Wall clock time and date at job start Wed Apr 1 2020 02:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34485 * 125.57245 * 2 1 4 4 C 1.46687 * 106.33382 * 180.26095 * 3 2 1 5 5 C 1.47264 * 126.93870 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99596 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00394 * 0.04588 * 5 4 3 8 8 C 1.46500 * 119.99925 * 179.97438 * 7 5 4 9 9 H 1.08999 * 115.51865 * 9.41863 * 8 7 5 10 10 C 1.53001 * 117.43908 * 223.99923 * 8 7 5 11 11 H 1.08997 * 119.54263 * 4.12691 * 10 8 7 12 12 C 1.54442 * 118.08901 * 160.74641 * 10 8 7 13 13 N 1.48144 * 104.55951 * 87.29448 * 12 10 8 14 14 C 1.36938 * 127.83751 * 140.40322 * 13 12 10 15 15 H 1.07998 * 119.99570 * 195.57133 * 14 13 12 16 16 C 1.38813 * 120.00001 * 15.57303 * 14 13 12 17 17 N 1.31623 * 120.00131 * 9.09634 * 16 14 13 18 18 Si 1.86797 * 120.00044 * 189.10094 * 16 14 13 19 19 H 1.48506 * 109.47375 * 59.99466 * 18 16 14 20 20 H 1.48501 * 109.47223 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46980 * 300.00115 * 18 16 14 22 22 C 1.48150 * 104.32383 * 320.39920 * 13 12 10 23 23 C 1.53001 * 117.44048 * 154.83181 * 8 7 5 24 24 H 1.09005 * 119.54351 * 354.28872 * 23 8 7 25 25 C 1.36767 * 106.11448 * 0.02562 * 4 3 2 26 26 C 1.50705 * 125.80055 * 180.02562 * 25 4 3 27 27 N 1.34650 * 108.40003 * 359.97438 * 25 4 3 28 28 C 1.46504 * 124.85507 * 180.02562 * 27 25 4 29 29 C 1.52997 * 109.47171 * 270.03110 * 28 27 25 30 30 C 1.52999 * 117.49879 * 243.61711 * 29 28 27 31 31 C 1.53002 * 60.00056 * 252.51259 * 30 29 28 32 32 H 1.09005 * 109.46975 * 269.68985 * 1 2 3 33 33 H 1.08992 * 109.47496 * 29.69531 * 1 2 3 34 34 H 1.09002 * 109.47419 * 149.69707 * 1 2 3 35 35 H 1.08006 * 126.83008 * 0.24282 * 3 2 1 36 36 H 0.96999 * 119.99718 * 359.97438 * 7 5 4 37 37 H 1.09002 * 110.44232 * 328.52337 * 12 10 8 38 38 H 1.08998 * 110.42066 * 206.05863 * 12 10 8 39 39 H 0.96995 * 119.99848 * 180.02562 * 17 16 14 40 40 H 1.09001 * 110.40991 * 280.80319 * 22 13 12 41 41 H 1.09000 * 110.40401 * 158.36918 * 22 13 12 42 42 H 1.08993 * 109.47043 * 269.95773 * 26 25 4 43 43 H 1.09001 * 109.46972 * 29.95456 * 26 25 4 44 44 H 1.08996 * 109.47079 * 149.95122 * 26 25 4 45 45 H 1.09002 * 109.46649 * 30.03147 * 28 27 25 46 46 H 1.08996 * 109.47151 * 150.02888 * 28 27 25 47 47 H 1.09006 * 115.55052 * 29.32957 * 29 28 27 48 48 H 1.09002 * 117.49719 * 0.02562 * 30 29 28 49 49 H 1.09001 * 117.49827 * 145.02009 * 30 29 28 50 50 H 1.09005 * 117.49376 * 252.50956 * 31 30 29 51 51 H 1.08994 * 117.52042 * 107.48298 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6105 -0.0064 5 6 4.8977 1.4303 -0.0093 6 8 5.9891 0.8936 -0.0152 7 7 4.8079 2.7750 -0.0050 8 6 6.0251 3.5904 -0.0073 9 1 6.9546 3.0460 -0.1735 10 6 6.0708 4.7915 0.9393 11 1 5.2427 4.9663 1.6261 12 6 7.4517 5.3845 1.2954 13 7 7.7229 6.3680 0.2213 14 6 8.2996 7.6043 0.3403 15 1 8.2147 8.3195 -0.4645 16 6 8.9933 7.9383 1.4954 17 7 9.2515 7.0157 2.3980 18 14 9.5601 9.6970 1.7690 19 1 8.3814 10.6003 1.7844 20 1 10.2724 9.7911 3.0686 21 1 10.4765 10.0981 0.6714 22 6 7.2289 5.7105 -1.0110 23 6 5.9246 5.0055 -0.5803 24 1 4.9959 5.3309 -1.0490 25 6 3.5997 -0.7551 -0.0103 26 6 4.7721 -1.7020 -0.0169 27 7 2.3008 -1.1098 -0.0062 28 6 1.8099 -2.4902 -0.0080 29 6 1.6341 -2.9671 -1.4511 30 6 0.2176 -3.3161 -1.9122 31 6 1.2388 -4.4291 -1.6687 32 1 -0.3633 -0.0056 1.0277 33 1 -0.3634 0.8926 -0.5090 34 1 -0.3634 -0.8873 -0.5185 35 1 1.9628 2.1234 0.0037 36 1 3.9374 3.2029 -0.0004 37 1 8.2123 4.6038 1.2970 38 1 7.4136 5.8812 2.2649 39 1 9.7359 7.2492 3.2052 40 1 7.9548 4.9807 -1.3696 41 1 7.0228 6.4533 -1.7816 42 1 5.0511 -1.9277 -1.0460 43 1 5.6158 -1.2391 0.4951 44 1 4.4975 -2.6238 0.4957 45 1 2.5284 -3.1320 0.5018 46 1 0.8514 -2.5356 0.5090 47 1 2.3039 -2.5128 -2.1813 48 1 -0.5891 -3.2055 -1.1875 49 1 -0.0449 -3.0912 -2.9459 50 1 1.6482 -4.9364 -2.5424 51 1 1.1044 -5.0512 -0.7839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962295187.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:23 Heat of formation + Delta-G solvation = 72.911940 kcal Electronic energy + Delta-G solvation = -29217.213117 eV Core-core repulsion = 25311.984088 eV Total energy + Delta-G solvation = -3905.229029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50853 -40.87894 -39.52690 -38.27286 -36.04311 -34.39463 -33.59861 -33.29446 -32.00006 -29.99293 -28.92875 -28.18099 -27.33162 -25.83550 -23.95168 -23.28487 -22.71295 -21.97513 -21.82976 -21.02390 -20.84522 -19.68795 -18.85030 -18.02532 -17.47255 -16.88276 -16.70515 -16.64510 -16.06685 -15.69781 -15.59982 -15.30308 -14.91557 -14.70217 -14.64029 -14.42989 -14.12780 -14.04454 -13.73228 -13.59595 -13.41365 -13.31160 -13.19950 -13.18941 -13.01012 -12.86749 -12.66779 -12.43449 -12.35563 -12.25440 -12.14565 -12.05434 -11.86094 -11.63169 -11.38804 -10.99484 -10.93594 -10.79483 -10.70060 -9.78188 -9.46491 -8.92432 -8.91464 -7.90537 -5.28205 0.71602 1.43339 1.46953 1.51010 1.57697 1.73359 2.22830 2.44626 2.50493 2.81586 2.94871 3.29884 3.60234 3.60935 3.79075 3.80860 3.86583 3.88204 3.94630 4.00472 4.03809 4.15249 4.18444 4.23964 4.38018 4.41612 4.48001 4.52097 4.59562 4.68586 4.73005 4.78166 4.84020 4.84469 4.91264 4.94035 4.98903 5.00404 5.05305 5.13827 5.21089 5.23934 5.28681 5.35092 5.42885 5.47022 5.59882 5.64149 5.84333 6.14723 6.16553 6.36808 6.67858 6.99925 7.35520 7.67454 8.46558 9.23328 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.030416 B = 0.001821 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.339698 B =15372.472448 C =15686.110882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.021 3.979 3 C -0.183 4.183 4 C -0.264 4.264 5 C 0.588 3.412 6 O -0.591 6.591 7 N -0.681 5.681 8 C 0.119 3.881 9 H 0.104 0.896 10 C -0.185 4.185 11 H 0.119 0.881 12 C 0.191 3.809 13 N -0.616 5.616 14 C -0.242 4.242 15 H 0.085 0.915 16 C -0.065 4.065 17 N -0.950 5.950 18 Si 0.985 3.015 19 H -0.274 1.274 20 H -0.294 1.294 21 H -0.274 1.274 22 C 0.149 3.851 23 C -0.160 4.160 24 H 0.139 0.861 25 C 0.100 3.900 26 C -0.089 4.089 27 N -0.428 5.428 28 C 0.126 3.874 29 C -0.186 4.186 30 C -0.170 4.170 31 C -0.162 4.162 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.413 0.587 37 H -0.006 1.006 38 H 0.058 0.942 39 H 0.250 0.750 40 H 0.019 0.981 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.114 0.886 47 H 0.089 0.911 48 H 0.112 0.888 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.880 -23.853 -6.923 35.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.206 4.206 4 C -0.273 4.273 5 C 0.380 3.620 6 O -0.473 6.473 7 N -0.330 5.330 8 C 0.012 3.988 9 H 0.122 0.878 10 C -0.206 4.206 11 H 0.137 0.863 12 C 0.065 3.935 13 N -0.341 5.341 14 C -0.371 4.371 15 H 0.103 0.897 16 C -0.259 4.259 17 N -0.597 5.597 18 Si 0.812 3.188 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.200 1.200 22 C 0.023 3.977 23 C -0.180 4.180 24 H 0.157 0.843 25 C -0.018 4.018 26 C -0.146 4.146 27 N -0.104 5.104 28 C 0.006 3.994 29 C -0.205 4.205 30 C -0.207 4.207 31 C -0.199 4.199 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.176 0.824 36 H 0.250 0.750 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.122 0.878 46 H 0.132 0.868 47 H 0.107 0.893 48 H 0.130 0.870 49 H 0.113 0.887 50 H 0.117 0.883 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.137 -24.383 -6.792 35.672 hybrid contribution 0.734 1.287 0.330 1.517 sum -24.403 -23.096 -6.462 34.216 Atomic orbital electron populations 1.20449 0.85248 1.04554 1.03659 1.20705 0.95022 0.84868 1.08159 1.21995 0.89795 0.99033 1.09779 1.20021 0.92746 0.92894 1.21687 1.17813 0.88278 0.81607 0.74350 1.90706 1.30446 1.72965 1.53189 1.44930 1.08340 1.05219 1.74506 1.21328 0.89456 0.85909 1.02118 0.87843 1.24395 1.00524 1.01707 0.93997 0.86296 1.20754 0.89642 0.89582 0.93490 1.45476 1.70190 1.15640 1.02744 1.19389 1.25982 0.89055 1.02659 0.89738 1.25825 0.99667 1.02278 0.98108 1.70115 1.45145 1.33389 1.11072 0.85068 0.78013 0.78939 0.76770 1.20011 1.22065 1.19986 1.21273 0.92028 0.94635 0.89754 1.24182 1.00821 0.96365 0.96682 0.84337 1.20390 0.85998 0.93734 1.01635 1.20497 0.93628 0.97100 1.03383 1.43727 1.04020 1.07281 1.55370 1.21723 1.02589 0.78789 0.96308 1.22511 1.00729 1.00639 0.96643 1.23175 0.91793 1.02627 1.03117 1.23061 1.02501 0.90049 1.04322 0.89923 0.89151 0.90227 0.82443 0.74984 0.98847 0.92400 0.94107 0.96350 0.91425 0.90431 0.90813 0.89303 0.87762 0.86771 0.89268 0.86998 0.88742 0.88336 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.80 71.24 0.70 0.03 16 2 C 0.02 0.33 6.85 40.98 0.28 0.61 16 3 C -0.18 -3.78 10.45 23.62 0.25 -3.53 16 4 C -0.26 -7.17 6.29 -19.04 -0.12 -7.29 16 5 C 0.59 19.87 7.81 86.62 0.68 20.55 16 6 O -0.59 -24.29 14.38 -4.12 -0.06 -24.34 16 7 N -0.68 -20.94 5.56 -445.95 -2.48 -23.41 16 8 C 0.12 4.41 5.98 44.99 0.27 4.68 16 9 H 0.10 4.48 7.40 -2.39 -0.02 4.46 16 10 C -0.18 -7.52 7.05 -9.91 -0.07 -7.59 16 11 H 0.12 4.41 8.14 -2.39 -0.02 4.39 16 12 C 0.19 10.11 5.70 86.55 0.49 10.60 16 13 N -0.62 -33.38 3.38 -688.04 -2.32 -35.70 16 14 C -0.24 -13.98 10.35 84.03 0.87 -13.11 16 15 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 16 C -0.07 -3.81 5.40 84.86 0.46 -3.35 16 17 N -0.95 -59.14 10.86 21.65 0.24 -58.91 16 18 Si 0.98 46.44 29.56 68.60 2.03 48.47 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 C 0.15 6.51 7.04 86.53 0.61 7.12 16 23 C -0.16 -5.79 7.05 -9.93 -0.07 -5.86 16 24 H 0.14 4.09 8.14 -2.38 -0.02 4.07 16 25 C 0.10 2.33 6.89 41.78 0.29 2.62 16 26 C -0.09 -1.88 9.52 71.24 0.68 -1.21 16 27 N -0.43 -7.07 2.69 -495.48 -1.33 -8.41 16 28 C 0.13 1.14 5.65 86.38 0.49 1.63 16 29 C -0.19 -1.66 6.01 -10.79 -0.06 -1.73 16 30 C -0.17 -0.98 10.00 30.59 0.31 -0.67 16 31 C -0.16 -0.90 10.25 30.60 0.31 -0.58 16 32 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 0.43 7.43 -2.39 -0.02 0.42 16 35 H 0.16 2.60 7.70 -2.91 -0.02 2.58 16 36 H 0.41 10.00 7.95 -92.71 -0.74 9.26 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.06 3.40 6.51 -2.39 -0.02 3.38 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.07 2.03 6.47 -2.39 -0.02 2.02 16 44 H 0.09 1.29 6.92 -2.39 -0.02 1.27 16 45 H 0.10 0.77 6.88 -2.39 -0.02 0.75 16 46 H 0.11 0.55 7.26 -2.39 -0.02 0.54 16 47 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.11 0.31 8.03 -2.39 -0.02 0.29 16 49 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 51 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -77.87 412.25 2.62 -75.25 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.20 Total: 24.13 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 6.35 Total: 2.92 kcal Atomic # 7 Polarization: -120.53 SS G_CDS: -5.90 Total: -126.43 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.34 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.87 2.62 -75.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962295187.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.165 kcal (2) G-P(sol) polarization free energy of solvation -77.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds