Wall clock time and date at job start Wed Apr 1 2020 03:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38398 * 120.85316 * 2 1 4 4 C 1.38309 * 119.30410 * 179.97438 * 3 2 1 5 5 N 1.31961 * 121.07844 * 0.02562 * 4 3 2 6 6 C 1.31662 * 121.87964 * 359.71706 * 5 4 3 7 7 C 1.39556 * 120.56822 * 0.54571 * 6 5 4 8 8 C 1.47836 * 120.56329 * 179.75142 * 7 6 5 9 9 O 1.21555 * 119.99978 * 235.00273 * 8 7 6 10 10 N 1.34779 * 120.00431 * 54.99822 * 8 7 6 11 11 C 1.46929 * 120.62539 * 354.81030 * 10 8 7 12 12 C 1.53194 * 108.77121 * 126.66512 * 11 10 8 13 13 C 1.53046 * 109.30926 * 54.63590 * 12 11 10 14 14 C 1.53039 * 109.54032 * 298.63216 * 13 12 11 15 15 H 1.08998 * 109.49623 * 301.41725 * 14 13 12 16 16 C 1.52995 * 109.49572 * 181.31924 * 14 13 12 17 17 H 1.08994 * 109.87784 * 59.46976 * 16 14 13 18 18 C 1.54327 * 109.88437 * 298.29586 * 16 14 13 19 19 C 1.55152 * 102.94595 * 218.39563 * 18 16 14 20 20 C 1.54916 * 101.58404 * 35.49769 * 19 18 16 21 21 N 1.47028 * 109.87969 * 180.49259 * 16 14 13 22 22 C 1.36936 * 125.64576 * 298.38966 * 21 16 14 23 23 H 1.08004 * 119.99844 * 345.51152 * 22 21 16 24 24 C 1.38809 * 120.00300 * 165.51656 * 22 21 16 25 25 N 1.31624 * 119.99647 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00507 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46692 * 59.99874 * 26 24 22 28 28 H 1.48494 * 109.47236 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47007 * 300.00067 * 26 24 22 30 30 C 1.46919 * 120.63470 * 175.09347 * 10 8 7 31 31 H 1.09001 * 109.47296 * 271.48851 * 1 2 3 32 32 H 1.09003 * 109.47430 * 31.48542 * 1 2 3 33 33 H 1.09001 * 109.47300 * 151.48976 * 1 2 3 34 34 H 1.07993 * 120.34924 * 359.95447 * 3 2 1 35 35 H 1.07996 * 119.46386 * 180.02562 * 4 3 2 36 36 H 1.08006 * 119.71634 * 180.27394 * 6 5 4 37 37 H 1.08992 * 109.58846 * 246.45826 * 11 10 8 38 38 H 1.09000 * 109.58596 * 6.88390 * 11 10 8 39 39 H 1.09001 * 109.50044 * 294.68626 * 12 11 10 40 40 H 1.08993 * 109.52489 * 174.60090 * 12 11 10 41 41 H 1.09004 * 109.45499 * 178.61170 * 13 12 11 42 42 H 1.08994 * 109.44639 * 58.65187 * 13 12 11 43 43 H 1.09008 * 110.71868 * 336.75590 * 18 16 14 44 44 H 1.09000 * 110.72204 * 100.02629 * 18 16 14 45 45 H 1.09006 * 111.00332 * 277.43069 * 19 18 16 46 46 H 1.08993 * 111.04112 * 153.58984 * 19 18 16 47 47 H 1.08999 * 110.36742 * 204.15726 * 20 19 18 48 48 H 1.09007 * 110.36286 * 81.82948 * 20 19 18 49 49 H 0.96997 * 120.00007 * 179.97438 * 25 24 22 50 50 H 1.09002 * 109.58589 * 353.12616 * 30 10 8 51 51 H 1.09000 * 109.58803 * 113.40198 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1507 0.0005 5 7 4.2497 0.0025 0.0005 6 6 3.6197 -1.1535 0.0056 7 6 2.2250 -1.2017 -0.0003 8 6 1.5176 -2.4999 -0.0002 9 8 0.7004 -2.7468 -0.8655 10 7 1.7789 -3.4097 0.9592 11 6 2.8432 -3.1740 1.9444 12 6 2.2576 -3.3352 3.3508 13 6 1.5871 -4.7061 3.4657 14 6 0.4441 -4.8034 2.4526 15 1 -0.2766 -4.0075 2.6398 16 6 -0.2465 -6.1616 2.5908 17 1 -0.6402 -6.2761 3.6006 18 6 0.7561 -7.2939 2.2835 19 6 -0.1081 -8.3220 1.5068 20 6 -1.0504 -7.3919 0.7025 21 7 -1.3391 -6.2687 1.6128 22 6 -2.4419 -5.4589 1.5564 23 1 -2.6858 -4.8198 2.3921 24 6 -3.2464 -5.4596 0.4252 25 7 -2.9488 -6.2383 -0.5935 26 14 -4.7511 -4.3555 0.3485 27 1 -4.3325 -2.9378 0.4902 28 1 -5.4352 -4.5410 -0.9564 29 1 -5.6814 -4.7094 1.4504 30 6 1.0092 -4.6587 1.0361 31 1 -0.3634 0.0267 1.0273 32 1 -0.3634 0.8764 -0.5367 33 1 -0.3634 -0.9030 -0.4905 34 1 1.6965 2.1345 -0.0007 35 1 4.1558 2.0763 0.0010 36 1 4.1871 -2.0725 0.0099 37 1 3.6445 -3.8979 1.7969 38 1 3.2343 -2.1636 1.8250 39 1 1.5197 -2.5531 3.5295 40 1 3.0559 -3.2577 4.0888 41 1 1.1910 -4.8332 4.4732 42 1 2.3200 -5.4868 3.2624 43 1 1.5724 -6.9277 1.6607 44 1 1.1392 -7.7306 3.2057 45 1 -0.6740 -8.9535 2.1918 46 1 0.5071 -8.9260 0.8399 47 1 -1.9702 -7.9161 0.4431 48 1 -0.5510 -7.0322 -0.1972 49 1 -3.5112 -6.2390 -1.3838 50 1 0.1902 -4.6281 0.3174 51 1 1.6603 -5.5037 0.8121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963273827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:22 Heat of formation + Delta-G solvation = 5.813282 kcal Electronic energy + Delta-G solvation = -31952.409191 eV Core-core repulsion = 28044.270546 eV Total energy + Delta-G solvation = -3908.138646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.05395 -40.70289 -39.55650 -37.87293 -34.95102 -34.81803 -34.00425 -32.65835 -32.05376 -31.15063 -29.17897 -28.19576 -26.84539 -26.48132 -24.83653 -24.19075 -23.24262 -22.41337 -21.85567 -20.76150 -19.74754 -18.79485 -18.44018 -17.71205 -17.39064 -17.29853 -16.81417 -16.38869 -15.88771 -15.62396 -15.56602 -15.48860 -15.20481 -14.93780 -14.56656 -14.30116 -14.10683 -13.98044 -13.89326 -13.75459 -13.68488 -13.59385 -13.11379 -13.00068 -12.92276 -12.89527 -12.72309 -12.68725 -12.15043 -12.02097 -11.84362 -11.76591 -11.54416 -11.35798 -11.26207 -11.14244 -11.10343 -10.64861 -10.59267 -10.48317 -10.13266 -9.62060 -8.74772 -7.85575 -5.19178 -0.25051 0.10457 1.36506 1.40786 1.45626 1.50948 1.94534 2.47232 2.66942 3.25769 3.34319 3.47736 3.58285 3.64549 3.72214 3.86291 3.91452 4.01674 4.06890 4.14270 4.15831 4.30764 4.31332 4.35585 4.38958 4.44882 4.51143 4.54570 4.61491 4.66746 4.78695 4.80158 4.84147 4.91170 4.97328 5.00727 5.03921 5.07685 5.14509 5.22859 5.24312 5.29875 5.36612 5.47924 5.51909 5.57276 5.59509 5.63517 5.69299 5.82019 6.27309 6.34610 6.81029 7.05651 7.13286 7.83680 8.49793 9.25456 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.004308 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.818521 B = 6498.533848 C = 8111.781495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.010 4.010 3 C -0.166 4.166 4 C 0.120 3.880 5 N -0.500 5.500 6 C 0.136 3.864 7 C -0.194 4.194 8 C 0.553 3.447 9 O -0.581 6.581 10 N -0.599 5.599 11 C 0.095 3.905 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.093 4.093 15 H 0.031 0.969 16 C 0.158 3.842 17 H 0.037 0.963 18 C -0.114 4.114 19 C -0.137 4.137 20 C 0.178 3.822 21 N -0.611 5.611 22 C -0.226 4.226 23 H 0.069 0.931 24 C -0.058 4.058 25 N -0.943 5.943 26 Si 0.960 3.040 27 H -0.287 1.287 28 H -0.296 1.296 29 H -0.271 1.271 30 C 0.138 3.862 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.174 0.826 35 H 0.200 0.800 36 H 0.174 0.826 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.028 0.972 48 H -0.013 1.013 49 H 0.243 0.757 50 H 0.043 0.957 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.310 11.130 8.996 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.019 4.019 3 C -0.186 4.186 4 C -0.035 4.035 5 N -0.209 5.209 6 C -0.022 4.022 7 C -0.199 4.199 8 C 0.341 3.659 9 O -0.461 6.461 10 N -0.330 5.330 11 C -0.026 4.026 12 C -0.165 4.165 13 C -0.144 4.144 14 C -0.115 4.115 15 H 0.049 0.951 16 C 0.051 3.949 17 H 0.055 0.945 18 C -0.151 4.151 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.335 5.335 22 C -0.356 4.356 23 H 0.087 0.913 24 C -0.252 4.252 25 N -0.592 5.592 26 Si 0.789 3.211 27 H -0.214 1.214 28 H -0.222 1.222 29 H -0.197 1.197 30 C 0.016 3.984 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.191 0.809 35 H 0.216 0.784 36 H 0.191 0.809 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.046 0.954 48 H 0.005 0.995 49 H 0.052 0.948 50 H 0.062 0.938 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.615 11.026 8.420 23.216 hybrid contribution -2.772 0.330 -0.882 2.928 sum 15.843 11.356 7.537 20.899 Atomic orbital electron populations 1.21013 0.90554 1.04089 1.03384 1.20536 0.96897 0.92361 0.92083 1.22338 0.95823 0.98490 1.01926 1.23587 0.91841 0.97109 0.91010 1.67809 1.40774 0.98578 1.13727 1.23061 0.89004 0.97626 0.92515 1.20781 0.96473 0.93118 1.09552 1.18709 0.81603 0.84297 0.81305 1.90828 1.37016 1.79444 1.38791 1.48268 1.36081 1.18995 1.29697 1.22278 0.89091 1.03484 0.87765 1.21898 1.01060 0.97234 0.96287 1.21576 0.96527 0.97907 0.98435 1.21753 0.97016 0.98596 0.94122 0.95084 1.21210 0.87888 0.93292 0.92518 0.94490 1.22668 0.96710 0.94665 1.01082 1.22882 0.98068 0.97325 0.99232 1.21166 0.95543 0.87427 0.90567 1.44716 1.20399 1.34016 1.34373 1.19080 1.01018 1.16729 0.98754 0.91314 1.25534 1.02641 1.01199 0.95803 1.70122 1.40308 1.42494 1.06257 0.85431 0.80126 0.78866 0.76688 1.21429 1.22195 1.19689 1.21404 0.94504 0.84283 0.98181 0.90012 0.88103 0.93276 0.80858 0.78351 0.80931 0.88340 0.88844 0.93438 0.87112 0.90694 0.89515 0.90574 0.88304 0.91680 0.90177 0.95386 0.99499 0.94810 0.93789 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.71 71.24 0.69 -3.09 16 2 C -0.01 -0.27 5.95 -19.40 -0.12 -0.38 16 3 C -0.17 -2.86 9.81 22.32 0.22 -2.64 16 4 C 0.12 1.89 11.17 84.69 0.95 2.83 16 5 N -0.50 -10.32 10.35 -194.76 -2.01 -12.33 16 6 C 0.14 3.11 8.62 85.04 0.73 3.84 16 7 C -0.19 -5.58 4.89 -20.00 -0.10 -5.68 16 8 C 0.55 20.75 6.62 86.78 0.57 21.32 16 9 O -0.58 -28.80 14.71 -3.89 -0.06 -28.86 16 10 N -0.60 -19.56 2.97 -822.35 -2.44 -22.00 16 11 C 0.09 1.99 5.58 86.36 0.48 2.47 16 12 C -0.13 -2.46 6.08 30.67 0.19 -2.27 16 13 C -0.11 -2.44 4.93 30.62 0.15 -2.29 16 14 C -0.09 -3.29 2.11 -10.72 -0.02 -3.32 16 15 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16 16 C 0.16 6.09 2.94 45.34 0.13 6.22 16 17 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 18 C -0.11 -3.46 5.24 31.78 0.17 -3.29 16 19 C -0.14 -4.91 7.08 31.99 0.23 -4.68 16 20 C 0.18 8.98 5.41 86.86 0.47 9.45 16 21 N -0.61 -31.30 2.49 -668.24 -1.67 -32.96 16 22 C -0.23 -13.09 9.82 84.03 0.82 -12.26 16 23 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 24 C -0.06 -3.50 5.47 84.86 0.46 -3.03 16 25 N -0.94 -60.08 10.57 21.65 0.23 -59.85 16 26 Si 0.96 49.10 29.55 68.60 2.03 51.12 16 27 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 28 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 29 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 30 C 0.14 5.38 5.27 86.36 0.46 5.83 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 2.20 8.11 -2.39 -0.02 2.18 16 33 H 0.05 1.88 5.86 -2.39 -0.01 1.87 16 34 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 35 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.17 3.31 7.39 -2.91 -0.02 3.29 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 1.77 4.72 -2.39 -0.01 1.75 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.09 1.64 7.21 -2.39 -0.02 1.63 16 43 H 0.08 2.18 5.41 -2.38 -0.01 2.17 16 44 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 46 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.03 1.61 6.92 -2.39 -0.02 1.59 16 48 H -0.01 -0.74 8.06 -2.38 -0.02 -0.76 16 49 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 50 H 0.04 2.35 6.70 -2.39 -0.02 2.33 16 51 H 0.07 2.63 5.85 -2.39 -0.01 2.62 16 Total: -1.00 -82.56 388.42 3.49 -79.08 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.92 Total: 16.76 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 6.49 Total: 9.04 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -5.90 Total: -127.14 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.06 Total: -28.86 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.03 Total: 51.12 kcal Total: -82.56 3.49 -79.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963273827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.890 kcal (2) G-P(sol) polarization free energy of solvation -82.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds