Wall clock time and date at job start Wed Apr 1 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38398 * 120.85316 * 2 1 4 4 C 1.38309 * 119.30410 * 179.97438 * 3 2 1 5 5 N 1.31961 * 121.07844 * 0.02562 * 4 3 2 6 6 C 1.31662 * 121.87964 * 359.71706 * 5 4 3 7 7 C 1.39556 * 120.56822 * 0.54571 * 6 5 4 8 8 C 1.47836 * 120.56329 * 179.75142 * 7 6 5 9 9 O 1.21555 * 119.99978 * 235.00273 * 8 7 6 10 10 N 1.34779 * 120.00431 * 54.99822 * 8 7 6 11 11 C 1.46929 * 120.62539 * 354.81030 * 10 8 7 12 12 C 1.53194 * 108.77121 * 126.66512 * 11 10 8 13 13 C 1.53046 * 109.30926 * 54.63590 * 12 11 10 14 14 C 1.53039 * 109.54032 * 298.63216 * 13 12 11 15 15 H 1.08998 * 109.49623 * 301.41725 * 14 13 12 16 16 C 1.52995 * 109.49572 * 181.31924 * 14 13 12 17 17 H 1.08994 * 109.87784 * 59.46976 * 16 14 13 18 18 C 1.54327 * 109.88437 * 298.29586 * 16 14 13 19 19 C 1.55152 * 102.94595 * 218.39563 * 18 16 14 20 20 C 1.54916 * 101.58404 * 35.49769 * 19 18 16 21 21 N 1.47028 * 109.87969 * 180.49259 * 16 14 13 22 22 C 1.36936 * 125.64576 * 298.38966 * 21 16 14 23 23 H 1.08004 * 119.99844 * 345.51152 * 22 21 16 24 24 C 1.38809 * 120.00300 * 165.51656 * 22 21 16 25 25 N 1.31624 * 119.99647 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00507 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46692 * 59.99874 * 26 24 22 28 28 H 1.48494 * 109.47236 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47007 * 300.00067 * 26 24 22 30 30 C 1.46919 * 120.63470 * 175.09347 * 10 8 7 31 31 H 1.09001 * 109.47296 * 271.48851 * 1 2 3 32 32 H 1.09003 * 109.47430 * 31.48542 * 1 2 3 33 33 H 1.09001 * 109.47300 * 151.48976 * 1 2 3 34 34 H 1.07993 * 120.34924 * 359.95447 * 3 2 1 35 35 H 1.07996 * 119.46386 * 180.02562 * 4 3 2 36 36 H 1.08006 * 119.71634 * 180.27394 * 6 5 4 37 37 H 1.08992 * 109.58846 * 246.45826 * 11 10 8 38 38 H 1.09000 * 109.58596 * 6.88390 * 11 10 8 39 39 H 1.09001 * 109.50044 * 294.68626 * 12 11 10 40 40 H 1.08993 * 109.52489 * 174.60090 * 12 11 10 41 41 H 1.09004 * 109.45499 * 178.61170 * 13 12 11 42 42 H 1.08994 * 109.44639 * 58.65187 * 13 12 11 43 43 H 1.09008 * 110.71868 * 336.75590 * 18 16 14 44 44 H 1.09000 * 110.72204 * 100.02629 * 18 16 14 45 45 H 1.09006 * 111.00332 * 277.43069 * 19 18 16 46 46 H 1.08993 * 111.04112 * 153.58984 * 19 18 16 47 47 H 1.08999 * 110.36742 * 204.15726 * 20 19 18 48 48 H 1.09007 * 110.36286 * 81.82948 * 20 19 18 49 49 H 0.96997 * 120.00007 * 179.97438 * 25 24 22 50 50 H 1.09002 * 109.58589 * 353.12616 * 30 10 8 51 51 H 1.09000 * 109.58803 * 113.40198 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1507 0.0005 5 7 4.2497 0.0025 0.0005 6 6 3.6197 -1.1535 0.0056 7 6 2.2250 -1.2017 -0.0003 8 6 1.5176 -2.4999 -0.0002 9 8 0.7004 -2.7468 -0.8655 10 7 1.7789 -3.4097 0.9592 11 6 2.8432 -3.1740 1.9444 12 6 2.2576 -3.3352 3.3508 13 6 1.5871 -4.7061 3.4657 14 6 0.4441 -4.8034 2.4526 15 1 -0.2766 -4.0075 2.6398 16 6 -0.2465 -6.1616 2.5908 17 1 -0.6402 -6.2761 3.6006 18 6 0.7561 -7.2939 2.2835 19 6 -0.1081 -8.3220 1.5068 20 6 -1.0504 -7.3919 0.7025 21 7 -1.3391 -6.2687 1.6128 22 6 -2.4419 -5.4589 1.5564 23 1 -2.6858 -4.8198 2.3921 24 6 -3.2464 -5.4596 0.4252 25 7 -2.9488 -6.2383 -0.5935 26 14 -4.7511 -4.3555 0.3485 27 1 -4.3325 -2.9378 0.4902 28 1 -5.4352 -4.5410 -0.9564 29 1 -5.6814 -4.7094 1.4504 30 6 1.0092 -4.6587 1.0361 31 1 -0.3634 0.0267 1.0273 32 1 -0.3634 0.8764 -0.5367 33 1 -0.3634 -0.9030 -0.4905 34 1 1.6965 2.1345 -0.0007 35 1 4.1558 2.0763 0.0010 36 1 4.1871 -2.0725 0.0099 37 1 3.6445 -3.8979 1.7969 38 1 3.2343 -2.1636 1.8250 39 1 1.5197 -2.5531 3.5295 40 1 3.0559 -3.2577 4.0888 41 1 1.1910 -4.8332 4.4732 42 1 2.3200 -5.4868 3.2624 43 1 1.5724 -6.9277 1.6607 44 1 1.1392 -7.7306 3.2057 45 1 -0.6740 -8.9535 2.1918 46 1 0.5071 -8.9260 0.8399 47 1 -1.9702 -7.9161 0.4431 48 1 -0.5510 -7.0322 -0.1972 49 1 -3.5112 -6.2390 -1.3838 50 1 0.1902 -4.6281 0.3174 51 1 1.6603 -5.5037 0.8121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963273827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:23 Heat of formation + Delta-G solvation = 25.607768 kcal Electronic energy + Delta-G solvation = -31951.550838 eV Core-core repulsion = 28044.270546 eV Total energy + Delta-G solvation = -3907.280292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.94435 -39.49227 -38.07991 -36.43440 -33.97060 -33.18374 -32.32270 -31.59601 -30.82651 -29.24813 -28.11637 -26.69073 -25.67720 -24.49837 -23.80432 -22.89695 -22.20881 -21.13309 -20.16326 -19.36091 -18.35802 -17.47023 -16.73605 -16.56145 -16.49831 -15.93554 -15.15188 -14.78868 -14.55357 -14.46122 -14.17748 -14.03744 -13.93452 -13.81995 -13.23822 -13.04640 -12.93958 -12.86594 -12.78790 -12.42621 -12.17793 -11.93667 -11.84757 -11.65450 -11.48085 -11.26931 -10.98620 -10.85414 -10.74070 -10.62655 -10.17034 -10.09986 -10.05565 -9.83781 -9.76556 -9.62660 -9.57369 -9.53571 -9.43199 -9.15479 -8.50705 -8.29172 -6.70861 -5.67304 -3.02324 0.68578 1.02219 2.80775 3.16387 3.44169 3.48853 3.50029 3.59457 4.17077 4.46655 4.54414 4.54762 4.58735 4.84819 4.87920 5.01692 5.10143 5.23246 5.33957 5.37388 5.39709 5.46576 5.53834 5.59356 5.59931 5.63384 5.69441 5.71791 5.74726 5.87019 5.93192 5.97803 6.03153 6.09458 6.19495 6.22547 6.25022 6.37153 6.39706 6.44073 6.52985 6.62231 6.73292 6.84056 6.87022 7.01114 7.10209 7.59414 7.63175 7.68688 7.69362 7.86801 8.35736 8.37144 9.27241 9.88810 10.57122 11.44754 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.004308 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.818521 B = 6498.533848 C = 8111.781495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.008 3.992 3 C -0.179 4.179 4 C 0.111 3.889 5 N -0.491 5.491 6 C 0.130 3.870 7 C -0.173 4.173 8 C 0.559 3.441 9 O -0.514 6.514 10 N -0.601 5.601 11 C 0.100 3.900 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.105 4.105 15 H 0.071 0.929 16 C 0.169 3.831 17 H 0.035 0.965 18 C -0.129 4.129 19 C -0.150 4.150 20 C 0.173 3.827 21 N -0.593 5.593 22 C -0.229 4.229 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.913 5.913 26 Si 0.905 3.095 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.286 1.286 30 C 0.125 3.875 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.025 0.975 49 H 0.253 0.747 50 H 0.113 0.887 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.483 9.463 6.085 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.000 4.000 3 C -0.199 4.199 4 C -0.045 4.045 5 N -0.200 5.200 6 C -0.028 4.028 7 C -0.178 4.178 8 C 0.345 3.655 9 O -0.390 6.390 10 N -0.334 5.334 11 C -0.023 4.023 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.127 4.127 15 H 0.089 0.911 16 C 0.060 3.940 17 H 0.052 0.948 18 C -0.167 4.167 19 C -0.189 4.189 20 C 0.048 3.952 21 N -0.317 5.317 22 C -0.358 4.358 23 H 0.088 0.912 24 C -0.195 4.195 25 N -0.559 5.559 26 Si 0.735 3.265 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.213 1.213 30 C 0.005 3.995 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.063 0.937 50 H 0.131 0.869 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.736 9.356 5.426 18.279 hybrid contribution -1.620 0.763 -0.004 1.791 sum 13.116 10.120 5.422 17.431 Atomic orbital electron populations 1.21105 0.89417 1.05375 1.03493 1.20399 0.97308 0.91354 0.90977 1.22016 0.95561 0.98557 1.03733 1.22874 0.91702 0.96346 0.93588 1.67692 1.40718 0.98243 1.13369 1.22934 0.90154 0.96575 0.93120 1.20982 0.95554 0.94737 1.06534 1.18069 0.82353 0.83037 0.82072 1.90864 1.33954 1.78072 1.36091 1.48167 1.35735 1.20290 1.29220 1.21911 0.89912 1.01707 0.88792 1.21896 1.00396 0.98995 0.95754 1.21616 0.98067 0.95913 0.99738 1.21953 0.96101 1.01281 0.93331 0.91099 1.20904 0.88266 0.90853 0.93959 0.94774 1.22684 0.97836 0.96808 0.99367 1.23021 0.98760 0.97753 0.99368 1.21420 0.96417 0.86726 0.90623 1.44488 1.19472 1.34096 1.33614 1.18809 1.00338 1.17422 0.99187 0.91181 1.24823 0.99608 0.99409 0.95657 1.69903 1.39360 1.40664 1.05967 0.86318 0.82737 0.80678 0.76730 1.21204 1.21628 1.21302 1.21818 0.95978 0.82493 0.99244 0.90178 0.90658 0.88491 0.84247 0.82443 0.82296 0.91221 0.90201 0.91794 0.91224 0.92017 0.91923 0.91623 0.92564 0.92504 0.92593 0.91282 0.95730 0.93691 0.86871 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.71 36.01 0.35 -1.50 16 2 C 0.01 0.10 5.95 -103.91 -0.62 -0.51 16 3 C -0.18 -1.81 9.81 -39.50 -0.39 -2.20 16 4 C 0.11 1.10 11.17 -17.47 -0.20 0.90 16 5 N -0.49 -5.87 10.35 -12.91 -0.13 -6.00 16 6 C 0.13 1.61 8.62 -17.13 -0.15 1.46 16 7 C -0.17 -2.47 4.89 -104.82 -0.51 -2.99 16 8 C 0.56 9.82 6.62 -12.33 -0.08 9.74 16 9 O -0.51 -11.46 14.71 5.32 0.08 -11.38 16 10 N -0.60 -9.57 2.97 -173.89 -0.52 -10.09 16 11 C 0.10 1.18 5.58 -3.71 -0.02 1.16 16 12 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 13 C -0.12 -1.51 4.93 -26.69 -0.13 -1.64 16 14 C -0.11 -1.83 2.11 -90.51 -0.19 -2.03 16 15 H 0.07 1.43 8.00 -51.93 -0.42 1.02 16 16 C 0.17 3.27 2.94 -66.95 -0.20 3.07 16 17 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.13 -2.13 5.24 -24.90 -0.13 -2.26 16 19 C -0.15 -2.77 7.08 -24.58 -0.17 -2.95 16 20 C 0.17 4.11 5.41 -2.53 -0.01 4.10 16 21 N -0.59 -14.41 2.49 -162.57 -0.41 -14.82 16 22 C -0.23 -6.24 9.82 -15.06 -0.15 -6.39 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 24 C 0.00 0.07 5.47 -17.43 -0.10 -0.03 16 25 N -0.91 -26.87 10.57 55.49 0.59 -26.29 16 26 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 30 C 0.13 2.32 5.27 -3.72 -0.02 2.30 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.10 1.67 5.86 -51.93 -0.30 1.36 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.16 1.69 7.39 -52.48 -0.39 1.30 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.87 4.72 -51.93 -0.25 0.62 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.76 7.21 -51.93 -0.37 0.39 16 43 H 0.07 1.04 5.41 -51.92 -0.28 0.76 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.85 6.92 -51.93 -0.36 1.49 16 48 H 0.02 0.64 8.06 -51.93 -0.42 0.22 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.11 2.75 6.70 -51.93 -0.35 2.40 16 51 H 0.06 1.10 5.85 -51.93 -0.30 0.79 16 LS Contribution 388.42 15.07 5.85 5.85 Total: -1.00 -32.35 388.42 -10.49 -42.85 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -8.06 Total: 3.80 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.88 Total: -1.43 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.47 Total: -57.19 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.35 -10.49 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963273827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.455 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds