Wall clock time and date at job start Wed Apr 1 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38601 * 119.55379 * 2 1 4 4 C 1.38582 * 119.35425 * 180.02562 * 3 2 1 5 5 C 1.38629 * 118.48805 * 359.97438 * 4 3 2 6 6 C 1.39268 * 119.05948 * 0.02562 * 5 4 3 7 7 C 1.48169 * 119.71861 * 179.97438 * 6 5 4 8 8 O 1.21515 * 119.99908 * 16.63553 * 7 6 5 9 9 N 1.34779 * 119.99713 * 196.62557 * 7 6 5 10 10 C 1.46916 * 120.63434 * 6.24078 * 9 7 6 11 11 C 1.53193 * 108.78021 * 126.40793 * 10 9 7 12 12 C 1.53044 * 109.30850 * 54.63756 * 11 10 9 13 13 C 1.53039 * 109.53911 * 298.63941 * 12 11 10 14 14 H 1.09005 * 109.49640 * 301.38222 * 13 12 11 15 15 C 1.53001 * 109.50014 * 181.31919 * 13 12 11 16 16 H 1.09001 * 109.99280 * 304.22650 * 15 13 12 17 17 C 1.54330 * 109.99303 * 183.19430 * 15 13 12 18 18 C 1.55158 * 103.02146 * 218.66179 * 17 15 13 19 19 C 1.54909 * 101.57862 * 35.30506 * 18 17 15 20 20 N 1.47014 * 109.88565 * 65.32224 * 15 13 12 21 21 C 1.36933 * 125.65147 * 298.40175 * 20 15 13 22 22 H 1.08001 * 120.00079 * 327.03035 * 21 20 15 23 23 C 1.38813 * 120.00506 * 147.02519 * 21 20 15 24 24 N 1.31613 * 119.99908 * 338.23178 * 23 21 20 25 25 Si 1.86807 * 120.00033 * 158.22711 * 23 21 20 26 26 H 1.48499 * 109.46975 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.46944 * 240.00534 * 25 23 21 28 28 H 1.48494 * 109.47172 * 120.00423 * 25 23 21 29 29 C 1.46925 * 120.62674 * 186.26453 * 9 7 6 30 30 N 1.31496 * 119.54860 * 180.30215 * 2 1 3 31 31 H 1.08997 * 109.47334 * 89.99303 * 1 2 3 32 32 H 1.09003 * 109.47039 * 210.00232 * 1 2 3 33 33 H 1.09005 * 109.47086 * 329.99496 * 1 2 3 34 34 H 1.08007 * 120.32067 * 0.04885 * 3 2 1 35 35 H 1.08001 * 120.75760 * 179.97438 * 4 3 2 36 36 H 1.08005 * 120.46962 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.58813 * 6.62621 * 10 9 7 38 38 H 1.08996 * 109.59183 * 246.20087 * 10 9 7 39 39 H 1.08994 * 109.49732 * 294.69131 * 11 10 9 40 40 H 1.08991 * 109.52926 * 174.60441 * 11 10 9 41 41 H 1.09002 * 109.46146 * 178.61599 * 12 11 10 42 42 H 1.09000 * 109.44613 * 58.64793 * 12 11 10 43 43 H 1.08997 * 110.85415 * 100.19133 * 17 15 13 44 44 H 1.08999 * 110.51691 * 336.97462 * 17 15 13 45 45 H 1.08995 * 111.00538 * 277.23379 * 18 17 15 46 46 H 1.09003 * 111.03658 * 153.39195 * 18 17 15 47 47 H 1.08995 * 110.36522 * 204.15146 * 19 18 17 48 48 H 1.08999 * 110.36596 * 81.83053 * 19 18 17 49 49 H 0.96998 * 120.00377 * 358.58982 * 24 23 21 50 50 H 1.09003 * 109.58866 * 113.80487 * 29 9 7 51 51 H 1.08998 * 109.58930 * 353.36998 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5764 1.2009 -0.0005 5 6 4.2334 -0.0199 -0.0005 6 6 3.4820 -1.1925 -0.0005 7 6 4.1691 -2.5052 -0.0011 8 8 5.3443 -2.5759 0.2998 9 7 3.4906 -3.6208 -0.3350 10 6 2.1104 -3.5371 -0.8314 11 6 2.0208 -4.2811 -2.1675 12 6 2.5382 -5.7101 -1.9867 13 6 4.0051 -5.6722 -1.5521 14 1 4.5934 -5.1445 -2.3029 15 6 4.5308 -7.1014 -1.4035 16 1 3.9026 -7.6592 -0.7089 17 6 5.9854 -7.0776 -0.8883 18 6 6.6565 -8.2290 -1.6830 19 6 5.9326 -8.1273 -3.0488 20 7 4.5425 -7.7687 -2.7134 21 6 3.4449 -8.0116 -3.4953 22 1 2.4898 -8.2191 -3.0358 23 6 3.5597 -7.9910 -4.8785 24 7 4.5540 -7.3424 -5.4467 25 14 2.3029 -8.8839 -5.9334 26 1 1.2928 -9.5314 -5.0584 27 1 2.9873 -9.9194 -6.7488 28 1 1.6301 -7.9114 -6.8316 29 6 4.1171 -4.9438 -0.2091 30 7 2.1555 -1.1439 -0.0060 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.6485 2.1399 0.0008 35 1 4.1320 2.1270 -0.0010 36 1 5.3127 -0.0610 -0.0005 37 1 1.8368 -2.4920 -0.9763 38 1 1.4343 -3.9974 -0.1109 39 1 2.6277 -3.7661 -2.9121 40 1 0.9833 -4.3093 -2.5001 41 1 2.4527 -6.2494 -2.9301 42 1 1.9465 -6.2164 -1.2240 43 1 6.0210 -7.2765 0.1828 44 1 6.4572 -6.1228 -1.1202 45 1 6.4659 -9.1926 -1.2107 46 1 7.7269 -8.0556 -1.7942 47 1 5.9628 -9.0860 -3.5663 48 1 6.3876 -7.3496 -3.6622 49 1 5.1950 -6.8617 -4.8999 50 1 3.6046 -5.5189 0.5622 51 1 5.1677 -4.8269 0.0567 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963255656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:40 Heat of formation + Delta-G solvation = 28.707951 kcal Electronic energy + Delta-G solvation = -31285.187095 eV Core-core repulsion = 27378.041237 eV Total energy + Delta-G solvation = -3907.145858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.02973 -39.46246 -38.12919 -36.49332 -33.39361 -33.26861 -32.82525 -32.07889 -30.97340 -29.10596 -28.07651 -26.86710 -25.74113 -24.46940 -23.70131 -22.79161 -22.21452 -20.77702 -19.97389 -19.44443 -19.05655 -17.61648 -17.05645 -16.79842 -16.21186 -15.74358 -15.46673 -15.17291 -14.48582 -14.35853 -14.24455 -13.97526 -13.69558 -13.62107 -13.44869 -13.18559 -13.08035 -12.71439 -12.63177 -12.47153 -12.46891 -12.20783 -12.01512 -11.82169 -11.56540 -11.00555 -10.81223 -10.66283 -10.61551 -10.26496 -10.23786 -10.17886 -10.14928 -10.08596 -10.05064 -9.81276 -9.51691 -9.37061 -9.25504 -8.96724 -8.37943 -8.23948 -6.74856 -6.02505 -3.24185 0.45606 0.90087 2.68588 3.06467 3.49198 3.52717 3.58380 3.65233 3.86612 4.35099 4.47806 4.56918 4.67985 4.78623 5.00170 5.20570 5.22552 5.27063 5.29539 5.30903 5.37346 5.46890 5.52714 5.56329 5.66006 5.69192 5.73000 5.80615 5.81077 5.82390 5.90536 6.00559 6.08210 6.17020 6.25567 6.29653 6.34055 6.41403 6.42521 6.48819 6.58052 6.60002 6.73348 6.89215 6.96292 7.03404 7.15234 7.25097 7.43868 7.46116 7.62611 8.00595 8.23085 8.57088 9.07940 9.83800 10.49305 11.25277 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014030 B = 0.003223 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.199361 B = 8685.252547 C = 9911.015562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.119 3.881 3 C -0.154 4.154 4 C -0.077 4.077 5 C -0.120 4.120 6 C 0.092 3.908 7 C 0.564 3.436 8 O -0.542 6.542 9 N -0.581 5.581 10 C 0.084 3.916 11 C -0.135 4.135 12 C -0.125 4.125 13 C -0.095 4.095 14 H 0.065 0.935 15 C 0.165 3.835 16 H 0.033 0.967 17 C -0.129 4.129 18 C -0.136 4.136 19 C 0.140 3.860 20 N -0.591 5.591 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.022 4.022 24 N -0.914 5.914 25 Si 1.072 2.928 26 H -0.291 1.291 27 H -0.291 1.291 28 H -0.293 1.293 29 C 0.112 3.888 30 N -0.448 5.448 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.128 0.872 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.026 0.974 49 H 0.272 0.728 50 H 0.063 0.937 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.923 15.774 11.971 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.020 4.020 3 C -0.174 4.174 4 C -0.103 4.103 5 C -0.141 4.141 6 C -0.045 4.045 7 C 0.351 3.649 8 O -0.419 6.419 9 N -0.310 5.310 10 C -0.038 4.038 11 C -0.173 4.173 12 C -0.162 4.162 13 C -0.116 4.116 14 H 0.084 0.916 15 C 0.058 3.942 16 H 0.051 0.949 17 C -0.167 4.167 18 C -0.175 4.175 19 C 0.015 3.985 20 N -0.316 5.316 21 C -0.454 4.454 22 H 0.075 0.925 23 C -0.225 4.225 24 N -0.554 5.554 25 Si 0.903 3.097 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.220 1.220 29 C -0.011 4.011 30 N -0.161 5.161 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.044 0.956 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.262 14.501 10.498 18.966 hybrid contribution 0.873 1.250 1.512 2.147 sum -5.389 15.750 12.011 20.527 Atomic orbital electron populations 1.20754 0.88205 1.03778 1.03506 1.21507 0.97388 0.88224 0.94901 1.22158 0.95006 0.99373 1.00843 1.21621 0.94447 0.98267 0.95964 1.22105 1.02307 0.91746 0.97933 1.21245 0.89571 0.94415 0.99288 1.17909 0.85731 0.83114 0.78187 1.90762 1.14948 1.85882 1.50336 1.47995 1.15278 1.05915 1.61862 1.22746 0.80986 1.04861 0.95181 1.21982 1.01033 0.97800 0.96480 1.21900 0.94248 0.95055 1.04971 1.21894 0.97827 0.97316 0.94583 0.91639 1.20995 0.93133 0.90255 0.89824 0.94907 1.22637 0.96806 0.98698 0.98581 1.22773 0.98405 0.98027 0.98294 1.21566 0.85916 0.98008 0.93060 1.44514 1.02960 1.65379 1.18721 1.19543 0.89303 1.47441 0.89138 0.92460 1.25969 1.02709 0.98867 0.94997 1.70696 1.16616 1.29299 1.38782 0.83399 0.74903 0.76097 0.75336 1.21715 1.21757 1.22049 1.21935 0.98971 0.81413 0.98755 1.67606 1.08529 1.28455 1.11554 0.90018 0.90108 0.90534 0.84359 0.84042 0.83496 0.85534 0.92034 0.92438 0.91510 0.86781 0.93670 0.92213 0.91786 0.92084 0.92286 0.93860 0.95617 0.91602 0.91883 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.17 36.00 0.37 -0.31 16 2 C 0.12 1.14 6.78 -82.60 -0.56 0.58 16 3 C -0.15 -1.20 9.75 -39.32 -0.38 -1.59 16 4 C -0.08 -0.65 10.17 -39.31 -0.40 -1.05 16 5 C -0.12 -1.39 9.63 -39.05 -0.38 -1.77 16 6 C 0.09 1.30 6.47 -83.01 -0.54 0.76 16 7 C 0.56 9.61 7.63 -12.18 -0.09 9.51 16 8 O -0.54 -10.47 15.87 5.35 0.08 -10.38 16 9 N -0.58 -9.71 2.97 -173.76 -0.52 -10.23 16 10 C 0.08 1.27 5.85 -3.72 -0.02 1.25 16 11 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 12 C -0.12 -2.43 4.72 -26.69 -0.13 -2.56 16 13 C -0.09 -1.88 1.96 -90.50 -0.18 -2.06 16 14 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 15 C 0.17 3.43 2.82 -66.95 -0.19 3.25 16 16 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 17 C -0.13 -2.36 5.46 -24.89 -0.14 -2.49 16 18 C -0.14 -2.55 7.09 -24.58 -0.17 -2.73 16 19 C 0.14 3.27 5.76 -2.53 -0.01 3.26 16 20 N -0.59 -14.52 2.84 -162.58 -0.46 -14.98 16 21 C -0.33 -8.71 6.95 -15.06 -0.10 -8.81 16 22 H 0.06 1.55 7.47 -52.49 -0.39 1.16 16 23 C -0.02 -0.60 5.22 -17.43 -0.09 -0.69 16 24 N -0.91 -27.19 13.24 55.49 0.73 -26.46 16 25 Si 1.07 25.07 29.97 -169.99 -5.09 19.98 16 26 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 C 0.11 1.94 5.32 -3.71 -0.02 1.92 16 30 N -0.45 -5.61 6.25 -6.06 -0.04 -5.65 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.15 1.66 7.73 -52.48 -0.41 1.25 16 37 H 0.13 1.80 4.19 -72.63 -0.30 1.49 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.11 2.68 4.85 -51.93 -0.25 2.43 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.19 7.37 -51.93 -0.38 0.80 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.03 0.66 6.60 -51.93 -0.34 0.31 16 49 H 0.27 8.19 5.93 -40.82 -0.24 7.95 16 50 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.09 1.59 5.93 -51.93 -0.31 1.28 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -32.09 390.39 -10.79 -42.88 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.19 Total: 4.92 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -3.20 Total: -5.97 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.28 Total: -57.32 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.98 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.09 -10.79 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963255656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.592 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds