Wall clock time and date at job start Wed Apr 1 2020 02:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38358 * 120.34646 * 2 1 4 4 N 1.31926 * 121.07684 * 180.02562 * 3 2 1 5 5 C 1.31691 * 121.88377 * 0.02562 * 4 3 2 6 6 C 1.39520 * 120.56470 * 359.97438 * 5 4 3 7 7 C 1.47839 * 120.55890 * 180.02562 * 6 5 4 8 8 O 1.21556 * 120.00195 * 325.38466 * 7 6 5 9 9 N 1.34778 * 120.00404 * 145.38852 * 7 6 5 10 10 C 1.46932 * 120.62618 * 355.01336 * 9 7 6 11 11 C 1.53194 * 108.77632 * 233.63554 * 10 9 7 12 12 C 1.53039 * 109.31072 * 305.36649 * 11 10 9 13 13 C 1.53038 * 109.53962 * 61.36490 * 12 11 10 14 14 H 1.08997 * 109.49955 * 58.58493 * 13 12 11 15 15 C 1.53003 * 109.50048 * 178.68419 * 13 12 11 16 16 H 1.09005 * 109.87159 * 305.08778 * 15 13 12 17 17 C 1.54318 * 109.88485 * 183.91215 * 15 13 12 18 18 C 1.55162 * 102.94235 * 218.39091 * 17 15 13 19 19 C 1.54908 * 101.58031 * 35.49691 * 18 17 15 20 20 N 1.47021 * 109.88319 * 66.10068 * 15 13 12 21 21 C 1.36940 * 125.64753 * 298.32867 * 20 15 13 22 22 H 1.08001 * 120.00412 * 138.82682 * 21 20 15 23 23 C 1.38815 * 119.99867 * 318.82036 * 21 20 15 24 24 N 1.31618 * 120.00017 * 169.09242 * 23 21 20 25 25 Si 1.86803 * 119.99999 * 349.09723 * 23 21 20 26 26 H 1.48500 * 109.47225 * 87.29528 * 25 23 21 27 27 H 1.48494 * 109.47015 * 207.29263 * 25 23 21 28 28 H 1.48502 * 109.46874 * 327.29368 * 25 23 21 29 29 C 1.46918 * 120.63410 * 175.04389 * 9 7 6 30 30 C 1.38356 * 120.35064 * 180.30147 * 2 1 3 31 31 H 1.08999 * 109.46836 * 90.00152 * 1 2 3 32 32 H 1.09004 * 109.46797 * 209.99663 * 1 2 3 33 33 H 1.08996 * 109.47283 * 329.99848 * 1 2 3 34 34 H 1.08000 * 119.45747 * 0.04610 * 3 2 1 35 35 H 1.07996 * 119.71915 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.58474 * 113.84902 * 10 9 7 37 37 H 1.09001 * 109.58517 * 353.41945 * 10 9 7 38 38 H 1.08995 * 109.49686 * 185.41823 * 11 10 9 39 39 H 1.08997 * 109.49749 * 65.31416 * 11 10 9 40 40 H 1.09000 * 109.45933 * 181.38696 * 12 11 10 41 41 H 1.08999 * 109.46133 * 301.34273 * 12 11 10 42 42 H 1.09002 * 110.72013 * 336.75235 * 17 15 13 43 43 H 1.09000 * 110.72219 * 100.02160 * 17 15 13 44 44 H 1.08999 * 110.99937 * 277.42702 * 18 17 15 45 45 H 1.08994 * 111.00616 * 153.57452 * 18 17 15 46 46 H 1.09001 * 110.36411 * 204.14959 * 19 18 17 47 47 H 1.09004 * 110.45850 * 81.88131 * 19 18 17 48 48 H 0.96999 * 120.00254 * 179.97438 * 24 23 21 49 49 H 1.09003 * 109.58416 * 246.15068 * 29 9 7 50 50 H 1.09001 * 109.59050 * 6.57440 * 29 9 7 51 51 H 1.08006 * 120.85417 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2350 0.1016 -0.0015 6 6 3.6055 -1.1435 -0.0016 7 6 4.4024 -2.3887 -0.0022 8 8 5.4595 -2.4335 -0.6006 9 7 3.9569 -3.4744 0.6607 10 6 2.7376 -3.4045 1.4776 11 6 3.0601 -3.9057 2.8888 12 6 3.6784 -5.3029 2.8006 13 6 4.9822 -5.2362 2.0020 14 1 5.6701 -4.5427 2.4858 15 6 5.6163 -6.6273 1.9424 16 1 5.7475 -7.0183 2.9514 17 6 6.9799 -6.5522 1.2237 18 6 7.0057 -7.8605 0.3898 19 6 5.5168 -8.0015 -0.0138 20 7 4.7610 -7.5337 1.1623 21 6 3.4755 -7.8855 1.4765 22 1 2.7280 -7.9501 0.6996 23 6 3.1330 -8.1594 2.7935 24 7 1.8674 -8.2861 3.1317 25 14 4.4685 -8.3480 4.0860 26 1 4.8028 -7.0158 4.6505 27 1 3.9846 -9.2383 5.1715 28 1 5.6798 -8.9399 3.4633 29 6 4.6815 -4.7499 0.5808 30 6 2.2061 -1.1939 -0.0063 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.6628 2.1275 0.0008 35 1 5.3136 0.1561 -0.0015 36 1 1.9646 -4.0323 1.0346 37 1 2.3895 -2.3727 1.5270 38 1 2.1438 -3.9499 3.4774 39 1 3.7661 -3.2249 3.3642 40 1 3.8862 -5.6721 3.8050 41 1 2.9818 -5.9775 2.3029 42 1 7.0251 -5.6791 0.5727 43 1 7.7962 -6.5388 1.9458 44 1 7.3272 -8.7055 0.9988 45 1 7.6403 -7.7508 -0.4896 46 1 5.2789 -9.0435 -0.2278 47 1 5.2960 -7.3772 -0.8796 48 1 1.6281 -8.4779 4.0520 49 1 4.0669 -5.4875 0.0647 50 1 5.6160 -4.6060 0.0384 51 1 1.6859 -2.1404 -0.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963276681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:28 Heat of formation + Delta-G solvation = 21.281022 kcal Electronic energy + Delta-G solvation = -31963.180258 eV Core-core repulsion = 28055.712344 eV Total energy + Delta-G solvation = -3907.467914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07211 -40.84707 -39.73398 -37.84443 -34.95447 -34.71555 -34.19697 -33.00177 -32.25606 -31.75362 -28.75235 -28.17093 -27.09415 -26.28539 -24.92818 -24.28550 -23.49146 -22.07263 -21.65953 -21.13417 -20.20515 -18.62312 -18.35183 -18.04153 -17.71616 -17.48973 -17.02506 -16.39489 -16.09331 -15.52449 -15.30863 -15.22277 -15.13460 -14.94194 -14.79518 -14.48408 -14.41141 -14.14478 -14.00505 -13.61477 -13.58695 -13.51449 -13.40288 -13.16667 -12.88566 -12.86040 -12.79380 -12.45550 -12.22485 -12.12824 -11.94313 -11.83393 -11.73943 -11.47994 -11.33031 -11.14998 -10.87992 -10.71069 -10.44199 -10.36599 -9.98994 -9.66074 -8.59479 -8.14445 -5.55971 -0.35063 0.10542 1.29003 1.39482 1.47092 1.60373 1.88731 2.42386 2.69742 3.14462 3.20272 3.38550 3.49999 3.67954 3.76773 3.80404 3.85817 3.89688 4.03223 4.06314 4.10337 4.13316 4.20501 4.27904 4.41004 4.41749 4.54199 4.60545 4.64625 4.70606 4.74732 4.81415 4.85860 4.86687 4.92166 4.98616 5.00902 5.06568 5.13825 5.15410 5.18633 5.21524 5.24690 5.26337 5.37183 5.47261 5.49984 5.60804 5.83550 6.04162 6.23591 6.31558 6.81926 6.90566 6.96394 7.59105 8.29993 9.03843 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003708 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.540419 B = 7548.434090 C = 8559.145207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.133 4.133 3 C 0.116 3.884 4 N -0.501 5.501 5 C 0.134 3.866 6 C -0.186 4.186 7 C 0.559 3.441 8 O -0.576 6.576 9 N -0.596 5.596 10 C 0.101 3.899 11 C -0.127 4.127 12 C -0.137 4.137 13 C -0.091 4.091 14 H 0.058 0.942 15 C 0.142 3.858 16 H 0.017 0.983 17 C -0.126 4.126 18 C -0.124 4.124 19 C 0.122 3.878 20 N -0.614 5.614 21 C -0.226 4.226 22 H 0.049 0.951 23 C 0.017 3.983 24 N -0.940 5.940 25 Si 0.927 3.073 26 H -0.266 1.266 27 H -0.319 1.319 28 H -0.274 1.274 29 C 0.141 3.859 30 C -0.055 4.055 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.193 0.807 35 H 0.158 0.842 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.041 0.959 47 H 0.033 0.967 48 H 0.262 0.738 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.556 16.330 -4.218 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.135 4.135 3 C -0.041 4.041 4 N -0.209 5.209 5 C -0.023 4.023 6 C -0.191 4.191 7 C 0.348 3.652 8 O -0.457 6.457 9 N -0.327 5.327 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.174 4.174 13 C -0.112 4.112 14 H 0.076 0.924 15 C 0.036 3.964 16 H 0.034 0.966 17 C -0.164 4.164 18 C -0.162 4.162 19 C -0.002 4.002 20 N -0.341 5.341 21 C -0.355 4.355 22 H 0.066 0.934 23 C -0.181 4.181 24 N -0.584 5.584 25 Si 0.759 3.241 26 H -0.193 1.193 27 H -0.248 1.248 28 H -0.200 1.200 29 C 0.019 3.981 30 C -0.080 4.080 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.210 0.790 35 H 0.176 0.824 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.231 17.025 -4.396 17.585 hybrid contribution 0.141 -1.613 1.137 1.978 sum 0.372 15.412 -3.259 15.757 Atomic orbital electron populations 1.20852 0.87031 1.04856 1.03981 1.21245 0.99615 0.92680 0.99963 1.23525 0.89308 0.99303 0.91953 1.67803 1.09382 1.30393 1.13289 1.22843 1.00758 0.86215 0.92463 1.20817 0.95349 0.94369 1.08598 1.18490 0.84748 0.83364 0.78558 1.90732 1.24333 1.84283 1.46361 1.48138 1.27295 1.10266 1.46980 1.22337 0.85926 1.03152 0.90640 1.21880 1.01479 0.96581 0.96524 1.22051 0.98425 0.97712 0.99223 1.21663 0.97240 0.96821 0.95511 0.92366 1.21348 0.91370 0.89325 0.94341 0.96586 1.22667 0.95382 0.98924 0.99454 1.22709 0.96354 0.96915 1.00270 1.21887 0.90944 0.97336 0.90058 1.44746 1.11540 1.50559 1.27213 1.18125 0.84111 1.40425 0.92833 0.93389 1.25728 0.96256 0.97137 0.99007 1.69843 1.16913 1.53089 1.18569 0.86352 0.81002 0.77353 0.79347 1.19279 1.24844 1.20019 1.21430 0.96863 0.82862 0.96938 1.22123 0.91895 1.00533 0.93497 0.89544 0.90415 0.88855 0.79050 0.82428 0.90632 0.86992 0.90017 0.92178 0.94806 0.88377 0.90175 0.90244 0.92083 0.88562 0.94080 0.94929 0.92887 0.91487 0.90256 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.03 71.24 0.71 -0.23 16 2 C -0.13 -2.04 5.89 -19.81 -0.12 -2.16 16 3 C 0.12 1.90 10.85 84.71 0.92 2.82 16 4 N -0.50 -11.43 10.35 -194.76 -2.01 -13.44 16 5 C 0.13 3.41 10.78 85.02 0.92 4.33 16 6 C -0.19 -4.83 5.33 -19.99 -0.11 -4.94 16 7 C 0.56 18.06 7.41 86.78 0.64 18.70 16 8 O -0.58 -22.17 16.25 -3.89 -0.06 -22.23 16 9 N -0.60 -19.07 2.97 -822.32 -2.44 -21.51 16 10 C 0.10 2.78 4.81 86.36 0.42 3.20 16 11 C -0.13 -3.94 6.08 30.67 0.19 -3.76 16 12 C -0.14 -5.48 3.61 30.62 0.11 -5.37 16 13 C -0.09 -3.45 2.14 -10.72 -0.02 -3.47 16 14 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 15 C 0.14 5.68 2.13 45.34 0.10 5.78 16 16 H 0.02 0.74 3.44 -2.38 -0.01 0.73 16 17 C -0.13 -4.07 6.30 31.78 0.20 -3.87 16 18 C -0.12 -3.82 7.09 31.99 0.23 -3.60 16 19 C 0.12 4.57 7.23 86.86 0.63 5.20 16 20 N -0.61 -27.15 1.56 -668.27 -1.04 -28.19 16 21 C -0.23 -11.75 8.25 84.03 0.69 -11.06 16 22 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 23 C 0.02 0.89 3.64 84.86 0.31 1.20 16 24 N -0.94 -53.83 13.97 21.65 0.30 -53.53 16 25 Si 0.93 45.16 23.03 68.60 1.58 46.74 16 26 H -0.27 -12.36 5.61 99.48 0.56 -11.81 16 27 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 28 H -0.27 -13.27 7.02 99.48 0.70 -12.57 16 29 C 0.14 5.10 5.29 86.36 0.46 5.55 16 30 C -0.05 -1.10 7.16 22.73 0.16 -0.94 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.66 8.10 -2.39 -0.02 0.64 16 33 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 34 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.16 4.00 8.00 -2.91 -0.02 3.98 16 36 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 37 H 0.11 2.46 4.35 -2.39 -0.01 2.45 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.03 1.47 5.29 -2.39 -0.01 1.46 16 41 H 0.10 4.63 4.56 -2.39 -0.01 4.62 16 42 H 0.08 2.46 6.10 -2.39 -0.01 2.45 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 49 H 0.07 2.72 7.21 -2.39 -0.02 2.70 16 50 H 0.08 2.92 5.35 -2.39 -0.01 2.91 16 51 H 0.16 2.85 6.05 -2.91 -0.02 2.83 16 Total: -1.00 -66.46 374.21 3.54 -62.93 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.79 Total: 21.83 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 6.43 Total: 7.41 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -5.20 Total: -116.67 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.06 Total: -22.23 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.58 Total: 46.74 kcal Total: -66.46 3.54 -62.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963276681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.207 kcal (2) G-P(sol) polarization free energy of solvation -66.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds