1 4.6229 0.1582 3.8425 47 1 5.9243 -1.0050 3.4718 48 1 5.0896 0.7220 1.6926 49 1 6.8023 1.0243 1.3078 50 1 5.3129 -0.1052 -0.0087 51 1 3.9653 -2.1657 0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961246102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:31 Heat of formation + Delta-G solvation = 3.721448 kcal Electronic energy + Delta-G solvation = -31056.271414 eV Core-core repulsion = 27148.042060 eV Total energy + Delta-G solvation = -3908.229354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.04586 -40.68002 -39.66518 -37.99972 -35.16436 -34.70210 -33.55911 -33.26818 -32.38376 -30.80785 -28.71824 -28.61245 -27.05716 -26.54496 -25.08089 -23.75519 -23.71956 -22.10721 -21.67039 -20.77565 -20.29571 -18.91710 -18.47611 -17.73679 -17.27229 -16.92000 -16.88910 -16.44556 -16.10468 -15.79119 -15.60544 -15.48450 -15.29923 -14.92588 -14.48087 -14.41396 -14.28454 -14.13130 -13.99316 -13.68621 -13.46211 -13.36875 -13.18044 -13.10694 -12.91273 -12.77108 -12.74446 -12.31946 -12.19352 -12.01702 -11.90825 -11.82115 -11.66403 -11.57015 -11.29375 -11.25255 -11.10497 -10.89072 -10.73363 -10.47205 -9.94525 -9.73597 -8.85391 -7.76670 -5.20020 -0.28807 0.02327 1.45752 1.46131 1.49837 1.56410 1.82523 2.49579 2.69270 3.14200 3.31374 3.33120 3.58997 3.68139 3.73176 3.81487 3.87950 3.97291 3.98725 4.05814 4.14873 4.23481 4.30319 4.40097 4.44584 4.50401 4.56334 4.59490 4.66988 4.72071 4.75189 4.75943 4.83226 4.86676 4.90461 4.92232 4.94996 5.04420 5.07961 5.12433 5.14234 5.19567 5.35442 5.40675 5.46155 5.48188 5.56215 5.59887 5.70998 5.85776 6.15828 6.33900 6.87461 6.89767 7.13208 7.81829 8.44874 9.25045 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008851 B = 0.003961 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.834055 B = 7067.348545 C = 9642.205734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.117 3.883 3 C -0.135 4.135 4 C -0.093 4.093 5 C 0.561 3.439 6 O -0.569 6.569 7 N -0.594 5.594 8 C 0.107 3.893 9 C -0.127 4.127 10 C -0.110 4.110 11 C -0.078 4.078 12 H 0.052 0.948 13 C -0.074 4.074 14 H 0.093 0.907 15 C -0.120 4.120 16 C 0.151 3.849 17 N -0.627 5.627 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.066 4.066 21 N -0.948 5.948 22 Si 0.974 3.026 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.138 3.862 27 C 0.101 3.899 28 C -0.145 4.145 29 C 0.098 3.902 30 N -0.495 5.495 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.066 0.934 44 H -0.012 1.012 45 H 0.246 0.754 46 H 0.012 0.988 47 H 0.026 0.974 48 H 0.086 0.914 49 H 0.102 0.898 50 H 0.165 0.835 51 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 8.748 -18.132 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.020 4.020 3 C -0.156 4.156 4 C -0.104 4.104 5 C 0.349 3.651 6 O -0.449 6.449 7 N -0.325 5.325 8 C -0.014 4.014 9 C -0.165 4.165 10 C -0.148 4.148 11 C -0.098 4.098 12 H 0.070 0.930 13 C -0.094 4.094 14 H 0.111 0.889 15 C -0.158 4.158 16 C 0.026 3.974 17 N -0.353 5.353 18 C -0.364 4.364 19 H 0.094 0.906 20 C -0.258 4.258 21 N -0.598 5.598 22 Si 0.802 3.198 23 H -0.193 1.193 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.013 3.987 27 C -0.021 4.021 28 C -0.165 4.165 29 C -0.058 4.058 30 N -0.205 5.205 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.163 0.837 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.006 0.994 45 H 0.056 0.944 46 H 0.030 0.970 47 H 0.044 0.956 48 H 0.104 0.896 49 H 0.120 0.880 50 H 0.183 0.817 51 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 0.207 8.387 -18.320 20.149 hybrid contribution -0.138 -0.158 0.949 0.972 sum 0.069 8.229 -17.370 19.221 Atomic orbital electron populations 1.20821 0.86538 1.04392 1.04295 1.21714 0.98681 0.87453 0.94194 1.22156 0.93230 1.00379 0.99790 1.20362 0.94740 0.93988 1.01332 1.18423 0.80416 0.86787 0.79468 1.90743 1.69283 1.40191 1.44708 1.48087 1.23441 1.20522 1.40441 1.21856 0.94817 0.86355 0.98360 1.21877 1.01748 0.98846 0.93995 1.21572 0.98299 0.94294 1.00594 1.21377 0.99225 0.95604 0.93586 0.92987 1.22063 0.98656 0.93909 0.94753 0.88908 1.22841 1.01322 0.96867 0.94816 1.21723 0.90019 0.88686 0.96983 1.44824 1.45540 1.39599 1.05366 1.19445 1.15103 1.09041 0.92851 0.90600 1.25557 1.01101 1.02370 0.96777 1.70066 1.40532 1.43986 1.05203 0.85074 0.77944 0.78585 0.78162 1.19319 1.21755 1.21927 1.21499 0.96436 0.95122 0.85605 1.22325 1.02528 0.88930 0.88321 1.22612 1.02931 0.91544 0.99411 1.23221 0.88902 0.99696 0.93979 1.67461 1.11284 1.29976 1.11801 0.88756 0.90370 0.89162 0.83690 0.88630 0.90111 0.88128 0.93214 0.91088 0.89652 0.89542 0.92814 0.91610 0.99368 0.94445 0.97006 0.95582 0.89569 0.88046 0.81737 0.79658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 10.17 71.24 0.72 -1.06 16 2 C 0.12 2.78 6.78 42.55 0.29 3.07 16 3 C -0.13 -3.29 9.40 22.63 0.21 -3.08 16 4 C -0.09 -2.29 5.15 -19.88 -0.10 -2.39 16 5 C 0.56 14.63 7.38 86.88 0.64 15.27 16 6 O -0.57 -18.16 16.37 -3.77 -0.06 -18.23 16 7 N -0.59 -12.53 2.97 -821.97 -2.44 -14.97 16 8 C 0.11 1.84 6.44 86.36 0.56 2.40 16 9 C -0.13 -1.99 6.08 30.67 0.19 -1.81 16 10 C -0.11 -1.89 5.02 30.62 0.15 -1.73 16 11 C -0.08 -1.78 1.71 -10.72 -0.02 -1.80 16 12 H 0.05 1.45 8.13 -2.39 -0.02 1.43 16 13 C -0.07 -2.15 2.49 -9.60 -0.02 -2.17 16 14 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 15 C -0.12 -4.11 5.62 31.99 0.18 -3.93 16 16 C 0.15 7.27 5.89 86.85 0.51 7.78 16 17 N -0.63 -31.82 3.39 -692.00 -2.35 -34.17 16 18 C -0.24 -13.22 10.27 84.03 0.86 -12.35 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 21 N -0.95 -56.49 10.09 21.65 0.22 -56.27 16 22 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 26 C 0.14 5.33 5.96 86.73 0.52 5.84 16 27 C 0.10 1.99 3.90 86.36 0.34 2.33 16 28 C -0.14 -3.01 7.50 22.63 0.17 -2.84 16 29 C 0.10 2.16 11.17 84.67 0.95 3.10 16 30 N -0.49 -12.73 10.25 -184.04 -1.89 -14.62 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.29 8.08 -2.38 -0.02 1.27 16 34 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.61 7.00 -2.38 -0.02 1.60 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.28 7.38 -2.39 -0.02 1.26 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 42 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 43 H 0.07 3.69 5.87 -2.39 -0.01 3.67 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.01 0.48 7.55 -2.39 -0.02 0.46 16 47 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.09 1.93 3.94 -2.39 -0.01 1.92 16 49 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 50 H 0.17 2.56 6.64 -2.91 -0.02 2.54 16 51 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -73.73 394.73 3.03 -70.70 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.91 Total: 16.25 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.61 Total: 3.35 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.46 Total: -120.04 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.06 Total: -18.23 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.73 3.03 -70.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961246102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.419 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds