Wall clock time and date at job start Wed Apr 1 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38353 * 120.34925 * 2 1 4 4 N 1.31926 * 121.07926 * 179.97438 * 3 2 1 5 5 C 1.31699 * 121.88161 * 359.68767 * 4 3 2 6 6 C 1.39523 * 120.56089 * 0.57675 * 5 4 3 7 7 C 1.47841 * 120.55711 * 179.73337 * 6 5 4 8 8 O 1.21556 * 120.00085 * 36.90727 * 7 6 5 9 9 N 1.34773 * 120.00349 * 216.91313 * 7 6 5 10 10 C 1.46930 * 120.62676 * 4.89455 * 9 7 6 11 11 C 1.53196 * 108.77443 * 126.37450 * 10 9 7 12 12 C 1.53038 * 109.31227 * 54.63163 * 11 10 9 13 13 C 1.53042 * 109.54316 * 298.63735 * 12 11 10 14 14 H 1.08991 * 109.52184 * 301.39726 * 13 12 11 15 15 C 1.53001 * 109.49835 * 181.31354 * 13 12 11 16 16 H 1.08997 * 109.86842 * 182.19000 * 15 13 12 17 17 C 1.54319 * 110.01321 * 303.28778 * 15 13 12 18 18 C 1.55158 * 102.94084 * 141.68116 * 17 15 13 19 19 C 1.55126 * 101.48794 * 324.33409 * 18 17 15 20 20 N 1.47018 * 109.88189 * 61.17600 * 15 13 12 21 21 C 1.36940 * 125.64867 * 61.44414 * 20 15 13 22 22 H 1.07999 * 119.99729 * 14.91339 * 21 20 15 23 23 C 1.38814 * 120.00250 * 194.90746 * 21 20 15 24 24 N 1.31623 * 119.99681 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00117 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46809 * 180.02562 * 25 23 21 27 27 H 1.48497 * 109.46998 * 300.00129 * 25 23 21 28 28 H 1.48501 * 109.47128 * 60.00588 * 25 23 21 29 29 C 1.46922 * 120.63621 * 184.88044 * 9 7 6 30 30 C 1.38359 * 120.34935 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46920 * 270.01982 * 1 2 3 32 32 H 1.09003 * 109.47124 * 30.01862 * 1 2 3 33 33 H 1.09000 * 109.47770 * 150.02051 * 1 2 3 34 34 H 1.07994 * 119.46090 * 359.97438 * 3 2 1 35 35 H 1.07995 * 119.71961 * 180.28977 * 5 4 3 36 36 H 1.09000 * 109.59008 * 246.16094 * 10 9 7 37 37 H 1.08996 * 109.58639 * 6.44865 * 10 9 7 38 38 H 1.08994 * 109.49884 * 174.58880 * 11 10 9 39 39 H 1.09002 * 109.49645 * 294.65463 * 11 10 9 40 40 H 1.09002 * 109.45894 * 178.61150 * 12 11 10 41 41 H 1.09005 * 109.45853 * 58.66065 * 12 11 10 42 42 H 1.08994 * 110.72185 * 260.04942 * 17 15 13 43 43 H 1.09003 * 110.72233 * 23.32194 * 17 15 13 44 44 H 1.08998 * 111.00015 * 82.57654 * 18 17 15 45 45 H 1.09000 * 111.00094 * 206.38688 * 18 17 15 46 46 H 1.08998 * 110.49724 * 278.45432 * 19 18 17 47 47 H 1.08993 * 110.34454 * 156.06088 * 19 18 17 48 48 H 0.96999 * 120.00201 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.59058 * 113.83465 * 29 9 7 50 50 H 1.09002 * 109.58371 * 353.41111 * 29 9 7 51 51 H 1.08003 * 120.85051 * 0.03747 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5251 1.2107 0.0005 5 6 4.2349 0.1014 0.0071 6 6 3.6053 -1.1437 0.0018 7 6 4.4022 -2.3889 0.0033 8 8 5.4358 -2.4483 0.6403 9 7 3.9828 -3.4583 -0.7017 10 6 2.7945 -3.3690 -1.5611 11 6 3.1695 -3.8360 -2.9711 12 6 3.7858 -5.2347 -2.8938 13 6 5.0591 -5.1870 -2.0462 14 1 5.7640 -4.4823 -2.4871 15 6 5.6921 -6.5790 -1.9966 16 1 6.5784 -6.5606 -1.3625 17 6 4.6755 -7.6023 -1.4481 18 6 4.9524 -8.8630 -2.3092 19 6 5.2956 -8.2295 -3.6830 20 7 6.0571 -7.0109 -3.3537 21 6 6.9518 -6.3819 -4.1778 22 1 7.6299 -5.6438 -3.7756 23 6 6.9872 -6.6930 -5.5302 24 7 6.1605 -7.5922 -6.0205 25 14 8.2082 -5.8354 -6.6542 26 1 8.0441 -6.3413 -8.0408 27 1 7.9603 -4.3715 -6.6292 28 1 9.5902 -6.1116 -6.1863 29 6 4.7053 -4.7353 -0.6257 30 6 2.2060 -1.1940 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6629 2.1274 -0.0004 35 1 5.3135 0.1559 0.0121 36 1 2.0062 -4.0076 -1.1623 37 1 2.4458 -2.3369 -1.5964 38 1 2.2757 -3.8662 -3.5942 39 1 3.8914 -3.1434 -3.4038 40 1 4.0310 -5.5795 -3.8984 41 1 3.0720 -5.9214 -2.4386 42 1 4.8639 -7.8061 -0.3941 43 1 3.6548 -7.2499 -1.5973 44 1 5.7963 -9.4283 -1.9140 45 1 4.0637 -9.4902 -2.3805 46 1 4.3844 -7.9730 -4.2233 47 1 5.9079 -8.9118 -4.2725 48 1 6.1850 -7.8094 -6.9655 49 1 4.0730 -5.4853 -0.1505 50 1 5.6190 -4.6042 -0.0458 51 1 1.6857 -2.1404 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963276678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:16 Heat of formation + Delta-G solvation = 8.991062 kcal Electronic energy + Delta-G solvation = -31109.085870 eV Core-core repulsion = 27201.085023 eV Total energy + Delta-G solvation = -3908.000847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.04479 -40.73944 -39.64441 -37.84167 -35.00643 -34.56476 -34.02202 -33.01649 -32.31613 -31.18706 -28.39004 -28.05663 -27.04684 -26.46940 -24.89606 -24.26665 -23.34688 -22.56705 -21.87753 -20.54674 -19.78324 -18.68972 -18.30641 -18.02493 -17.65968 -17.05164 -16.80147 -16.43576 -15.98264 -15.72356 -15.58087 -15.34739 -15.14275 -14.66055 -14.51928 -14.35120 -14.20548 -14.05771 -13.85760 -13.60270 -13.55652 -13.41276 -13.25618 -13.15998 -12.89664 -12.80002 -12.74366 -12.43176 -12.06946 -12.01784 -11.87034 -11.75565 -11.60255 -11.47056 -11.34132 -11.19577 -10.92568 -10.71764 -10.63828 -10.45367 -9.99276 -9.67201 -8.74206 -7.85674 -5.19550 -0.33920 0.12092 1.41362 1.42177 1.48711 1.55899 1.88913 2.47826 2.69463 3.20705 3.32353 3.49513 3.66149 3.70320 3.77396 3.83625 3.88325 3.93130 4.04762 4.11240 4.19962 4.28666 4.29844 4.36033 4.41648 4.50852 4.53527 4.55015 4.74004 4.75953 4.79225 4.82170 4.84947 4.88864 4.92032 4.94717 5.09842 5.17234 5.20568 5.24047 5.26222 5.30476 5.42352 5.48953 5.50802 5.59292 5.62112 5.67682 5.72593 5.84580 6.26574 6.28499 6.82691 6.96487 7.14524 7.83123 8.49790 9.24639 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003014 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.088662 B = 9289.034621 C = 9964.871324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.132 4.132 3 C 0.111 3.889 4 N -0.505 5.505 5 C 0.126 3.874 6 C -0.186 4.186 7 C 0.558 3.442 8 O -0.581 6.581 9 N -0.597 5.597 10 C 0.099 3.901 11 C -0.130 4.130 12 C -0.096 4.096 13 C -0.093 4.093 14 H 0.026 0.974 15 C 0.158 3.842 16 H 0.019 0.981 17 C -0.116 4.116 18 C -0.137 4.137 19 C 0.180 3.820 20 N -0.607 5.607 21 C -0.230 4.230 22 H 0.061 0.939 23 C -0.053 4.053 24 N -0.941 5.941 25 Si 0.961 3.039 26 H -0.290 1.290 27 H -0.284 1.284 28 H -0.282 1.282 29 C 0.126 3.874 30 C -0.047 4.047 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.190 0.810 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.085 0.915 46 H 0.002 0.998 47 H 0.026 0.974 48 H 0.246 0.754 49 H 0.099 0.901 50 H 0.068 0.932 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.704 11.208 13.448 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.046 4.046 4 N -0.213 5.213 5 C -0.031 4.031 6 C -0.191 4.191 7 C 0.347 3.653 8 O -0.462 6.462 9 N -0.327 5.327 10 C -0.022 4.022 11 C -0.168 4.168 12 C -0.133 4.133 13 C -0.115 4.115 14 H 0.044 0.956 15 C 0.050 3.950 16 H 0.036 0.964 17 C -0.153 4.153 18 C -0.175 4.175 19 C 0.055 3.945 20 N -0.331 5.331 21 C -0.359 4.359 22 H 0.079 0.921 23 C -0.247 4.247 24 N -0.589 5.589 25 Si 0.790 3.210 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.208 1.208 29 C 0.003 3.997 30 C -0.072 4.072 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.206 0.794 35 H 0.166 0.834 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.020 0.980 47 H 0.045 0.955 48 H 0.056 0.944 49 H 0.117 0.883 50 H 0.086 0.914 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.655 11.943 13.542 25.253 hybrid contribution 1.375 -0.445 -1.348 1.976 sum -16.280 11.499 12.194 23.366 Atomic orbital electron populations 1.20851 0.86630 1.05014 1.04055 1.21281 0.99789 0.92621 0.99715 1.23538 0.89191 0.99649 0.92216 1.67776 1.09654 1.30530 1.13331 1.22787 1.00550 0.86739 0.93027 1.20807 0.95801 0.94013 1.08453 1.18542 0.84282 0.83515 0.78999 1.90762 1.25823 1.83710 1.45864 1.48125 1.29647 1.10767 1.44194 1.22442 0.86631 1.03977 0.89129 1.21907 1.01324 0.96445 0.97161 1.21363 0.95769 0.96710 0.99507 1.21724 0.97333 0.97714 0.94696 0.95576 1.21095 0.94860 0.92616 0.86379 0.96351 1.22689 0.99144 0.94119 0.99360 1.22919 1.01092 0.97271 0.96240 1.21234 0.93152 0.87189 0.92927 1.44646 1.47359 1.27808 1.13248 1.19066 1.10107 1.17694 0.89066 0.92096 1.25473 1.00971 1.00554 0.97735 1.70102 1.40556 1.35803 1.12433 0.85422 0.79081 0.78157 0.78311 1.21625 1.21074 1.20832 1.21657 0.97386 0.84089 0.96544 1.22120 0.91209 1.00793 0.93124 0.89433 0.89351 0.89635 0.79366 0.83376 0.87335 0.87746 0.88603 0.94483 0.94552 0.90085 0.89303 0.89395 0.92391 0.89656 0.97984 0.95506 0.94437 0.88267 0.91377 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.03 71.23 0.71 0.26 16 2 C -0.13 -1.58 5.89 -19.81 -0.12 -1.69 16 3 C 0.11 1.68 10.85 84.71 0.92 2.60 16 4 N -0.51 -11.48 10.35 -194.76 -2.01 -13.50 16 5 C 0.13 3.21 10.79 85.02 0.92 4.13 16 6 C -0.19 -4.37 5.26 -19.99 -0.11 -4.47 16 7 C 0.56 16.51 7.39 86.79 0.64 17.15 16 8 O -0.58 -22.06 16.30 -3.89 -0.06 -22.13 16 9 N -0.60 -15.53 2.97 -822.31 -2.44 -17.97 16 10 C 0.10 1.86 4.86 86.36 0.42 2.28 16 11 C -0.13 -3.29 6.08 30.67 0.19 -3.10 16 12 C -0.10 -3.10 4.72 30.62 0.14 -2.96 16 13 C -0.09 -3.33 2.12 -10.71 -0.02 -3.35 16 14 H 0.03 1.15 7.95 -2.39 -0.02 1.13 16 15 C 0.16 6.19 2.91 45.34 0.13 6.33 16 16 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 17 C -0.12 -3.47 5.17 31.78 0.16 -3.30 16 18 C -0.14 -4.71 7.10 32.06 0.23 -4.49 16 19 C 0.18 8.54 5.42 86.93 0.47 9.01 16 20 N -0.61 -30.20 2.42 -667.86 -1.61 -31.82 16 21 C -0.23 -12.98 9.78 84.03 0.82 -12.15 16 22 H 0.06 3.48 7.83 -2.91 -0.02 3.46 16 23 C -0.05 -3.05 5.47 84.86 0.46 -2.59 16 24 N -0.94 -55.87 10.58 21.65 0.23 -55.64 16 25 Si 0.96 46.93 29.55 68.60 2.03 48.95 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 29 C 0.13 3.65 5.61 86.36 0.48 4.14 16 30 C -0.05 -0.71 7.16 22.73 0.16 -0.55 16 31 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.09 0.16 8.09 -2.39 -0.02 0.14 16 33 H 0.08 0.20 8.09 -2.39 -0.02 0.18 16 34 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.15 4.02 8.03 -2.91 -0.02 3.99 16 36 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.10 1.62 4.47 -2.39 -0.01 1.61 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.04 1.56 7.62 -2.39 -0.02 1.54 16 41 H 0.08 2.19 5.99 -2.38 -0.01 2.18 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.09 2.30 5.51 -2.39 -0.01 2.29 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.00 0.11 8.06 -2.39 -0.02 0.09 16 47 H 0.03 1.47 6.93 -2.39 -0.02 1.45 16 48 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 49 H 0.10 2.29 7.14 -2.39 -0.02 2.27 16 50 H 0.07 2.29 6.99 -2.39 -0.02 2.28 16 51 H 0.17 1.68 6.29 -2.91 -0.02 1.66 16 Total: -1.00 -76.42 390.57 3.67 -72.75 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.92 Total: 12.13 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.63 Total: 7.22 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -5.84 Total: -118.92 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -76.42 3.67 -72.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.742 kcal (2) G-P(sol) polarization free energy of solvation -76.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds