Wall clock time and date at job start Wed Apr 1 2020 02:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38358 * 120.34646 * 2 1 4 4 N 1.31926 * 121.07684 * 180.02562 * 3 2 1 5 5 C 1.31691 * 121.88377 * 0.02562 * 4 3 2 6 6 C 1.39520 * 120.56470 * 359.97438 * 5 4 3 7 7 C 1.47839 * 120.55890 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00195 * 325.38466 * 7 6 5 9 9 N 1.34778 * 120.00404 * 145.38852 * 7 6 5 10 10 C 1.46932 * 120.62618 * 355.01336 * 9 7 6 11 11 C 1.53194 * 108.77632 * 233.63554 * 10 9 7 12 12 C 1.53039 * 109.31072 * 305.36649 * 11 10 9 13 13 C 1.53038 * 109.53962 * 61.36490 * 12 11 10 14 14 H 1.08997 * 109.49955 * 58.58493 * 13 12 11 15 15 C 1.53003 * 109.50048 * 178.68419 * 13 12 11 16 16 H 1.09005 * 109.87159 * 305.08778 * 15 13 12 17 17 C 1.54318 * 109.88485 * 183.91215 * 15 13 12 18 18 C 1.55162 * 102.94235 * 218.39091 * 17 15 13 19 19 C 1.54908 * 101.58031 * 35.49691 * 18 17 15 20 20 N 1.47021 * 109.88319 * 66.10068 * 15 13 12 21 21 C 1.36940 * 125.64753 * 298.32867 * 20 15 13 22 22 H 1.08001 * 120.00412 * 138.82682 * 21 20 15 23 23 C 1.38815 * 119.99867 * 318.82036 * 21 20 15 24 24 N 1.31618 * 120.00017 * 169.09242 * 23 21 20 25 25 Si 1.86803 * 119.99999 * 349.09723 * 23 21 20 26 26 H 1.48500 * 109.47225 * 87.29528 * 25 23 21 27 27 H 1.48494 * 109.47015 * 207.29263 * 25 23 21 28 28 H 1.48502 * 109.46874 * 327.29368 * 25 23 21 29 29 C 1.46918 * 120.63410 * 175.04389 * 9 7 6 30 30 C 1.38356 * 120.35064 * 180.30147 * 2 1 3 31 31 H 1.08999 * 109.46836 * 90.00152 * 1 2 3 32 32 H 1.09004 * 109.46797 * 209.99663 * 1 2 3 33 33 H 1.08996 * 109.47283 * 329.99848 * 1 2 3 34 34 H 1.08000 * 119.45747 * 0.04610 * 3 2 1 35 35 H 1.07996 * 119.71915 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.58474 * 113.84902 * 10 9 7 37 37 H 1.09001 * 109.58517 * 353.41945 * 10 9 7 38 38 H 1.08995 * 109.49686 * 185.41823 * 11 10 9 39 39 H 1.08997 * 109.49749 * 65.31416 * 11 10 9 40 40 H 1.09000 * 109.45933 * 181.38696 * 12 11 10 41 41 H 1.08999 * 109.46133 * 301.34273 * 12 11 10 42 42 H 1.09002 * 110.72013 * 336.75235 * 17 15 13 43 43 H 1.09000 * 110.72219 * 100.02160 * 17 15 13 44 44 H 1.08999 * 110.99937 * 277.42702 * 18 17 15 45 45 H 1.08994 * 111.00616 * 153.57452 * 18 17 15 46 46 H 1.09001 * 110.36411 * 204.14959 * 19 18 17 47 47 H 1.09004 * 110.45850 * 81.88131 * 19 18 17 48 48 H 0.96999 * 120.00254 * 179.97438 * 24 23 21 49 49 H 1.09003 * 109.58416 * 246.15068 * 29 9 7 50 50 H 1.09001 * 109.59050 * 6.57440 * 29 9 7 51 51 H 1.08006 * 120.85417 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2350 0.1016 -0.0015 6 6 3.6055 -1.1435 -0.0016 7 6 4.4024 -2.3887 -0.0022 8 8 5.4595 -2.4335 -0.6006 9 7 3.9569 -3.4744 0.6607 10 6 2.7376 -3.4045 1.4776 11 6 3.0601 -3.9057 2.8888 12 6 3.6784 -5.3029 2.8006 13 6 4.9822 -5.2362 2.0020 14 1 5.6701 -4.5427 2.4858 15 6 5.6163 -6.6273 1.9424 16 1 5.7475 -7.0183 2.9514 17 6 6.9799 -6.5522 1.2237 18 6 7.0057 -7.8605 0.3898 19 6 5.5168 -8.0015 -0.0138 20 7 4.7610 -7.5337 1.1623 21 6 3.4755 -7.8855 1.4765 22 1 2.7280 -7.9501 0.6996 23 6 3.1330 -8.1594 2.7935 24 7 1.8674 -8.2861 3.1317 25 14 4.4685 -8.3480 4.0860 26 1 4.8028 -7.0158 4.6505 27 1 3.9846 -9.2383 5.1715 28 1 5.6798 -8.9399 3.4633 29 6 4.6815 -4.7499 0.5808 30 6 2.2061 -1.1939 -0.0063 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6628 2.1275 0.0008 35 1 5.3136 0.1561 -0.0015 36 1 1.9646 -4.0323 1.0346 37 1 2.3895 -2.3727 1.5270 38 1 2.1438 -3.9499 3.4774 39 1 3.7661 -3.2249 3.3642 40 1 3.8862 -5.6721 3.8050 41 1 2.9818 -5.9775 2.3029 42 1 7.0251 -5.6791 0.5727 43 1 7.7962 -6.5388 1.9458 44 1 7.3272 -8.7055 0.9988 45 1 7.6403 -7.7508 -0.4896 46 1 5.2789 -9.0435 -0.2278 47 1 5.2960 -7.3772 -0.8796 48 1 1.6281 -8.4779 4.0520 49 1 4.0669 -5.4875 0.0647 50 1 5.6160 -4.6060 0.0384 51 1 1.6859 -2.1404 -0.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963276681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:29 Heat of formation + Delta-G solvation = 38.148929 kcal Electronic energy + Delta-G solvation = -31962.448811 eV Core-core repulsion = 28055.712344 eV Total energy + Delta-G solvation = -3906.736467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97596 -39.59999 -38.32818 -36.44491 -33.98276 -33.18838 -32.76469 -31.77386 -30.90596 -29.99317 -27.62370 -27.16026 -25.82062 -24.51015 -23.85994 -22.99105 -22.39874 -20.59760 -20.18591 -19.60589 -18.86880 -17.34578 -17.12112 -16.75923 -16.49298 -16.02486 -15.54711 -14.99697 -14.75416 -14.30593 -14.10395 -13.94911 -13.67706 -13.51096 -13.34110 -13.27690 -13.23745 -12.99225 -12.80617 -12.71499 -12.51413 -12.12526 -12.02055 -11.93016 -11.58060 -11.41919 -11.15568 -10.88044 -10.71523 -10.45247 -10.40843 -10.17954 -10.15817 -10.13420 -9.85992 -9.70836 -9.63336 -9.36096 -9.26506 -9.14941 -8.50154 -8.19622 -6.75899 -6.08745 -3.55212 0.57577 0.96338 2.79986 3.13665 3.24596 3.40302 3.45054 3.62375 4.16107 4.43114 4.44018 4.49508 4.62500 4.71977 4.88830 4.96579 5.07723 5.16677 5.29564 5.33081 5.34920 5.35879 5.40770 5.43096 5.57289 5.60826 5.67480 5.70229 5.75183 5.83624 5.86275 5.91623 5.99180 6.12743 6.18173 6.22833 6.25857 6.32627 6.37792 6.40178 6.50274 6.59433 6.67112 6.72603 6.79896 6.87906 6.91180 6.99391 7.55229 7.58741 7.70408 7.95275 8.24853 8.26899 8.79562 9.57040 10.22109 11.05641 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003708 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.540419 B = 7548.434090 C = 8559.145207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.146 4.146 3 C 0.113 3.887 4 N -0.485 5.485 5 C 0.145 3.855 6 C -0.170 4.170 7 C 0.558 3.442 8 O -0.542 6.542 9 N -0.594 5.594 10 C 0.096 3.904 11 C -0.131 4.131 12 C -0.141 4.141 13 C -0.096 4.096 14 H 0.051 0.949 15 C 0.151 3.849 16 H 0.037 0.963 17 C -0.132 4.132 18 C -0.136 4.136 19 C 0.128 3.872 20 N -0.603 5.603 21 C -0.247 4.247 22 H 0.082 0.918 23 C 0.048 3.952 24 N -0.904 5.904 25 Si 0.885 3.115 26 H -0.276 1.276 27 H -0.306 1.306 28 H -0.273 1.273 29 C 0.127 3.873 30 C -0.049 4.049 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.131 0.869 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.026 0.974 48 H 0.265 0.735 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 13.944 -3.849 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.148 4.148 3 C -0.044 4.044 4 N -0.193 5.193 5 C -0.013 4.013 6 C -0.176 4.176 7 C 0.345 3.655 8 O -0.421 6.421 9 N -0.325 5.325 10 C -0.026 4.026 11 C -0.169 4.169 12 C -0.178 4.178 13 C -0.117 4.117 14 H 0.069 0.931 15 C 0.044 3.956 16 H 0.054 0.946 17 C -0.170 4.170 18 C -0.174 4.174 19 C 0.003 3.997 20 N -0.329 5.329 21 C -0.375 4.375 22 H 0.099 0.901 23 C -0.153 4.153 24 N -0.545 5.545 25 Si 0.717 3.283 26 H -0.204 1.204 27 H -0.235 1.235 28 H -0.198 1.198 29 C 0.006 3.994 30 C -0.075 4.075 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.148 0.852 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.107 0.893 50 H 0.101 0.899 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.158 14.626 -4.017 15.168 hybrid contribution 0.242 -0.951 1.124 1.492 sum 0.399 13.675 -2.892 13.983 Atomic orbital electron populations 1.20745 0.89604 1.03533 1.02898 1.20914 0.97966 0.93747 1.02141 1.22879 0.90027 0.97600 0.93888 1.67759 1.08004 1.30867 1.12629 1.22889 1.00662 0.85987 0.91763 1.21054 0.94568 0.95841 1.06096 1.18072 0.85041 0.82759 0.79609 1.90763 1.22667 1.83623 1.45012 1.48120 1.26914 1.10836 1.46652 1.22257 0.86779 1.01498 0.92110 1.21921 1.01044 0.98840 0.95094 1.22248 0.98513 0.96036 1.01003 1.21731 0.97637 0.97260 0.95062 0.93104 1.21237 0.89773 0.89326 0.95241 0.94587 1.22670 0.96970 0.98270 0.99127 1.22753 0.98119 0.97391 0.99154 1.21759 0.89248 0.97708 0.90953 1.44680 1.12222 1.49720 1.26302 1.18389 0.83140 1.42093 0.93829 0.90086 1.25470 0.95469 0.96515 0.97892 1.69755 1.15530 1.50671 1.18523 0.87029 0.82807 0.77354 0.81123 1.20374 1.23465 1.19847 1.21776 0.97284 0.82356 0.97987 1.21979 0.92859 0.99234 0.93458 0.90670 0.90844 0.90968 0.82492 0.81874 0.90468 0.89901 0.91112 0.93081 0.92571 0.85161 0.91029 0.92129 0.91877 0.91896 0.93400 0.95644 0.92534 0.89252 0.89941 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.03 36.01 0.36 -0.34 16 2 C -0.15 -1.37 5.89 -104.53 -0.62 -1.98 16 3 C 0.11 1.12 10.85 -17.47 -0.19 0.93 16 4 N -0.49 -6.02 10.35 -12.91 -0.13 -6.16 16 5 C 0.14 1.90 10.78 -17.13 -0.18 1.72 16 6 C -0.17 -2.31 5.33 -104.82 -0.56 -2.87 16 7 C 0.56 9.14 7.41 -12.33 -0.09 9.05 16 8 O -0.54 -10.42 16.25 5.32 0.09 -10.33 16 9 N -0.59 -9.65 2.97 -173.88 -0.52 -10.17 16 10 C 0.10 1.38 4.81 -3.71 -0.02 1.36 16 11 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 12 C -0.14 -2.81 3.61 -26.69 -0.10 -2.90 16 13 C -0.10 -1.82 2.14 -90.50 -0.19 -2.01 16 14 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 15 C 0.15 3.05 2.13 -66.95 -0.14 2.91 16 16 H 0.04 0.82 3.44 -51.93 -0.18 0.64 16 17 C -0.13 -2.27 6.30 -24.90 -0.16 -2.42 16 18 C -0.14 -2.24 7.09 -24.58 -0.17 -2.42 16 19 C 0.13 2.44 7.23 -2.53 -0.02 2.42 16 20 N -0.60 -13.21 1.56 -162.58 -0.25 -13.47 16 21 C -0.25 -6.22 8.25 -15.06 -0.12 -6.34 16 22 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 23 C 0.05 1.25 3.64 -17.43 -0.06 1.19 16 24 N -0.90 -25.00 13.97 55.49 0.78 -24.23 16 25 Si 0.88 21.48 23.03 -169.99 -3.91 17.57 16 26 H -0.28 -6.46 5.61 56.52 0.32 -6.14 16 27 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.27 -6.69 7.02 56.52 0.40 -6.29 16 29 C 0.13 2.30 5.29 -3.71 -0.02 2.28 16 30 C -0.05 -0.55 7.16 -38.87 -0.28 -0.83 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.16 2.06 8.00 -52.49 -0.42 1.64 16 36 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 37 H 0.08 1.00 4.35 -51.93 -0.23 0.78 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.22 5.29 -51.93 -0.27 0.94 16 41 H 0.13 2.99 4.56 -51.93 -0.24 2.75 16 42 H 0.07 1.18 6.10 -51.93 -0.32 0.86 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.09 1.78 7.21 -51.93 -0.37 1.40 16 50 H 0.08 1.53 5.35 -51.93 -0.28 1.26 16 51 H 0.15 1.52 6.05 -52.48 -0.32 1.21 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -29.52 374.21 -8.80 -38.32 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.76 Total: 5.35 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.73 Total: -2.53 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.13 Total: -54.03 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -3.91 Total: 17.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.52 -8.80 -38.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.472 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds