Wall clock time and date at job start Wed Apr 1 2020 02:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38359 * 120.34838 * 2 1 4 4 N 1.31924 * 121.08207 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87801 * 359.97438 * 4 3 2 6 6 C 1.39526 * 120.56795 * 0.02939 * 5 4 3 7 7 C 1.47841 * 120.55891 * 179.97438 * 6 5 4 8 8 O 1.21547 * 119.99717 * 147.84873 * 7 6 5 9 9 N 1.34777 * 119.99938 * 327.85248 * 7 6 5 10 10 C 1.46925 * 120.62905 * 1.39662 * 9 7 6 11 11 C 1.53198 * 108.77661 * 233.63258 * 10 9 7 12 12 C 1.53042 * 109.31105 * 305.37140 * 11 10 9 13 13 C 1.53031 * 109.53977 * 61.36249 * 12 11 10 14 14 H 1.08999 * 109.52664 * 58.60262 * 13 12 11 15 15 C 1.53005 * 109.49699 * 178.68003 * 13 12 11 16 16 H 1.09005 * 109.87171 * 54.50013 * 15 13 12 17 17 C 1.54330 * 110.00899 * 175.59195 * 15 13 12 18 18 C 1.55447 * 102.96384 * 141.68572 * 17 15 13 19 19 C 1.54900 * 101.45337 * 324.51617 * 18 17 15 20 20 N 1.47022 * 109.88535 * 293.47847 * 15 13 12 21 21 C 1.36933 * 125.64642 * 61.50761 * 20 15 13 22 22 H 1.08001 * 120.00134 * 40.36145 * 21 20 15 23 23 C 1.38812 * 120.00085 * 220.36573 * 21 20 15 24 24 N 1.31617 * 120.00149 * 186.18635 * 23 21 20 25 25 Si 1.86798 * 119.99862 * 6.17908 * 23 21 20 26 26 H 1.48501 * 109.47113 * 56.64778 * 25 23 21 27 27 H 1.48497 * 109.47297 * 176.64912 * 25 23 21 28 28 H 1.48502 * 109.47078 * 296.64708 * 25 23 21 29 29 C 1.46923 * 120.62998 * 181.42748 * 9 7 6 30 30 C 1.38354 * 120.35175 * 180.29585 * 2 1 3 31 31 H 1.08995 * 109.47330 * 90.00741 * 1 2 3 32 32 H 1.09005 * 109.47117 * 210.00080 * 1 2 3 33 33 H 1.09006 * 109.47479 * 329.99985 * 1 2 3 34 34 H 1.08003 * 119.45655 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.71502 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.59249 * 353.42481 * 10 9 7 37 37 H 1.09003 * 109.58539 * 113.84762 * 10 9 7 38 38 H 1.09000 * 109.49158 * 65.32052 * 11 10 9 39 39 H 1.09000 * 109.49933 * 185.38178 * 11 10 9 40 40 H 1.09005 * 109.45838 * 301.34069 * 12 11 10 41 41 H 1.09001 * 109.45701 * 181.38463 * 12 11 10 42 42 H 1.09003 * 110.71628 * 260.04459 * 17 15 13 43 43 H 1.08995 * 110.71973 * 23.32071 * 17 15 13 44 44 H 1.09003 * 111.11727 * 206.46005 * 18 17 15 45 45 H 1.09006 * 111.01318 * 82.52412 * 18 17 15 46 46 H 1.08999 * 110.37097 * 278.11209 * 19 18 17 47 47 H 1.09000 * 110.36976 * 155.90112 * 19 18 17 48 48 H 0.97003 * 120.00076 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58629 * 6.57812 * 29 9 7 50 50 H 1.09001 * 109.69899 * 246.22168 * 29 9 7 51 51 H 1.08004 * 120.85499 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2109 -0.0005 5 6 4.2349 0.1016 -0.0005 6 6 3.6054 -1.1436 -0.0006 7 6 4.4023 -2.3888 -0.0012 8 8 3.9795 -3.3812 0.5588 9 7 5.5978 -2.4235 -0.6227 10 6 6.1360 -1.2235 -1.2777 11 6 6.4898 -1.5697 -2.7275 12 6 7.4357 -2.7728 -2.7441 13 6 6.7381 -3.9810 -2.1153 14 1 5.8260 -4.2039 -2.6689 15 6 7.6725 -5.1917 -2.1622 16 1 8.6246 -4.9432 -1.6932 17 6 7.0245 -6.3875 -1.4329 18 6 7.4348 -7.5988 -2.3164 19 6 7.3925 -6.9744 -3.7333 20 7 7.8935 -5.5991 -3.5575 21 6 8.4697 -4.8288 -4.5320 22 1 9.3251 -4.2124 -4.2979 23 6 7.9543 -4.8401 -5.8209 24 7 8.5784 -4.1970 -6.7849 25 14 6.3752 -5.7683 -6.1872 26 1 5.2902 -5.2662 -5.3064 27 1 5.9963 -5.5592 -7.6077 28 1 6.5838 -7.2175 -5.9388 29 6 6.3871 -3.6621 -0.6587 30 6 2.2061 -1.1939 -0.0062 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6628 2.1275 -0.0004 35 1 5.3135 0.1562 -0.0014 36 1 5.3866 -0.4321 -1.2635 37 1 7.0314 -0.8910 -0.7525 38 1 5.5799 -1.8147 -3.2754 39 1 6.9783 -0.7157 -3.1967 40 1 8.3347 -2.5357 -2.1751 41 1 7.7085 -3.0059 -3.7733 42 1 7.4291 -6.4902 -0.4259 43 1 5.9402 -6.2805 -1.4049 44 1 6.7150 -8.4123 -2.2263 45 1 8.4403 -7.9398 -2.0696 46 1 6.3703 -6.9602 -4.1114 47 1 8.0395 -7.5299 -4.4122 48 1 8.2181 -4.2046 -7.6854 49 1 5.8033 -4.4798 -0.2361 50 1 7.3030 -3.5310 -0.0824 51 1 1.6859 -2.1404 -0.0115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963276679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:21 Heat of formation + Delta-G solvation = 39.627746 kcal Electronic energy + Delta-G solvation = -31267.796050 eV Core-core repulsion = 27361.123709 eV Total energy + Delta-G solvation = -3906.672340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14290 -39.59829 -38.28225 -36.69274 -34.13565 -33.18519 -32.75277 -31.98786 -31.18402 -29.97692 -27.93946 -26.99841 -25.86403 -24.52582 -23.96117 -22.95921 -22.47136 -21.09647 -20.27238 -19.28357 -19.10004 -17.68109 -17.23508 -16.86238 -16.56433 -15.79117 -15.44075 -15.32959 -14.93270 -14.41575 -14.33223 -14.05835 -13.70703 -13.47846 -13.40347 -13.30321 -13.16455 -12.99784 -12.83419 -12.74538 -12.59257 -12.42470 -12.25217 -11.97478 -11.55440 -11.16263 -10.99137 -10.94638 -10.83920 -10.56448 -10.45763 -10.29207 -10.14684 -10.04736 -10.01299 -9.82150 -9.62662 -9.61714 -9.46175 -9.11714 -8.62675 -8.39007 -6.76923 -6.01750 -3.51387 0.45450 0.89313 2.66271 2.95022 3.32966 3.43642 3.45730 3.51468 4.03355 4.28759 4.44407 4.49020 4.54759 4.63196 4.77222 4.91044 4.95210 5.13771 5.15926 5.21531 5.23670 5.28552 5.34851 5.35868 5.49650 5.54692 5.57952 5.60245 5.67860 5.74227 5.75523 5.84442 5.87429 5.96639 6.09230 6.11712 6.21056 6.25645 6.26727 6.32125 6.37383 6.44145 6.57584 6.67926 6.76564 6.82543 6.84490 7.10945 7.39093 7.40588 7.56039 7.96034 8.09356 8.31716 8.81090 9.61668 10.23536 11.12961 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.003234 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.040150 B = 8655.379125 C = 9108.301661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.483 5.483 5 C 0.109 3.891 6 C -0.172 4.172 7 C 0.560 3.440 8 O -0.540 6.540 9 N -0.594 5.594 10 C 0.074 3.926 11 C -0.132 4.132 12 C -0.127 4.127 13 C -0.100 4.100 14 H 0.066 0.934 15 C 0.167 3.833 16 H 0.043 0.957 17 C -0.131 4.131 18 C -0.133 4.133 19 C 0.114 3.886 20 N -0.602 5.602 21 C -0.239 4.239 22 H 0.085 0.915 23 C 0.036 3.964 24 N -0.910 5.910 25 Si 0.891 3.109 26 H -0.280 1.280 27 H -0.306 1.306 28 H -0.273 1.273 29 C 0.114 3.886 30 C -0.024 4.024 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.020 0.980 47 H 0.053 0.947 48 H 0.265 0.735 49 H 0.090 0.910 50 H 0.067 0.933 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 7.883 14.048 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.043 4.043 4 N -0.190 5.190 5 C -0.048 4.048 6 C -0.178 4.178 7 C 0.347 3.653 8 O -0.419 6.419 9 N -0.326 5.326 10 C -0.048 4.048 11 C -0.170 4.170 12 C -0.164 4.164 13 C -0.122 4.122 14 H 0.085 0.915 15 C 0.060 3.940 16 H 0.061 0.939 17 C -0.169 4.169 18 C -0.172 4.172 19 C -0.010 4.010 20 N -0.328 5.328 21 C -0.367 4.367 22 H 0.102 0.898 23 C -0.165 4.165 24 N -0.551 5.551 25 Si 0.722 3.278 26 H -0.206 1.206 27 H -0.233 1.233 28 H -0.199 1.199 29 C -0.008 4.008 30 C -0.050 4.050 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.176 0.824 35 H 0.195 0.805 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.108 0.892 50 H 0.085 0.915 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.991 8.248 14.076 19.671 hybrid contribution -1.347 -1.223 -0.483 1.882 sum -12.338 7.025 13.593 19.655 Atomic orbital electron populations 1.20735 0.89623 1.03400 1.02933 1.20920 0.97993 0.93743 1.02012 1.22895 0.90029 0.97617 0.93722 1.67772 1.08028 1.30793 1.12445 1.23609 1.01152 0.86749 0.93243 1.21015 0.95171 0.95194 1.06371 1.18059 0.80871 0.87273 0.79050 1.90764 1.70285 1.35647 1.45154 1.48031 1.18658 1.12857 1.53026 1.22745 0.99558 0.87496 0.94970 1.21934 1.00874 1.00064 0.94171 1.21911 0.96169 0.92037 1.06253 1.21936 0.99892 0.97282 0.93043 0.91535 1.21018 0.94849 0.91012 0.87107 0.93923 1.22721 1.00360 0.95726 0.98118 1.22782 1.00757 0.96749 0.96902 1.22061 0.96909 0.87248 0.94799 1.44712 1.71127 1.10026 1.06911 1.18398 1.08787 1.21655 0.87857 0.89798 1.25512 0.97388 0.96997 0.96614 1.69734 1.40111 1.44020 1.01282 0.86913 0.84965 0.80427 0.75486 1.20594 1.23348 1.19914 1.21901 0.94758 0.85578 0.98536 1.21574 0.92294 0.98966 0.92185 0.90603 0.91035 0.90912 0.82357 0.80475 0.88348 0.90674 0.92066 0.90864 0.93108 0.86173 0.91723 0.91687 0.92079 0.91477 0.96289 0.92851 0.92552 0.89206 0.91512 0.83895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.03 36.00 0.36 -0.30 16 2 C -0.14 -1.32 5.89 -104.54 -0.62 -1.94 16 3 C 0.11 1.07 10.85 -17.47 -0.19 0.88 16 4 N -0.48 -5.47 10.35 -13.36 -0.14 -5.61 16 5 C 0.11 1.25 8.64 -17.13 -0.15 1.10 16 6 C -0.17 -2.20 5.54 -104.82 -0.58 -2.78 16 7 C 0.56 8.53 7.47 -12.33 -0.09 8.43 16 8 O -0.54 -9.78 16.24 5.32 0.09 -9.69 16 9 N -0.59 -8.57 2.97 -173.88 -0.52 -9.08 16 10 C 0.07 0.92 4.91 -3.71 -0.02 0.90 16 11 C -0.13 -1.97 6.08 -26.61 -0.16 -2.14 16 12 C -0.13 -2.26 4.82 -26.69 -0.13 -2.39 16 13 C -0.10 -1.79 1.97 -90.50 -0.18 -1.97 16 14 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.17 3.13 2.81 -66.95 -0.19 2.94 16 16 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.13 -2.13 5.44 -24.74 -0.13 -2.26 16 18 C -0.13 -2.23 7.11 -24.43 -0.17 -2.41 16 19 C 0.11 2.43 4.66 -2.54 -0.01 2.41 16 20 N -0.60 -13.65 2.68 -162.57 -0.44 -14.09 16 21 C -0.24 -6.25 7.37 -15.06 -0.11 -6.36 16 22 H 0.08 2.37 7.92 -52.49 -0.42 1.95 16 23 C 0.04 0.98 5.50 -17.43 -0.10 0.89 16 24 N -0.91 -26.73 13.97 55.49 0.78 -25.96 16 25 Si 0.89 22.30 25.00 -169.99 -4.25 18.05 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.31 -7.80 7.11 56.52 0.40 -7.40 16 28 H -0.27 -6.54 5.79 56.52 0.33 -6.21 16 29 C 0.11 1.74 5.28 -3.71 -0.02 1.73 16 30 C -0.02 -0.27 9.42 -38.87 -0.37 -0.64 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.18 1.74 5.29 -52.49 -0.28 1.46 16 36 H 0.10 1.09 3.55 -52.96 -0.19 0.90 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.12 2.69 5.01 -51.93 -0.26 2.43 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.07 7.33 -51.93 -0.38 0.69 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.43 5.13 -51.93 -0.27 0.17 16 47 H 0.05 1.18 7.72 -51.93 -0.40 0.78 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.09 1.45 5.89 -51.93 -0.31 1.14 16 50 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.14 1.57 8.02 -52.48 -0.42 1.15 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -31.54 382.99 -9.60 -41.14 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.04 Total: 3.38 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.85 Total: -3.90 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.32 Total: -54.74 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.25 Total: 18.05 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.54 -9.60 -41.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.764 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds