Wall clock time and date at job start Wed Apr 1 2020 02:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38348 * 120.35033 * 2 1 4 4 N 1.31923 * 121.07939 * 179.97438 * 3 2 1 5 5 C 1.31696 * 121.87939 * 359.74994 * 4 3 2 6 6 C 1.39519 * 120.56463 * 0.54100 * 5 4 3 7 7 C 1.47842 * 120.55359 * 179.72631 * 6 5 4 8 8 O 1.21554 * 119.99563 * 208.08710 * 7 6 5 9 9 N 1.34770 * 120.00367 * 28.09351 * 7 6 5 10 10 C 1.46927 * 120.63316 * 6.15560 * 9 7 6 11 11 C 1.53189 * 108.77568 * 126.41666 * 10 9 7 12 12 C 1.53041 * 109.31373 * 54.63260 * 11 10 9 13 13 C 1.53030 * 109.54263 * 298.63875 * 12 11 10 14 14 H 1.09005 * 109.49762 * 301.38297 * 13 12 11 15 15 C 1.52999 * 109.50331 * 181.31622 * 13 12 11 16 16 H 1.09008 * 109.87045 * 305.68702 * 15 13 12 17 17 C 1.54316 * 109.88847 * 184.51194 * 15 13 12 18 18 C 1.55153 * 102.94575 * 218.38901 * 17 15 13 19 19 C 1.54690 * 101.67777 * 35.33115 * 18 17 15 20 20 N 1.47023 * 109.88297 * 66.70127 * 15 13 12 21 21 C 1.36939 * 125.64426 * 298.32363 * 20 15 13 22 22 H 1.07996 * 120.00535 * 327.28761 * 21 20 15 23 23 C 1.38815 * 119.99410 * 147.28763 * 21 20 15 24 24 N 1.31620 * 120.00420 * 338.88865 * 23 21 20 25 25 Si 1.86804 * 120.00079 * 158.89178 * 23 21 20 26 26 H 1.48501 * 109.46685 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47112 * 240.00051 * 25 23 21 28 28 H 1.48502 * 109.47018 * 119.99580 * 25 23 21 29 29 C 1.46926 * 120.63047 * 186.18307 * 9 7 6 30 30 C 1.38359 * 120.34749 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47031 * 270.02335 * 1 2 3 32 32 H 1.09006 * 109.47038 * 30.01244 * 1 2 3 33 33 H 1.08997 * 109.47802 * 150.01872 * 1 2 3 34 34 H 1.08006 * 119.46103 * 359.97438 * 3 2 1 35 35 H 1.08002 * 119.71422 * 180.26509 * 5 4 3 36 36 H 1.08999 * 109.58391 * 6.62990 * 10 9 7 37 37 H 1.08995 * 109.70478 * 246.27304 * 10 9 7 38 38 H 1.09007 * 109.49962 * 294.68537 * 11 10 9 39 39 H 1.09002 * 109.50055 * 174.58871 * 11 10 9 40 40 H 1.08997 * 109.45975 * 178.61040 * 12 11 10 41 41 H 1.09009 * 109.44491 * 58.65191 * 12 11 10 42 42 H 1.09007 * 110.72132 * 336.75416 * 17 15 13 43 43 H 1.09003 * 110.71816 * 100.02001 * 17 15 13 44 44 H 1.08992 * 111.00569 * 153.57499 * 18 17 15 45 45 H 1.09006 * 111.00097 * 277.42928 * 18 17 15 46 46 H 1.08990 * 110.39388 * 204.36383 * 19 18 17 47 47 H 1.09003 * 110.23322 * 82.11027 * 19 18 17 48 48 H 0.97004 * 119.99723 * 358.89218 * 24 23 21 49 49 H 1.08997 * 109.59015 * 113.79296 * 29 9 7 50 50 H 1.09009 * 109.58590 * 353.36880 * 29 9 7 51 51 H 1.08008 * 120.85102 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2107 0.0005 5 6 4.2349 0.1013 0.0059 6 6 3.6053 -1.1437 0.0000 7 6 4.4023 -2.3889 0.0000 8 8 3.9497 -3.4001 -0.5002 9 7 5.6305 -2.4030 0.5546 10 6 6.1375 -1.2306 1.2807 11 6 6.5912 -1.6727 2.6755 12 6 7.6017 -2.8141 2.5409 13 6 6.9380 -4.0065 1.8484 14 1 6.0725 -4.3281 2.4277 15 6 7.9392 -5.1586 1.7437 16 1 8.8494 -4.8150 1.2521 17 6 7.3166 -6.3244 0.9471 18 6 7.8376 -7.5771 1.6998 19 6 7.8455 -7.0812 3.1650 20 7 8.2575 -5.6679 3.0857 21 6 8.8449 -4.9500 4.0931 22 1 9.5651 -4.1801 3.8587 23 6 8.5146 -5.2120 5.4157 24 7 7.3828 -5.8190 5.7036 25 14 9.6765 -4.7031 6.7870 26 1 10.8715 -4.0423 6.2034 27 1 10.0981 -5.9051 7.5503 28 1 8.9832 -3.7565 7.6974 29 6 6.4882 -3.5908 0.4442 30 6 2.2061 -1.1940 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8899 -0.5141 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6630 2.1275 -0.0004 35 1 5.3135 0.1558 0.0105 36 1 5.3456 -0.4872 1.3726 37 1 6.9814 -0.8008 0.7412 38 1 5.7287 -2.0160 3.2469 39 1 7.0577 -0.8324 3.1897 40 1 7.9448 -3.1140 3.5311 41 1 8.4526 -2.4775 1.9484 42 1 6.2281 -6.2780 0.9827 43 1 7.6703 -6.3191 -0.0840 44 1 7.1573 -8.4193 1.5743 45 1 8.8445 -7.8382 1.3738 46 1 8.5616 -7.6525 3.7555 47 1 6.8474 -7.1617 3.5957 48 1 6.7719 -6.0689 4.9927 49 1 7.3613 -3.3558 -0.1645 50 1 5.9277 -4.4047 -0.0159 51 1 1.6857 -2.1405 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963276680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:24 Heat of formation + Delta-G solvation = 10.244657 kcal Electronic energy + Delta-G solvation = -31128.984372 eV Core-core repulsion = 27221.037885 eV Total energy + Delta-G solvation = -3907.946487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.13138 -40.72745 -39.69417 -38.05119 -35.07060 -34.75647 -34.27150 -33.10124 -32.39576 -31.00530 -28.80501 -28.06737 -27.04254 -26.39781 -24.97002 -24.12084 -23.52992 -22.23324 -21.54317 -21.02111 -20.42468 -19.29334 -18.59214 -17.99588 -17.57102 -17.11896 -16.79930 -16.38679 -15.92098 -15.66474 -15.51103 -15.33684 -15.20910 -14.82989 -14.70463 -14.53068 -14.22790 -14.10804 -14.03153 -13.70433 -13.62437 -13.53458 -13.42073 -13.21552 -12.82162 -12.64718 -12.51182 -12.33814 -12.19443 -11.93214 -11.88239 -11.80436 -11.71607 -11.48320 -11.38468 -11.19290 -11.00405 -10.91900 -10.53095 -10.42877 -9.95779 -9.72469 -8.81885 -8.17515 -5.39112 -0.42454 0.07521 1.56202 1.57064 1.65264 1.79713 1.83662 2.64316 2.66410 3.15749 3.29733 3.41947 3.50031 3.67378 3.72599 3.77081 3.85259 3.87365 3.95189 4.02965 4.09990 4.14682 4.17625 4.22291 4.33044 4.41345 4.48453 4.53914 4.58816 4.67587 4.71402 4.74626 4.79540 4.80157 4.83980 4.87807 4.94115 4.95803 5.07218 5.09179 5.12276 5.18016 5.22758 5.33871 5.37721 5.45010 5.54672 5.58258 5.72167 5.89883 6.22997 6.42267 6.74751 6.91703 7.00999 7.76162 8.43305 9.07724 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.003025 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.918482 B = 9254.672233 C =10131.644633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.138 4.138 3 C 0.119 3.881 4 N -0.496 5.496 5 C 0.113 3.887 6 C -0.194 4.194 7 C 0.557 3.443 8 O -0.579 6.579 9 N -0.598 5.598 10 C 0.089 3.911 11 C -0.127 4.127 12 C -0.120 4.120 13 C -0.085 4.085 14 H 0.019 0.981 15 C 0.158 3.842 16 H 0.043 0.957 17 C -0.120 4.120 18 C -0.122 4.122 19 C 0.139 3.861 20 N -0.610 5.610 21 C -0.311 4.311 22 H 0.057 0.943 23 C -0.078 4.078 24 N -0.951 5.951 25 Si 1.118 2.882 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.292 1.292 29 C 0.124 3.876 30 C -0.039 4.039 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.194 0.806 35 H 0.189 0.811 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.034 0.966 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.018 0.982 47 H -0.005 1.005 48 H 0.255 0.745 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 14.309 -14.022 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.140 4.140 3 C -0.038 4.038 4 N -0.204 5.204 5 C -0.044 4.044 6 C -0.199 4.199 7 C 0.347 3.653 8 O -0.460 6.460 9 N -0.328 5.328 10 C -0.032 4.032 11 C -0.165 4.165 12 C -0.158 4.158 13 C -0.106 4.106 14 H 0.038 0.962 15 C 0.052 3.948 16 H 0.060 0.940 17 C -0.158 4.158 18 C -0.161 4.161 19 C 0.014 3.986 20 N -0.335 5.335 21 C -0.441 4.441 22 H 0.075 0.925 23 C -0.275 4.275 24 N -0.594 5.594 25 Si 0.943 3.057 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.219 1.219 29 C 0.002 3.998 30 C -0.065 4.065 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.211 0.789 35 H 0.205 0.795 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.053 0.947 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.036 0.964 47 H 0.013 0.987 48 H 0.066 0.934 49 H 0.108 0.892 50 H 0.097 0.903 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.919 14.636 -12.582 20.862 hybrid contribution -0.817 -1.525 -0.958 1.978 sum -8.736 13.111 -13.540 20.774 Atomic orbital electron populations 1.20829 0.87220 1.04660 1.03856 1.21241 0.99641 0.92703 1.00380 1.23522 0.89602 0.98992 0.91700 1.67849 1.09078 1.30450 1.13051 1.23698 1.01837 0.86110 0.92708 1.20888 0.95509 0.94466 1.09016 1.18514 0.81037 0.87890 0.77887 1.90734 1.70779 1.35756 1.48725 1.48086 1.15094 1.16837 1.52817 1.22709 1.01165 0.87158 0.92217 1.21878 0.98702 0.99318 0.96628 1.21725 0.97451 0.93875 1.02712 1.21681 0.97360 0.96918 0.94653 0.96195 1.21181 0.94450 0.92548 0.86612 0.93974 1.22613 0.99531 0.94253 0.99371 1.22665 1.01647 0.97562 0.94181 1.21445 0.95462 0.86136 0.95592 1.44762 1.71323 1.06482 1.10916 1.19713 1.18434 1.18983 0.86930 0.92532 1.27228 0.99040 1.00445 1.00764 1.70830 1.08650 1.44320 1.35601 0.82801 0.73916 0.75806 0.73172 1.19187 1.22078 1.21948 1.21714 0.93963 0.87359 0.96801 1.21755 0.92194 0.99932 0.92655 0.89698 0.88550 0.90943 0.78879 0.79479 0.87275 0.87560 0.94728 0.88788 0.91142 0.91597 0.92606 0.88629 0.90029 0.90557 0.96402 0.98704 0.93437 0.89166 0.90346 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.03 71.24 0.71 -0.30 16 2 C -0.14 -2.23 5.89 -19.81 -0.12 -2.35 16 3 C 0.12 1.84 10.85 84.71 0.92 2.75 16 4 N -0.50 -9.90 10.35 -194.76 -2.01 -11.92 16 5 C 0.11 2.37 8.62 85.02 0.73 3.11 16 6 C -0.19 -4.87 5.51 -20.00 -0.11 -4.98 16 7 C 0.56 17.39 7.48 86.79 0.65 18.04 16 8 O -0.58 -22.12 16.16 -3.89 -0.06 -22.18 16 9 N -0.60 -17.20 2.97 -822.32 -2.44 -19.64 16 10 C 0.09 2.03 4.71 86.36 0.41 2.44 16 11 C -0.13 -3.73 6.08 30.67 0.19 -3.55 16 12 C -0.12 -4.34 4.77 30.62 0.15 -4.20 16 13 C -0.08 -3.21 1.96 -10.72 -0.02 -3.24 16 14 H 0.02 0.92 8.14 -2.38 -0.02 0.91 16 15 C 0.16 6.30 2.82 45.34 0.13 6.42 16 16 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 17 C -0.12 -4.08 5.43 31.78 0.17 -3.91 16 18 C -0.12 -4.36 7.07 31.91 0.23 -4.14 16 19 C 0.14 6.66 5.75 86.78 0.50 7.16 16 20 N -0.61 -30.07 2.85 -668.72 -1.90 -31.98 16 21 C -0.31 -16.72 7.06 84.03 0.59 -16.13 16 22 H 0.06 3.01 7.44 -2.91 -0.02 2.99 16 23 C -0.08 -4.42 5.23 84.86 0.44 -3.97 16 24 N -0.95 -58.92 13.25 21.65 0.29 -58.64 16 25 Si 1.12 50.96 29.97 68.60 2.06 53.02 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 28 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 29 C 0.12 3.86 5.29 86.36 0.46 4.31 16 30 C -0.04 -0.88 9.41 22.73 0.21 -0.67 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.10 0.47 8.09 -2.38 -0.02 0.45 16 33 H 0.07 0.69 8.09 -2.39 -0.02 0.68 16 34 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.19 3.20 5.27 -2.91 -0.02 3.18 16 36 H 0.11 2.21 4.05 -2.39 -0.01 2.20 16 37 H 0.11 1.82 8.01 -2.39 -0.02 1.80 16 38 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.07 3.22 4.88 -2.39 -0.01 3.21 16 41 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.06 2.00 7.31 -2.38 -0.02 1.98 16 43 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.08 2.51 8.14 -2.38 -0.02 2.50 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.00 -0.26 6.58 -2.39 -0.02 -0.27 16 48 H 0.25 16.24 5.87 -92.70 -0.54 15.70 16 49 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.08 2.65 5.86 -2.38 -0.01 2.64 16 51 H 0.14 3.17 7.97 -2.91 -0.02 3.15 16 Total: -1.00 -74.46 387.87 3.31 -71.15 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.15 Total: 23.38 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.24 Total: -3.19 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.08 Total: -122.17 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.06 Total: -22.18 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 2.06 Total: 53.02 kcal Total: -74.46 3.31 -71.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.392 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds