Wall clock time and date at job start Wed Apr 1 2020 02:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38348 * 120.35033 * 2 1 4 4 N 1.31923 * 121.07939 * 179.97438 * 3 2 1 5 5 C 1.31696 * 121.87939 * 359.74994 * 4 3 2 6 6 C 1.39519 * 120.56463 * 0.54100 * 5 4 3 7 7 C 1.47842 * 120.55359 * 179.72631 * 6 5 4 8 8 O 1.21554 * 119.99563 * 208.08710 * 7 6 5 9 9 N 1.34770 * 120.00367 * 28.09351 * 7 6 5 10 10 C 1.46927 * 120.63316 * 6.15560 * 9 7 6 11 11 C 1.53189 * 108.77568 * 126.41666 * 10 9 7 12 12 C 1.53041 * 109.31373 * 54.63260 * 11 10 9 13 13 C 1.53030 * 109.54263 * 298.63875 * 12 11 10 14 14 H 1.09005 * 109.49762 * 301.38297 * 13 12 11 15 15 C 1.52999 * 109.50331 * 181.31622 * 13 12 11 16 16 H 1.09008 * 109.87045 * 305.68702 * 15 13 12 17 17 C 1.54316 * 109.88847 * 184.51194 * 15 13 12 18 18 C 1.55153 * 102.94575 * 218.38901 * 17 15 13 19 19 C 1.54690 * 101.67777 * 35.33115 * 18 17 15 20 20 N 1.47023 * 109.88297 * 66.70127 * 15 13 12 21 21 C 1.36939 * 125.64426 * 298.32363 * 20 15 13 22 22 H 1.07996 * 120.00535 * 327.28761 * 21 20 15 23 23 C 1.38815 * 119.99410 * 147.28763 * 21 20 15 24 24 N 1.31620 * 120.00420 * 338.88865 * 23 21 20 25 25 Si 1.86804 * 120.00079 * 158.89178 * 23 21 20 26 26 H 1.48501 * 109.46685 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47112 * 240.00051 * 25 23 21 28 28 H 1.48502 * 109.47018 * 119.99580 * 25 23 21 29 29 C 1.46926 * 120.63047 * 186.18307 * 9 7 6 30 30 C 1.38359 * 120.34749 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47031 * 270.02335 * 1 2 3 32 32 H 1.09006 * 109.47038 * 30.01244 * 1 2 3 33 33 H 1.08997 * 109.47802 * 150.01872 * 1 2 3 34 34 H 1.08006 * 119.46103 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.71422 * 180.26509 * 5 4 3 36 36 H 1.08999 * 109.58391 * 6.62990 * 10 9 7 37 37 H 1.08995 * 109.70478 * 246.27304 * 10 9 7 38 38 H 1.09007 * 109.49962 * 294.68537 * 11 10 9 39 39 H 1.09002 * 109.50055 * 174.58871 * 11 10 9 40 40 H 1.08997 * 109.45975 * 178.61040 * 12 11 10 41 41 H 1.09009 * 109.44491 * 58.65191 * 12 11 10 42 42 H 1.09007 * 110.72132 * 336.75416 * 17 15 13 43 43 H 1.09003 * 110.71816 * 100.02001 * 17 15 13 44 44 H 1.08992 * 111.00569 * 153.57499 * 18 17 15 45 45 H 1.09006 * 111.00097 * 277.42928 * 18 17 15 46 46 H 1.08990 * 110.39388 * 204.36383 * 19 18 17 47 47 H 1.09003 * 110.23322 * 82.11027 * 19 18 17 48 48 H 0.97004 * 119.99723 * 358.89218 * 24 23 21 49 49 H 1.08997 * 109.59015 * 113.79296 * 29 9 7 50 50 H 1.09009 * 109.58590 * 353.36880 * 29 9 7 51 51 H 1.08008 * 120.85102 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 0.0005 5 6 4.2349 0.1013 0.0059 6 6 3.6053 -1.1437 0.0000 7 6 4.4023 -2.3889 0.0000 8 8 3.9497 -3.4001 -0.5002 9 7 5.6305 -2.4030 0.5546 10 6 6.1375 -1.2306 1.2807 11 6 6.5912 -1.6727 2.6755 12 6 7.6017 -2.8141 2.5409 13 6 6.9380 -4.0065 1.8484 14 1 6.0725 -4.3281 2.4277 15 6 7.9392 -5.1586 1.7437 16 1 8.8494 -4.8150 1.2521 17 6 7.3166 -6.3244 0.9471 18 6 7.8376 -7.5771 1.6998 19 6 7.8455 -7.0812 3.1650 20 7 8.2575 -5.6679 3.0857 21 6 8.8449 -4.9500 4.0931 22 1 9.5651 -4.1801 3.8587 23 6 8.5146 -5.2120 5.4157 24 7 7.3828 -5.8190 5.7036 25 14 9.6765 -4.7031 6.7870 26 1 10.8715 -4.0423 6.2034 27 1 10.0981 -5.9051 7.5503 28 1 8.9832 -3.7565 7.6974 29 6 6.4882 -3.5908 0.4442 30 6 2.2061 -1.1940 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6630 2.1275 -0.0004 35 1 5.3135 0.1558 0.0105 36 1 5.3456 -0.4872 1.3726 37 1 6.9814 -0.8008 0.7412 38 1 5.7287 -2.0160 3.2469 39 1 7.0577 -0.8324 3.1897 40 1 7.9448 -3.1140 3.5311 41 1 8.4526 -2.4775 1.9484 42 1 6.2281 -6.2780 0.9827 43 1 7.6703 -6.3191 -0.0840 44 1 7.1573 -8.4193 1.5743 45 1 8.8445 -7.8382 1.3738 46 1 8.5616 -7.6525 3.7555 47 1 6.8474 -7.1617 3.5957 48 1 6.7719 -6.0689 4.9927 49 1 7.3613 -3.3558 -0.1645 50 1 5.9277 -4.4047 -0.0159 51 1 1.6857 -2.1405 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963276680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:25 Heat of formation + Delta-G solvation = 28.476224 kcal Electronic energy + Delta-G solvation = -31128.193792 eV Core-core repulsion = 27221.037885 eV Total energy + Delta-G solvation = -3907.155907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.12175 -39.58494 -38.20604 -36.65332 -34.11997 -33.21716 -32.84493 -32.00316 -31.09734 -29.15247 -27.84920 -26.83877 -25.85827 -24.56442 -23.84529 -22.95717 -22.47142 -20.73948 -20.01669 -19.42010 -19.14905 -17.68568 -17.37490 -17.05723 -16.54454 -15.81139 -15.41800 -15.06919 -14.39872 -14.33796 -14.26289 -13.95476 -13.77600 -13.65848 -13.42214 -13.37190 -13.19487 -12.98775 -12.83977 -12.75075 -12.61106 -12.25425 -12.05776 -11.84149 -11.60275 -11.02923 -10.89184 -10.72477 -10.69374 -10.39058 -10.29649 -10.27320 -10.12887 -10.04482 -9.99129 -9.81895 -9.63193 -9.53127 -9.39060 -9.13012 -8.51661 -8.34570 -6.79089 -6.06665 -3.29205 0.44391 0.89717 2.68762 2.95304 3.46498 3.49906 3.53179 3.62148 4.02800 4.30527 4.44345 4.53013 4.55373 4.63676 4.78163 4.89838 5.12229 5.14317 5.22039 5.23847 5.27967 5.33167 5.35146 5.43984 5.49381 5.58026 5.63273 5.66411 5.75619 5.76938 5.80752 5.86563 5.90116 6.00492 6.16036 6.17291 6.25102 6.27164 6.28807 6.39131 6.47544 6.53455 6.59259 6.76065 6.86257 6.98085 7.10826 7.17507 7.32877 7.40895 7.55999 7.95661 8.10642 8.52697 9.03509 9.79498 10.44694 11.21471 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.003025 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.918482 B = 9254.672233 C =10131.644633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.115 3.885 4 N -0.484 5.484 5 C 0.113 3.887 6 C -0.174 4.174 7 C 0.560 3.440 8 O -0.539 6.539 9 N -0.596 5.596 10 C 0.084 3.916 11 C -0.133 4.133 12 C -0.124 4.124 13 C -0.097 4.097 14 H 0.067 0.933 15 C 0.166 3.834 16 H 0.034 0.966 17 C -0.129 4.129 18 C -0.137 4.137 19 C 0.139 3.861 20 N -0.591 5.591 21 C -0.327 4.327 22 H 0.058 0.942 23 C -0.021 4.021 24 N -0.914 5.914 25 Si 1.073 2.927 26 H -0.291 1.291 27 H -0.291 1.291 28 H -0.293 1.293 29 C 0.114 3.886 30 C -0.023 4.023 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.159 0.841 35 H 0.175 0.825 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.115 0.885 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.026 0.974 48 H 0.272 0.728 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 11.541 -11.883 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.042 4.042 4 N -0.192 5.192 5 C -0.044 4.044 6 C -0.179 4.179 7 C 0.348 3.652 8 O -0.417 6.417 9 N -0.328 5.328 10 C -0.039 4.039 11 C -0.171 4.171 12 C -0.161 4.161 13 C -0.118 4.118 14 H 0.085 0.915 15 C 0.058 3.942 16 H 0.051 0.949 17 C -0.167 4.167 18 C -0.175 4.175 19 C 0.014 3.986 20 N -0.316 5.316 21 C -0.456 4.456 22 H 0.075 0.925 23 C -0.225 4.225 24 N -0.554 5.554 25 Si 0.903 3.097 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.220 1.220 29 C -0.008 4.008 30 C -0.049 4.049 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.176 0.824 35 H 0.191 0.809 36 H 0.110 0.890 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.133 0.867 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.044 0.956 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.108 0.892 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.157 11.839 -10.414 17.752 hybrid contribution -0.678 -0.716 -1.575 1.858 sum -8.834 11.122 -11.989 18.587 Atomic orbital electron populations 1.20737 0.89606 1.03400 1.02944 1.20927 0.98012 0.93735 1.02071 1.22895 0.90026 0.97622 0.93666 1.67769 1.08027 1.30812 1.12545 1.23568 1.01121 0.86733 0.92998 1.21026 0.95160 0.95181 1.06532 1.18066 0.81067 0.87401 0.78699 1.90767 1.69979 1.34082 1.46850 1.48019 1.15248 1.16631 1.52862 1.22542 0.99515 0.87824 0.93984 1.21945 1.00532 0.99803 0.94792 1.21886 0.96051 0.92971 1.05225 1.21917 0.99538 0.97009 0.93328 0.91461 1.20989 0.93688 0.91114 0.88365 0.94865 1.22637 1.00143 0.95932 0.98010 1.22743 1.00065 0.96651 0.98072 1.21533 0.98013 0.86360 0.92693 1.44488 1.71345 1.05781 1.09969 1.19543 1.19668 1.20047 0.86311 0.92473 1.25983 0.98462 1.00025 0.98036 1.70706 1.07298 1.41041 1.36328 0.83391 0.74797 0.76160 0.75364 1.21708 1.21729 1.22018 1.21929 0.93094 0.86820 0.98942 1.21605 0.92347 0.98999 0.91938 0.90591 0.90930 0.91015 0.82360 0.80867 0.88964 0.90880 0.91857 0.91053 0.86673 0.93451 0.91742 0.92194 0.92240 0.92088 0.93857 0.95600 0.91562 0.91753 0.89187 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.03 36.01 0.36 -0.30 16 2 C -0.15 -1.34 5.89 -104.54 -0.62 -1.95 16 3 C 0.11 1.07 10.85 -17.47 -0.19 0.88 16 4 N -0.48 -5.50 10.35 -12.91 -0.13 -5.63 16 5 C 0.11 1.30 8.62 -17.13 -0.15 1.16 16 6 C -0.17 -2.25 5.51 -104.83 -0.58 -2.83 16 7 C 0.56 8.74 7.48 -12.33 -0.09 8.65 16 8 O -0.54 -10.03 16.16 5.32 0.09 -9.95 16 9 N -0.60 -8.82 2.97 -173.88 -0.52 -9.33 16 10 C 0.08 1.05 4.71 -3.71 -0.02 1.03 16 11 C -0.13 -1.98 6.08 -26.61 -0.16 -2.15 16 12 C -0.12 -2.24 4.77 -26.69 -0.13 -2.37 16 13 C -0.10 -1.79 1.96 -90.50 -0.18 -1.97 16 14 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.17 3.30 2.82 -66.96 -0.19 3.11 16 16 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 17 C -0.13 -2.26 5.43 -24.90 -0.14 -2.40 16 18 C -0.14 -2.49 7.07 -24.70 -0.17 -2.66 16 19 C 0.14 3.18 5.75 -2.65 -0.02 3.17 16 20 N -0.59 -14.11 2.85 -162.72 -0.46 -14.58 16 21 C -0.33 -8.53 7.06 -15.06 -0.11 -8.64 16 22 H 0.06 1.50 7.44 -52.49 -0.39 1.11 16 23 C -0.02 -0.58 5.23 -17.43 -0.09 -0.67 16 24 N -0.91 -26.77 13.25 55.49 0.74 -26.04 16 25 Si 1.07 24.66 29.97 -169.99 -5.09 19.56 16 26 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 C 0.11 1.82 5.29 -3.71 -0.02 1.80 16 30 C -0.02 -0.26 9.41 -38.87 -0.37 -0.63 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.17 1.74 5.27 -52.49 -0.28 1.46 16 36 H 0.09 1.04 4.05 -51.93 -0.21 0.83 16 37 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 38 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.12 2.55 4.88 -51.93 -0.25 2.30 16 41 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.06 1.15 7.31 -51.93 -0.38 0.77 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.65 6.58 -51.93 -0.34 0.30 16 48 H 0.27 8.06 5.87 -40.82 -0.24 7.82 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.09 1.53 5.86 -51.92 -0.30 1.23 16 51 H 0.14 1.62 7.97 -52.48 -0.42 1.20 16 LS Contribution 387.87 15.07 5.85 5.85 Total: -1.00 -31.61 387.87 -10.32 -41.93 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.94 Total: 4.97 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.84 Total: -6.78 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.38 Total: -55.58 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.09 Total: 19.56 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.61 -10.32 -41.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.410 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds