Wall clock time and date at job start Wed Apr 1 2020 02:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 125.57245 * 2 1 4 4 C 1.46687 * 106.33382 * 180.26095 * 3 2 1 5 5 C 1.47264 * 126.93870 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99596 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00394 * 0.04588 * 5 4 3 8 8 C 1.46500 * 119.99925 * 179.97438 * 7 5 4 9 9 H 1.08999 * 115.51865 * 9.41863 * 8 7 5 10 10 C 1.53001 * 117.43908 * 223.99923 * 8 7 5 11 11 H 1.08997 * 119.54263 * 4.12691 * 10 8 7 12 12 C 1.54442 * 118.08901 * 160.74641 * 10 8 7 13 13 N 1.48144 * 104.55951 * 87.29448 * 12 10 8 14 14 C 1.36938 * 127.83751 * 140.40322 * 13 12 10 15 15 H 1.07998 * 119.99570 * 195.57133 * 14 13 12 16 16 C 1.38813 * 120.00001 * 15.57303 * 14 13 12 17 17 N 1.31623 * 120.00131 * 9.09634 * 16 14 13 18 18 Si 1.86797 * 120.00044 * 189.10094 * 16 14 13 19 19 H 1.48506 * 109.47375 * 59.99466 * 18 16 14 20 20 H 1.48501 * 109.47223 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46980 * 300.00115 * 18 16 14 22 22 C 1.48150 * 104.32383 * 320.39920 * 13 12 10 23 23 C 1.53001 * 117.44048 * 154.83181 * 8 7 5 24 24 H 1.09005 * 119.54351 * 354.28872 * 23 8 7 25 25 C 1.36767 * 106.11448 * 0.02562 * 4 3 2 26 26 C 1.50705 * 125.80055 * 180.02562 * 25 4 3 27 27 N 1.34650 * 108.40003 * 359.97438 * 25 4 3 28 28 C 1.46504 * 124.85507 * 180.02562 * 27 25 4 29 29 C 1.52997 * 109.47171 * 270.03110 * 28 27 25 30 30 C 1.52999 * 117.49879 * 243.61711 * 29 28 27 31 31 C 1.53002 * 60.00056 * 252.51259 * 30 29 28 32 32 H 1.09005 * 109.46975 * 269.68985 * 1 2 3 33 33 H 1.08992 * 109.47496 * 29.69531 * 1 2 3 34 34 H 1.09002 * 109.47419 * 149.69707 * 1 2 3 35 35 H 1.08006 * 126.83008 * 0.24282 * 3 2 1 36 36 H 0.96999 * 119.99718 * 359.97438 * 7 5 4 37 37 H 1.09002 * 110.44232 * 328.52337 * 12 10 8 38 38 H 1.08998 * 110.42066 * 206.05863 * 12 10 8 39 39 H 0.96995 * 119.99848 * 180.02562 * 17 16 14 40 40 H 1.09001 * 110.40991 * 280.80319 * 22 13 12 41 41 H 1.09000 * 110.40401 * 158.36918 * 22 13 12 42 42 H 1.08993 * 109.47043 * 269.95773 * 26 25 4 43 43 H 1.09001 * 109.46972 * 29.95456 * 26 25 4 44 44 H 1.08996 * 109.47079 * 149.95122 * 26 25 4 45 45 H 1.09002 * 109.46649 * 30.03147 * 28 27 25 46 46 H 1.08996 * 109.47151 * 150.02888 * 28 27 25 47 47 H 1.09006 * 115.55052 * 29.32957 * 29 28 27 48 48 H 1.09002 * 117.49719 * 0.02562 * 30 29 28 49 49 H 1.09001 * 117.49827 * 145.02009 * 30 29 28 50 50 H 1.09005 * 117.49376 * 252.50956 * 31 30 29 51 51 H 1.08994 * 117.52042 * 107.48298 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6105 -0.0064 5 6 4.8977 1.4303 -0.0093 6 8 5.9891 0.8936 -0.0152 7 7 4.8079 2.7750 -0.0050 8 6 6.0251 3.5904 -0.0073 9 1 6.9546 3.0460 -0.1735 10 6 6.0708 4.7915 0.9393 11 1 5.2427 4.9663 1.6261 12 6 7.4517 5.3845 1.2954 13 7 7.7229 6.3680 0.2213 14 6 8.2996 7.6043 0.3403 15 1 8.2147 8.3195 -0.4645 16 6 8.9933 7.9383 1.4954 17 7 9.2515 7.0157 2.3980 18 14 9.5601 9.6970 1.7690 19 1 8.3814 10.6003 1.7844 20 1 10.2724 9.7911 3.0686 21 1 10.4765 10.0981 0.6714 22 6 7.2289 5.7105 -1.0110 23 6 5.9246 5.0055 -0.5803 24 1 4.9959 5.3309 -1.0490 25 6 3.5997 -0.7551 -0.0103 26 6 4.7721 -1.7020 -0.0169 27 7 2.3008 -1.1098 -0.0062 28 6 1.8099 -2.4902 -0.0080 29 6 1.6341 -2.9671 -1.4511 30 6 0.2176 -3.3161 -1.9122 31 6 1.2388 -4.4291 -1.6687 32 1 -0.3633 -0.0056 1.0277 33 1 -0.3634 0.8926 -0.5090 34 1 -0.3634 -0.8873 -0.5185 35 1 1.9628 2.1234 0.0037 36 1 3.9374 3.2029 -0.0004 37 1 8.2123 4.6038 1.2970 38 1 7.4136 5.8812 2.2649 39 1 9.7359 7.2492 3.2052 40 1 7.9548 4.9807 -1.3696 41 1 7.0228 6.4533 -1.7816 42 1 5.0511 -1.9277 -1.0460 43 1 5.6158 -1.2391 0.4951 44 1 4.4975 -2.6238 0.4957 45 1 2.5284 -3.1320 0.5018 46 1 0.8514 -2.5356 0.5090 47 1 2.3039 -2.5128 -2.1813 48 1 -0.5891 -3.2055 -1.1875 49 1 -0.0449 -3.0912 -2.9459 50 1 1.6482 -4.9364 -2.5424 51 1 1.1044 -5.0512 -0.7839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962295187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:25 Heat of formation + Delta-G solvation = 91.915114 kcal Electronic energy + Delta-G solvation = -29216.389078 eV Core-core repulsion = 25311.984088 eV Total energy + Delta-G solvation = -3904.404990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.72215 -39.39119 -38.14979 -37.72200 -34.32969 -33.06267 -32.69395 -32.23799 -30.16712 -29.30922 -27.27645 -27.04536 -25.63868 -24.89639 -23.00667 -22.64002 -21.45895 -21.23435 -20.27426 -19.94883 -19.17712 -18.74071 -17.11375 -16.79807 -16.21224 -16.04354 -15.82999 -15.46465 -14.69260 -14.59036 -14.42837 -14.00816 -13.82960 -13.53847 -13.38491 -13.33945 -13.07352 -12.97179 -12.68766 -12.66643 -12.63749 -12.44442 -12.11017 -12.07660 -11.80717 -11.55048 -11.43825 -11.34040 -11.02352 -10.92216 -10.76557 -10.64573 -10.29988 -10.14544 -10.05029 -9.66483 -9.57003 -9.07131 -8.78409 -8.65671 -8.22999 -8.00381 -6.79788 -5.73197 -3.07448 1.72256 2.22046 2.46340 3.15632 3.42130 3.46831 3.48652 3.51428 3.66548 4.02956 4.19201 4.28588 4.47052 4.47146 4.54004 4.56943 4.63970 4.72110 4.90087 4.93803 5.04642 5.12177 5.20426 5.22801 5.29112 5.29186 5.43765 5.46505 5.49056 5.51245 5.53196 5.55333 5.60910 5.67140 5.74155 5.90663 5.93994 6.00045 6.11914 6.29599 6.44347 6.62888 6.68142 6.77300 6.92317 6.98754 7.03951 7.08824 7.45404 7.61284 7.78284 7.88987 8.27587 8.60922 9.17224 9.80027 10.57952 11.41039 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030416 B = 0.001821 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.339698 B =15372.472448 C =15686.110882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.013 3.987 3 C -0.166 4.166 4 C -0.229 4.229 5 C 0.593 3.407 6 O -0.550 6.550 7 N -0.694 5.694 8 C 0.101 3.899 9 H 0.131 0.869 10 C -0.180 4.180 11 H 0.100 0.900 12 C 0.186 3.814 13 N -0.594 5.594 14 C -0.227 4.227 15 H 0.076 0.924 16 C -0.006 4.006 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.156 3.844 23 C -0.185 4.185 24 H 0.102 0.898 25 C 0.107 3.893 26 C -0.093 4.093 27 N -0.436 5.436 28 C 0.131 3.869 29 C -0.175 4.175 30 C -0.175 4.175 31 C -0.170 4.170 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.143 0.857 36 H 0.397 0.603 37 H 0.026 0.974 38 H 0.090 0.910 39 H 0.255 0.745 40 H 0.027 0.973 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.099 0.901 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.201 -23.121 -6.126 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.190 4.190 4 C -0.239 4.239 5 C 0.382 3.618 6 O -0.430 6.430 7 N -0.341 5.341 8 C -0.005 4.005 9 H 0.148 0.852 10 C -0.202 4.202 11 H 0.118 0.882 12 C 0.060 3.940 13 N -0.317 5.317 14 C -0.355 4.355 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.561 5.561 18 Si 0.743 3.257 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.029 3.971 23 C -0.206 4.206 24 H 0.120 0.880 25 C -0.009 4.009 26 C -0.150 4.150 27 N -0.113 5.113 28 C 0.009 3.991 29 C -0.194 4.194 30 C -0.212 4.212 31 C -0.207 4.207 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.161 0.839 36 H 0.231 0.769 37 H 0.044 0.956 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.130 0.870 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.117 0.883 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.390 -23.637 -5.958 32.430 hybrid contribution -0.398 1.203 0.141 1.275 sum -21.787 -22.434 -5.818 31.809 Atomic orbital electron populations 1.20328 0.88079 1.03286 1.02453 1.20130 0.93399 0.85451 1.10487 1.21774 0.90955 0.97561 1.08679 1.20096 0.92846 0.92160 1.18788 1.17282 0.87685 0.81432 0.75363 1.90728 1.28663 1.72294 1.51276 1.45129 1.08717 1.05563 1.74705 1.21777 0.88980 0.86147 1.03594 0.85172 1.24709 1.03008 0.99887 0.92552 0.88157 1.21053 0.87543 0.90631 0.94776 1.45173 1.69901 1.15741 1.00887 1.18941 1.26188 0.87999 1.02368 0.90629 1.24903 0.99110 0.98057 0.98259 1.69897 1.44140 1.31309 1.10734 0.86191 0.78320 0.84017 0.77161 1.21143 1.21573 1.21005 1.21118 0.90868 0.94318 0.90772 1.24254 1.01103 0.96843 0.98447 0.87992 1.20254 0.84552 0.94023 1.02085 1.20569 0.94794 0.96332 1.03312 1.43498 1.05004 1.05789 1.56976 1.21425 1.01354 0.80622 0.95688 1.22677 0.99972 0.99326 0.97435 1.23083 0.92120 1.03150 1.02847 1.22978 1.03272 0.90683 1.03779 0.91237 0.90109 0.91752 0.83888 0.76908 0.95588 0.89193 0.93513 0.95557 0.93081 0.90593 0.87892 0.92158 0.88633 0.89022 0.86987 0.88523 0.88467 0.88256 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 9.80 36.00 0.35 -0.15 16 2 C 0.01 0.12 6.85 -81.86 -0.56 -0.44 16 3 C -0.17 -1.85 10.45 -37.50 -0.39 -2.24 16 4 C -0.23 -3.14 6.29 -103.35 -0.65 -3.79 16 5 C 0.59 9.81 7.81 -12.59 -0.10 9.71 16 6 O -0.55 -10.74 14.38 5.25 0.08 -10.66 16 7 N -0.69 -10.79 5.56 -54.93 -0.31 -11.10 16 8 C 0.10 1.85 5.98 -67.93 -0.41 1.45 16 9 H 0.13 2.68 7.40 -51.93 -0.38 2.29 16 10 C -0.18 -3.64 7.05 -89.26 -0.63 -4.27 16 11 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 12 C 0.19 4.68 5.70 -2.38 -0.01 4.67 16 13 N -0.59 -15.71 3.38 -168.83 -0.57 -16.28 16 14 C -0.23 -6.45 10.35 -15.06 -0.16 -6.61 16 15 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 16 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 17 N -0.91 -27.40 10.86 55.49 0.60 -26.80 16 18 Si 0.91 22.29 29.56 -169.99 -5.03 17.27 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.16 3.42 7.04 -2.41 -0.02 3.40 16 23 C -0.19 -3.47 7.05 -89.29 -0.63 -4.10 16 24 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 25 C 0.11 1.27 6.89 -81.89 -0.56 0.70 16 26 C -0.09 -0.98 9.52 36.01 0.34 -0.63 16 27 N -0.44 -4.03 2.69 -107.96 -0.29 -4.32 16 28 C 0.13 0.78 5.65 -4.04 -0.02 0.76 16 29 C -0.18 -0.98 6.01 -90.62 -0.54 -1.52 16 30 C -0.18 -0.76 10.00 -26.73 -0.27 -1.02 16 31 C -0.17 -0.69 10.25 -26.73 -0.27 -0.96 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.31 7.43 -51.93 -0.39 -0.07 16 35 H 0.14 1.34 7.70 -52.48 -0.40 0.93 16 36 H 0.40 5.14 7.95 -40.82 -0.32 4.81 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.50 6.51 -51.93 -0.34 2.16 16 39 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 1.34 6.47 -51.93 -0.34 1.00 16 44 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 45 H 0.10 0.49 6.88 -51.93 -0.36 0.13 16 46 H 0.09 0.41 7.26 -51.93 -0.38 0.04 16 47 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.33 8.03 -51.93 -0.42 -0.09 16 49 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 412.25 15.07 6.21 6.21 Total: -1.00 -33.99 412.25 -12.23 -46.22 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.30 Total: 4.79 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -4.62 Total: -5.33 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.56 Total: -58.50 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.99 -12.23 -46.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962295187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.135 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds