Wall clock time and date at job start Wed Apr 1 2020 02:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38359 * 120.34838 * 2 1 4 4 N 1.31924 * 121.08207 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87801 * 359.97438 * 4 3 2 6 6 C 1.39526 * 120.56795 * 0.02939 * 5 4 3 7 7 C 1.47841 * 120.55891 * 179.97438 * 6 5 4 8 8 O 1.21547 * 119.99717 * 147.84873 * 7 6 5 9 9 N 1.34777 * 119.99938 * 327.85248 * 7 6 5 10 10 C 1.46925 * 120.62905 * 1.39662 * 9 7 6 11 11 C 1.53198 * 108.77661 * 233.63258 * 10 9 7 12 12 C 1.53042 * 109.31105 * 305.37140 * 11 10 9 13 13 C 1.53031 * 109.53977 * 61.36249 * 12 11 10 14 14 H 1.08999 * 109.52664 * 58.60262 * 13 12 11 15 15 C 1.53005 * 109.49699 * 178.68003 * 13 12 11 16 16 H 1.09005 * 109.87171 * 54.50013 * 15 13 12 17 17 C 1.54330 * 110.00899 * 175.59195 * 15 13 12 18 18 C 1.55447 * 102.96384 * 141.68572 * 17 15 13 19 19 C 1.54900 * 101.45337 * 324.51617 * 18 17 15 20 20 N 1.47022 * 109.88535 * 293.47847 * 15 13 12 21 21 C 1.36933 * 125.64642 * 61.50761 * 20 15 13 22 22 H 1.08001 * 120.00134 * 40.36145 * 21 20 15 23 23 C 1.38812 * 120.00085 * 220.36573 * 21 20 15 24 24 N 1.31617 * 120.00149 * 186.18635 * 23 21 20 25 25 Si 1.86798 * 119.99862 * 6.17908 * 23 21 20 26 26 H 1.48501 * 109.47113 * 56.64778 * 25 23 21 27 27 H 1.48497 * 109.47297 * 176.64912 * 25 23 21 28 28 H 1.48502 * 109.47078 * 296.64708 * 25 23 21 29 29 C 1.46923 * 120.62998 * 181.42748 * 9 7 6 30 30 C 1.38354 * 120.35175 * 180.29585 * 2 1 3 31 31 H 1.08995 * 109.47330 * 90.00741 * 1 2 3 32 32 H 1.09005 * 109.47117 * 210.00080 * 1 2 3 33 33 H 1.09006 * 109.47479 * 329.99985 * 1 2 3 34 34 H 1.08003 * 119.45655 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.71502 * 179.97438 * 5 4 3 36 36 H 1.08994 * 109.59249 * 353.42481 * 10 9 7 37 37 H 1.09003 * 109.58539 * 113.84762 * 10 9 7 38 38 H 1.09000 * 109.49158 * 65.32052 * 11 10 9 39 39 H 1.09000 * 109.49933 * 185.38178 * 11 10 9 40 40 H 1.09005 * 109.45838 * 301.34069 * 12 11 10 41 41 H 1.09001 * 109.45701 * 181.38463 * 12 11 10 42 42 H 1.09003 * 110.71628 * 260.04459 * 17 15 13 43 43 H 1.08995 * 110.71973 * 23.32071 * 17 15 13 44 44 H 1.09003 * 111.11727 * 206.46005 * 18 17 15 45 45 H 1.09006 * 111.01318 * 82.52412 * 18 17 15 46 46 H 1.08999 * 110.37097 * 278.11209 * 19 18 17 47 47 H 1.09000 * 110.36976 * 155.90112 * 19 18 17 48 48 H 0.97003 * 120.00076 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58629 * 6.57812 * 29 9 7 50 50 H 1.09001 * 109.69899 * 246.22168 * 29 9 7 51 51 H 1.08004 * 120.85499 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2109 -0.0005 5 6 4.2349 0.1016 -0.0005 6 6 3.6054 -1.1436 -0.0006 7 6 4.4023 -2.3888 -0.0012 8 8 3.9795 -3.3812 0.5588 9 7 5.5978 -2.4235 -0.6227 10 6 6.1360 -1.2235 -1.2777 11 6 6.4898 -1.5697 -2.7275 12 6 7.4357 -2.7728 -2.7441 13 6 6.7381 -3.9810 -2.1153 14 1 5.8260 -4.2039 -2.6689 15 6 7.6725 -5.1917 -2.1622 16 1 8.6246 -4.9432 -1.6932 17 6 7.0245 -6.3875 -1.4329 18 6 7.4348 -7.5988 -2.3164 19 6 7.3925 -6.9744 -3.7333 20 7 7.8935 -5.5991 -3.5575 21 6 8.4697 -4.8288 -4.5320 22 1 9.3251 -4.2124 -4.2979 23 6 7.9543 -4.8401 -5.8209 24 7 8.5784 -4.1970 -6.7849 25 14 6.3752 -5.7683 -6.1872 26 1 5.2902 -5.2662 -5.3064 27 1 5.9963 -5.5592 -7.6077 28 1 6.5838 -7.2175 -5.9388 29 6 6.3871 -3.6621 -0.6587 30 6 2.2061 -1.1939 -0.0062 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.6628 2.1275 -0.0004 35 1 5.3135 0.1562 -0.0014 36 1 5.3866 -0.4321 -1.2635 37 1 7.0314 -0.8910 -0.7525 38 1 5.5799 -1.8147 -3.2754 39 1 6.9783 -0.7157 -3.1967 40 1 8.3347 -2.5357 -2.1751 41 1 7.7085 -3.0059 -3.7733 42 1 7.4291 -6.4902 -0.4259 43 1 5.9402 -6.2805 -1.4049 44 1 6.7150 -8.4123 -2.2263 45 1 8.4403 -7.9398 -2.0696 46 1 6.3703 -6.9602 -4.1114 47 1 8.0395 -7.5299 -4.4122 48 1 8.2181 -4.2046 -7.6854 49 1 5.8033 -4.4798 -0.2361 50 1 7.3030 -3.5310 -0.0824 51 1 1.6859 -2.1404 -0.0115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963276679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:20 Heat of formation + Delta-G solvation = 20.357364 kcal Electronic energy + Delta-G solvation = -31268.631676 eV Core-core repulsion = 27361.123709 eV Total energy + Delta-G solvation = -3907.507967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.12635 -40.71214 -39.69306 -38.02502 -34.99470 -34.69658 -34.27253 -33.10099 -32.44953 -31.74978 -28.90621 -28.09450 -27.01252 -26.32069 -25.05024 -24.07796 -23.53649 -22.58713 -21.59082 -20.73342 -20.40355 -18.93126 -18.58625 -18.00369 -17.55546 -17.22121 -16.98362 -16.77802 -16.18956 -15.52638 -15.40857 -15.20411 -15.02827 -14.96772 -14.63626 -14.55077 -14.22518 -14.17407 -14.08622 -13.90330 -13.66434 -13.57028 -13.35256 -13.16102 -12.96432 -12.82788 -12.71710 -12.39447 -12.21416 -12.18794 -11.97287 -11.80434 -11.68088 -11.54464 -11.32702 -11.14468 -10.96364 -10.89567 -10.59171 -10.51225 -9.93138 -9.69176 -8.68384 -8.17234 -5.61346 -0.39509 0.08443 1.28581 1.33707 1.40688 1.56469 1.87116 2.39474 2.66445 3.12277 3.18160 3.29879 3.43041 3.69478 3.73821 3.78486 3.86898 3.89612 3.97268 4.06030 4.11336 4.12662 4.21549 4.22589 4.36300 4.43165 4.48321 4.56601 4.62226 4.70589 4.72889 4.76024 4.80079 4.83073 4.87588 4.88787 4.94835 5.00408 5.05743 5.12670 5.13204 5.19134 5.25815 5.31125 5.40511 5.48180 5.55570 5.61616 5.78785 5.94194 6.19767 6.25619 6.76021 6.85316 6.94450 7.54648 8.23169 9.01623 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.003234 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.040150 B = 8655.379125 C = 9108.301661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.116 3.884 4 N -0.497 5.497 5 C 0.108 3.892 6 C -0.192 4.192 7 C 0.559 3.441 8 O -0.576 6.576 9 N -0.596 5.596 10 C 0.081 3.919 11 C -0.128 4.128 12 C -0.123 4.123 13 C -0.090 4.090 14 H 0.030 0.970 15 C 0.160 3.840 16 H 0.049 0.951 17 C -0.122 4.122 18 C -0.120 4.120 19 C 0.104 3.896 20 N -0.619 5.619 21 C -0.207 4.207 22 H 0.057 0.943 23 C -0.016 4.016 24 N -0.955 5.955 25 Si 0.938 3.062 26 H -0.289 1.289 27 H -0.314 1.314 28 H -0.256 1.256 29 C 0.124 3.876 30 C -0.040 4.040 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.193 0.807 35 H 0.192 0.808 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.007 0.993 47 H 0.038 0.962 48 H 0.261 0.739 49 H 0.084 0.916 50 H 0.090 0.910 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 8.678 16.832 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C -0.041 4.041 4 N -0.205 5.205 5 C -0.049 4.049 6 C -0.197 4.197 7 C 0.348 3.652 8 O -0.457 6.457 9 N -0.327 5.327 10 C -0.040 4.040 11 C -0.166 4.166 12 C -0.160 4.160 13 C -0.112 4.112 14 H 0.049 0.951 15 C 0.054 3.946 16 H 0.067 0.933 17 C -0.160 4.160 18 C -0.158 4.158 19 C -0.021 4.021 20 N -0.344 5.344 21 C -0.337 4.337 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.600 5.600 25 Si 0.769 3.231 26 H -0.216 1.216 27 H -0.242 1.242 28 H -0.181 1.181 29 C 0.001 3.999 30 C -0.066 4.066 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.210 0.790 35 H 0.208 0.792 36 H 0.134 0.866 37 H 0.122 0.878 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.025 0.975 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.361 9.029 16.889 22.794 hybrid contribution -0.935 -1.403 -1.279 2.116 sum -13.295 7.627 15.610 21.877 Atomic orbital electron populations 1.20825 0.87238 1.04672 1.03820 1.21237 0.99622 0.92745 1.00315 1.23506 0.89608 0.99011 0.91928 1.67842 1.09104 1.30540 1.12992 1.23739 1.01849 0.86223 0.93072 1.20910 0.95572 0.94562 1.08672 1.18441 0.80756 0.87699 0.78318 1.90732 1.71001 1.37152 1.46836 1.48097 1.18585 1.13093 1.52890 1.22873 1.01220 0.87047 0.92879 1.21866 0.99184 0.99244 0.96307 1.21732 0.97503 0.93569 1.03225 1.21743 0.97909 0.96918 0.94591 0.95144 1.21220 0.95624 0.92738 0.85017 0.93313 1.22712 1.00128 0.93835 0.99329 1.22744 1.02487 0.97343 0.93275 1.22140 0.95562 0.86566 0.97787 1.44876 1.70890 1.10901 1.07782 1.18209 1.07135 1.19936 0.88398 0.92595 1.25967 0.99705 0.98639 0.96875 1.69841 1.41790 1.46889 1.01515 0.86145 0.82062 0.80511 0.74380 1.21599 1.24221 1.18079 1.21723 0.95710 0.86150 0.96307 1.21740 0.92116 0.99924 0.92811 0.89747 0.90837 0.88638 0.79027 0.79156 0.86639 0.87760 0.94332 0.89463 0.91836 0.91137 0.88299 0.91967 0.89408 0.90122 0.97535 0.94321 0.93029 0.89787 0.89217 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.03 71.23 0.71 -0.27 16 2 C -0.14 -2.19 5.89 -19.81 -0.12 -2.31 16 3 C 0.12 1.82 10.85 84.71 0.92 2.74 16 4 N -0.50 -10.01 10.35 -196.17 -2.03 -12.04 16 5 C 0.11 2.25 8.64 85.02 0.73 2.98 16 6 C -0.19 -4.71 5.54 -19.99 -0.11 -4.82 16 7 C 0.56 16.65 7.47 86.79 0.65 17.30 16 8 O -0.58 -20.79 16.24 -3.86 -0.06 -20.85 16 9 N -0.60 -16.47 2.97 -822.33 -2.44 -18.91 16 10 C 0.08 1.84 4.91 86.36 0.42 2.27 16 11 C -0.13 -3.79 6.08 30.67 0.19 -3.61 16 12 C -0.12 -4.45 4.82 30.62 0.15 -4.30 16 13 C -0.09 -3.22 1.97 -10.72 -0.02 -3.24 16 14 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 15 C 0.16 5.86 2.81 45.34 0.13 5.99 16 16 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 17 C -0.12 -3.65 5.44 31.89 0.17 -3.47 16 18 C -0.12 -3.70 7.11 32.09 0.23 -3.47 16 19 C 0.10 4.34 4.66 86.85 0.40 4.75 16 20 N -0.62 -28.32 2.68 -668.26 -1.79 -30.11 16 21 C -0.21 -11.25 7.37 84.03 0.62 -10.63 16 22 H 0.06 3.32 7.92 -2.91 -0.02 3.30 16 23 C -0.02 -0.91 5.50 84.86 0.47 -0.45 16 24 N -0.95 -58.77 13.97 21.65 0.30 -58.47 16 25 Si 0.94 47.71 25.00 68.60 1.71 49.42 16 26 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 27 H -0.31 -16.21 7.11 99.48 0.71 -15.51 16 28 H -0.26 -12.11 5.79 99.48 0.58 -11.54 16 29 C 0.12 3.60 5.28 86.36 0.46 4.05 16 30 C -0.04 -0.86 9.42 22.73 0.21 -0.65 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.67 8.10 -2.38 -0.02 0.65 16 33 H 0.09 0.46 8.09 -2.38 -0.02 0.45 16 34 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.19 3.25 5.29 -2.91 -0.02 3.23 16 36 H 0.12 2.32 3.55 -3.35 -0.01 2.31 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.07 3.31 5.01 -2.39 -0.01 3.30 16 42 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.06 1.91 7.33 -2.39 -0.02 1.90 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 46 H 0.01 0.31 5.13 -2.39 -0.01 0.30 16 47 H 0.04 1.70 7.72 -2.39 -0.02 1.69 16 48 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.08 2.59 5.89 -2.39 -0.01 2.58 16 50 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.14 3.05 8.02 -2.91 -0.02 3.02 16 Total: -1.00 -72.88 382.99 2.70 -70.18 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.80 Total: 17.95 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.22 Total: 2.84 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -5.96 Total: -119.54 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.71 Total: 49.42 kcal Total: -72.88 2.70 -70.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.536 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds