Wall clock time and date at job start Wed Apr 1 2020 02:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38601 * 119.55268 * 2 1 4 4 C 1.38585 * 119.35250 * 179.97438 * 3 2 1 5 5 C 1.38631 * 118.48897 * 359.97438 * 4 3 2 6 6 C 1.39272 * 119.06141 * 0.02562 * 5 4 3 7 7 C 1.48163 * 119.72368 * 179.97438 * 6 5 4 8 8 O 1.21515 * 120.00049 * 15.84249 * 7 6 5 9 9 N 1.34772 * 120.00153 * 195.85475 * 7 6 5 10 10 C 1.46933 * 120.62941 * 7.14009 * 9 7 6 11 11 C 1.53188 * 108.77324 * 126.41898 * 10 9 7 12 12 C 1.53037 * 109.31481 * 54.63758 * 11 10 9 13 13 C 1.53042 * 109.53599 * 298.62888 * 12 11 10 14 14 H 1.08997 * 109.52840 * 301.40151 * 13 12 11 15 15 C 1.52997 * 109.49895 * 181.31773 * 13 12 11 16 16 H 1.09000 * 109.87870 * 179.11298 * 15 13 12 17 17 C 1.54332 * 110.00957 * 300.21357 * 15 13 12 18 18 C 1.55160 * 102.94132 * 141.68371 * 17 15 13 19 19 C 1.55127 * 101.48540 * 324.32769 * 18 17 15 20 20 N 1.47023 * 109.88334 * 58.09157 * 15 13 12 21 21 C 1.36943 * 125.64400 * 61.45643 * 20 15 13 22 22 H 1.07999 * 119.99933 * 14.64177 * 21 20 15 23 23 C 1.38812 * 119.99952 * 194.64680 * 21 20 15 24 24 N 1.31621 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47649 * 269.99709 * 25 23 21 27 27 H 1.48501 * 109.47133 * 30.00156 * 25 23 21 28 28 H 1.48505 * 109.47004 * 149.99631 * 25 23 21 29 29 C 1.46930 * 120.63439 * 187.16743 * 9 7 6 30 30 N 1.31505 * 119.54713 * 180.25369 * 2 1 3 31 31 H 1.09004 * 109.47270 * 89.99651 * 1 2 3 32 32 H 1.08994 * 109.47622 * 210.00029 * 1 2 3 33 33 H 1.08998 * 109.47126 * 329.99826 * 1 2 3 34 34 H 1.07997 * 120.32147 * 359.97438 * 3 2 1 35 35 H 1.08005 * 120.75643 * 179.97438 * 4 3 2 36 36 H 1.08002 * 120.46969 * 180.02562 * 5 4 3 37 37 H 1.08997 * 109.58536 * 246.20214 * 10 9 7 38 38 H 1.08996 * 109.58331 * 6.62695 * 10 9 7 39 39 H 1.09008 * 109.49375 * 174.58829 * 11 10 9 40 40 H 1.09004 * 109.49801 * 294.64999 * 11 10 9 41 41 H 1.09007 * 109.45958 * 178.61623 * 12 11 10 42 42 H 1.08998 * 109.46191 * 58.65211 * 12 11 10 43 43 H 1.09001 * 110.71650 * 260.03968 * 17 15 13 44 44 H 1.08999 * 110.72175 * 23.31567 * 17 15 13 45 45 H 1.09000 * 111.00761 * 82.56866 * 18 17 15 46 46 H 1.08999 * 111.00268 * 206.38579 * 18 17 15 47 47 H 1.09000 * 110.49828 * 278.45738 * 19 18 17 48 48 H 1.08997 * 110.34809 * 156.06430 * 19 18 17 49 49 H 0.96994 * 119.99998 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.58863 * 113.79192 * 29 9 7 51 51 H 1.09000 * 109.69727 * 353.44000 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5764 1.2008 0.0005 5 6 4.2334 -0.0199 0.0016 6 6 3.4820 -1.1925 0.0016 7 6 4.1690 -2.5052 0.0021 8 8 5.3476 -2.5741 0.2899 9 7 3.4869 -3.6230 -0.3168 10 6 2.1078 -3.5413 -0.8170 11 6 2.0179 -4.3046 -2.1421 12 6 2.5293 -5.7327 -1.9393 13 6 3.9956 -5.6940 -1.5027 14 1 4.5877 -5.1795 -2.2596 15 6 4.5155 -7.1228 -1.3320 16 1 5.5644 -7.1027 -1.0362 17 6 3.6831 -7.8636 -0.2641 18 6 3.5664 -9.2968 -0.8470 19 6 3.4600 -9.0044 -2.3668 20 7 4.3657 -7.8635 -2.5932 21 6 4.9639 -7.5431 -3.7826 22 1 5.7824 -6.8388 -3.8030 23 6 4.5182 -8.1236 -4.9622 24 7 3.5210 -8.9823 -4.9373 25 14 5.3338 -7.6861 -6.5847 26 1 4.6409 -6.5196 -7.1884 27 1 6.7595 -7.3461 -6.3463 28 1 5.2493 -8.8450 -7.5095 29 6 4.1079 -4.9465 -0.1703 30 7 2.1554 -1.1440 -0.0051 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6485 2.1398 -0.0004 35 1 4.1319 2.1271 0.0001 36 1 5.3126 -0.0610 0.0025 37 1 1.4287 -3.9883 -0.0911 38 1 1.8387 -2.4973 -0.9776 39 1 0.9805 -4.3336 -2.4756 40 1 2.6277 -3.8025 -2.8933 41 1 2.4435 -6.2854 -2.8749 42 1 1.9344 -6.2257 -1.1705 43 1 4.2068 -7.8775 0.6917 44 1 2.6981 -7.4086 -0.1589 45 1 4.4559 -9.8844 -0.6202 46 1 2.6681 -9.7949 -0.4824 47 1 2.4377 -8.7359 -2.6331 48 1 3.7881 -9.8694 -2.9431 49 1 3.2094 -9.3876 -5.7616 50 1 3.5919 -5.5081 0.6085 51 1 5.1584 -4.8319 0.0970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963255654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:31 Heat of formation + Delta-G solvation = 18.787290 kcal Electronic energy + Delta-G solvation = -31192.833564 eV Core-core repulsion = 27285.257514 eV Total energy + Delta-G solvation = -3907.576050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.01359 -40.70767 -39.62129 -37.81692 -34.80399 -34.11378 -33.98573 -33.12232 -32.41629 -31.20139 -28.76335 -28.21689 -26.98094 -26.44924 -24.90459 -24.00850 -23.07348 -22.61140 -21.92568 -20.82519 -19.81397 -18.74949 -18.36672 -17.68105 -17.05928 -16.88511 -16.76773 -16.56236 -16.14287 -15.74956 -15.64820 -15.47917 -15.17819 -14.82961 -14.52212 -14.39539 -14.16092 -14.00395 -13.79135 -13.61963 -13.31316 -13.19115 -13.12920 -13.04298 -12.86622 -12.85895 -12.74883 -12.45371 -12.03638 -11.98677 -11.86541 -11.77309 -11.61032 -11.47845 -11.40665 -11.25183 -10.95348 -10.88615 -10.64449 -10.04835 -10.01492 -9.60519 -8.74470 -7.84917 -5.19156 -0.37585 0.20152 1.41452 1.41810 1.50578 1.61970 1.88990 2.48280 2.73379 2.97213 3.33008 3.54433 3.65447 3.80526 3.86261 3.97970 4.01053 4.06816 4.11497 4.15534 4.27142 4.28702 4.34077 4.39521 4.43427 4.56523 4.60116 4.66292 4.77228 4.79988 4.81359 4.86658 4.88124 4.93573 5.06798 5.08002 5.13081 5.13918 5.18956 5.22510 5.25561 5.29751 5.45860 5.49051 5.53463 5.57344 5.66235 5.71551 5.75996 5.83535 6.27617 6.32069 6.69079 7.02367 7.14552 7.82669 8.49997 9.25663 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.003031 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.511860 B = 9236.658512 C = 9741.977698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.109 3.891 3 C -0.137 4.137 4 C -0.071 4.071 5 C -0.132 4.132 6 C 0.061 3.939 7 C 0.558 3.442 8 O -0.578 6.578 9 N -0.587 5.587 10 C 0.095 3.905 11 C -0.130 4.130 12 C -0.094 4.094 13 C -0.090 4.090 14 H 0.028 0.972 15 C 0.159 3.841 16 H 0.022 0.978 17 C -0.116 4.116 18 C -0.136 4.136 19 C 0.180 3.820 20 N -0.606 5.606 21 C -0.228 4.228 22 H 0.062 0.938 23 C -0.055 4.055 24 N -0.941 5.941 25 Si 0.963 3.037 26 H -0.289 1.289 27 H -0.276 1.276 28 H -0.291 1.291 29 C 0.123 3.877 30 N -0.466 5.466 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.000 1.000 48 H 0.030 0.970 49 H 0.246 0.754 50 H 0.092 0.908 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 21.033 13.965 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.097 4.097 5 C -0.153 4.153 6 C -0.075 4.075 7 C 0.346 3.654 8 O -0.459 6.459 9 N -0.317 5.317 10 C -0.027 4.027 11 C -0.168 4.168 12 C -0.131 4.131 13 C -0.112 4.112 14 H 0.047 0.953 15 C 0.051 3.949 16 H 0.039 0.961 17 C -0.154 4.154 18 C -0.174 4.174 19 C 0.055 3.945 20 N -0.330 5.330 21 C -0.358 4.358 22 H 0.080 0.920 23 C -0.249 4.249 24 N -0.590 5.590 25 Si 0.792 3.208 26 H -0.216 1.216 27 H -0.201 1.201 28 H -0.217 1.217 29 C 0.000 4.000 30 N -0.179 5.179 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.197 0.803 35 H 0.194 0.806 36 H 0.156 0.844 37 H 0.099 0.901 38 H 0.157 0.843 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.018 0.982 48 H 0.048 0.952 49 H 0.055 0.945 50 H 0.110 0.890 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.187 20.097 13.896 26.104 hybrid contribution 1.395 0.287 -1.643 2.174 sum -7.792 20.384 12.253 25.028 Atomic orbital electron populations 1.20861 0.85916 1.04918 1.04338 1.22136 0.98867 0.88065 0.93975 1.22650 0.94803 1.00398 0.97801 1.22030 0.95122 0.98136 0.94372 1.22208 1.02126 0.92540 0.98440 1.20852 0.90572 0.93231 1.02856 1.18478 0.85500 0.84303 0.77114 1.90728 1.16382 1.86707 1.52043 1.48105 1.15964 1.05435 1.62155 1.22800 0.80336 1.05446 0.94083 1.21953 1.01659 0.95623 0.97580 1.21323 0.94677 0.96194 1.00933 1.21701 0.97263 0.96757 0.95468 0.95332 1.21087 0.96271 0.90312 0.87199 0.96059 1.22663 1.00436 0.95067 0.97192 1.22918 1.01579 0.96830 0.96104 1.21234 0.91598 0.89752 0.91883 1.44657 1.54208 1.28433 1.05694 1.19121 1.10398 1.21749 0.84549 0.91964 1.25499 0.98826 1.00394 1.00163 1.70118 1.29779 1.33007 1.26083 0.85310 0.78111 0.76880 0.80470 1.21611 1.20130 1.21714 1.21684 0.98990 0.81977 0.97355 1.67408 1.07693 1.30322 1.12525 0.89184 0.90672 0.87790 0.80268 0.80628 0.84351 0.90133 0.84263 0.89372 0.94490 0.94386 0.91042 0.89351 0.90017 0.92127 0.89756 0.98182 0.95202 0.94451 0.89037 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.17 71.23 0.72 -0.12 16 2 C 0.11 1.63 6.78 42.69 0.29 1.92 16 3 C -0.14 -1.43 9.75 22.44 0.22 -1.21 16 4 C -0.07 -0.91 10.17 22.45 0.23 -0.68 16 5 C -0.13 -2.83 9.63 22.61 0.22 -2.61 16 6 C 0.06 1.61 6.47 41.89 0.27 1.88 16 7 C 0.56 18.69 7.63 86.88 0.66 19.35 16 8 O -0.58 -22.83 15.87 -3.76 -0.06 -22.89 16 9 N -0.59 -18.67 2.97 -821.95 -2.44 -21.12 16 10 C 0.09 2.55 5.83 86.36 0.50 3.05 16 11 C -0.13 -4.03 6.08 30.67 0.19 -3.85 16 12 C -0.09 -3.47 4.74 30.62 0.15 -3.33 16 13 C -0.09 -3.53 2.10 -10.72 -0.02 -3.56 16 14 H 0.03 1.32 8.04 -2.39 -0.02 1.31 16 15 C 0.16 6.61 2.94 45.34 0.13 6.74 16 16 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 17 C -0.12 -3.82 5.11 31.79 0.16 -3.66 16 18 C -0.14 -4.95 7.10 32.06 0.23 -4.72 16 19 C 0.18 8.86 5.42 86.93 0.47 9.33 16 20 N -0.61 -31.16 2.28 -667.82 -1.53 -32.69 16 21 C -0.23 -13.16 9.84 84.03 0.83 -12.33 16 22 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 23 C -0.06 -3.20 5.47 84.86 0.46 -2.73 16 24 N -0.94 -56.84 10.56 21.65 0.23 -56.61 16 25 Si 0.96 47.45 29.55 68.60 2.03 49.48 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 29 C 0.12 4.08 5.57 86.36 0.48 4.56 16 30 N -0.47 -10.29 6.25 -173.09 -1.08 -11.38 16 31 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 0.29 8.08 -2.39 -0.02 0.27 16 34 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 35 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.14 3.09 7.73 -2.91 -0.02 3.06 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.14 3.52 4.22 -40.75 -0.17 3.35 16 39 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.04 1.79 7.53 -2.38 -0.02 1.77 16 42 H 0.07 2.37 6.13 -2.39 -0.01 2.36 16 43 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 44 H 0.08 2.47 5.54 -2.39 -0.01 2.46 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.00 0.01 8.07 -2.39 -0.02 -0.01 16 48 H 0.03 1.67 6.91 -2.39 -0.02 1.65 16 49 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 50 H 0.09 2.61 6.93 -2.39 -0.02 2.59 16 51 H 0.07 2.61 7.01 -2.39 -0.02 2.59 16 Total: -1.00 -75.73 391.33 4.10 -71.64 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.76 Total: 15.54 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.19 Total: 8.03 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -4.82 Total: -121.79 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.06 Total: -22.89 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -75.73 4.10 -71.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963255654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.424 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds