Wall clock time and date at job start Wed Apr 1 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.31694 * 119.71654 * 2 1 4 4 C 1.31933 * 121.88025 * 180.02562 * 3 2 1 5 5 C 1.38351 * 121.07813 * 0.02562 * 4 3 2 6 6 C 1.38354 * 119.30254 * 359.71431 * 5 4 3 7 7 C 1.39520 * 119.71870 * 180.02562 * 2 1 3 8 8 C 1.47842 * 120.55700 * 359.97438 * 7 2 1 9 9 O 1.21549 * 120.00068 * 309.41329 * 8 7 2 10 10 N 1.34778 * 119.99899 * 129.69205 * 8 7 2 11 11 C 1.46929 * 120.62860 * 354.00583 * 10 8 7 12 12 C 1.52756 * 109.00773 * 233.58734 * 11 10 8 13 13 C 1.53045 * 109.38403 * 305.59054 * 12 11 10 14 14 C 1.53040 * 109.53718 * 61.24345 * 13 12 11 15 15 H 1.08994 * 109.49515 * 58.58281 * 14 13 12 16 16 C 1.52999 * 109.49835 * 178.68267 * 14 13 12 17 17 H 1.08988 * 109.87410 * 180.81208 * 16 14 13 18 18 C 1.54322 * 109.88010 * 59.63392 * 16 14 13 19 19 C 1.55163 * 102.94350 * 218.39035 * 18 16 14 20 20 C 1.54911 * 101.57851 * 35.50507 * 19 18 16 21 21 N 1.47017 * 109.87999 * 301.83014 * 16 14 13 22 22 C 1.36937 * 125.64729 * 298.31812 * 21 16 14 23 23 H 1.07997 * 120.00048 * 345.39710 * 22 21 16 24 24 C 1.38814 * 119.99890 * 165.39984 * 22 21 16 25 25 N 1.31615 * 120.00200 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00053 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47549 * 89.99855 * 26 24 22 28 28 H 1.48499 * 109.47545 * 210.00038 * 26 24 22 29 29 H 1.48507 * 109.47120 * 330.00030 * 26 24 22 30 30 C 1.46923 * 120.62862 * 174.29489 * 10 8 7 31 31 H 1.08996 * 109.47586 * 268.83185 * 1 2 3 32 32 H 1.09008 * 109.47269 * 28.82827 * 1 2 3 33 33 H 1.08994 * 109.47360 * 148.82989 * 1 2 3 34 34 H 1.07998 * 119.45901 * 180.02562 * 4 3 2 35 35 H 1.08001 * 120.35013 * 179.97438 * 5 4 3 36 36 H 1.07999 * 120.85641 * 180.28273 * 6 5 4 37 37 H 1.08995 * 109.58678 * 353.42723 * 11 10 8 38 38 H 1.09000 * 109.58169 * 113.84721 * 11 10 8 39 39 H 1.09006 * 109.56330 * 185.55670 * 12 11 10 40 40 H 1.08995 * 109.36033 * 65.50395 * 12 11 10 41 41 H 1.08998 * 109.45829 * 301.21869 * 13 12 11 42 42 H 1.09002 * 109.45935 * 181.26542 * 13 12 11 43 43 H 1.09000 * 110.72475 * 336.75165 * 18 16 14 44 44 H 1.09001 * 110.72143 * 100.02665 * 18 16 14 45 45 H 1.08998 * 111.00452 * 277.43014 * 19 18 16 46 46 H 1.08996 * 111.00508 * 153.57665 * 19 18 16 47 47 H 1.09002 * 110.36418 * 204.15450 * 20 19 18 48 48 H 1.08994 * 110.46057 * 81.87959 * 20 19 18 49 49 H 0.97004 * 119.99991 * 180.02562 * 25 24 22 50 50 H 1.09006 * 109.58274 * 246.14964 * 30 10 8 51 51 H 1.08998 * 109.58615 * 6.43459 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1597 1.1437 0.0000 4 6 3.4781 1.1936 -0.0005 5 6 4.2365 0.0364 -0.0016 6 6 3.5986 -1.1913 0.0039 7 6 2.1986 -1.2117 -0.0005 8 6 1.4655 -2.4956 -0.0005 9 8 0.5841 -2.6922 0.8130 10 7 1.7784 -3.4502 -0.8991 11 6 2.7524 -3.1833 -1.9663 12 6 2.1185 -3.5217 -3.3143 13 6 1.5974 -4.9604 -3.2837 14 6 0.5274 -5.0942 -2.1978 15 1 -0.2853 -4.3966 -2.4000 16 6 -0.0163 -6.5243 -2.1900 17 1 -0.7894 -6.6226 -1.4281 18 6 1.1295 -7.5198 -1.9114 19 6 0.7867 -8.7135 -2.8415 20 6 0.1894 -7.9869 -4.0724 21 7 -0.5708 -6.8555 -3.5107 22 6 -1.6202 -6.2192 -4.1181 23 1 -2.2615 -5.5668 -3.5440 24 6 -1.8597 -6.4126 -5.4716 25 7 -1.0785 -7.2080 -6.1711 26 14 -3.2908 -5.5440 -6.3004 27 1 -2.8372 -4.2298 -6.8223 28 1 -3.7919 -6.3763 -7.4235 29 1 -4.3813 -5.3351 -5.3142 30 6 1.1474 -4.7754 -0.8337 31 1 -0.3634 -0.0209 1.0274 32 1 -0.3634 0.9004 -0.4956 33 1 -0.3634 -0.8792 -0.5319 34 1 3.9734 2.1533 -0.0001 35 1 5.3152 0.0909 -0.0024 36 1 4.1660 -2.1102 0.0077 37 1 3.0329 -2.1302 -1.9500 38 1 3.6374 -3.8017 -1.8162 39 1 2.8637 -3.4214 -4.1035 40 1 1.2908 -2.8389 -3.5060 41 1 2.4213 -5.6405 -3.0676 42 1 1.1649 -5.2106 -4.2525 43 1 2.0921 -7.0851 -2.1807 44 1 1.1245 -7.8311 -0.8668 45 1 0.0493 -9.3697 -2.3793 46 1 1.6851 -9.2678 -3.1130 47 1 -0.4744 -8.6545 -4.6218 48 1 0.9846 -7.6237 -4.7234 49 1 -1.2457 -7.3429 -7.1171 50 1 1.8989 -5.5263 -0.5894 51 1 0.3710 -4.7730 -0.0686 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963349182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:16 Heat of formation + Delta-G solvation = 23.371252 kcal Electronic energy + Delta-G solvation = -31406.980279 eV Core-core repulsion = 27499.603004 eV Total energy + Delta-G solvation = -3907.377275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.07918 -39.61782 -38.23049 -36.46364 -33.54846 -33.06918 -32.53656 -32.06682 -31.17649 -29.33970 -28.07056 -26.69989 -25.76512 -24.53669 -23.97393 -22.79000 -22.23740 -21.35644 -20.29247 -19.43846 -18.37779 -17.45717 -17.01783 -16.61831 -16.45427 -16.04448 -15.17243 -14.95460 -14.59384 -14.46665 -14.36923 -14.13972 -13.90088 -13.79547 -13.48872 -13.23835 -13.04933 -12.75952 -12.60763 -12.33385 -12.20163 -12.14714 -12.07844 -11.86817 -11.56503 -11.13438 -10.90796 -10.84621 -10.73545 -10.46340 -10.26830 -10.24450 -10.09769 -9.98302 -9.92799 -9.76330 -9.65872 -9.54289 -9.44683 -9.19623 -8.57265 -8.49823 -6.75856 -5.74337 -3.08731 0.54730 0.90555 2.59356 2.95773 3.38836 3.45489 3.46333 3.48741 3.99879 4.30187 4.44984 4.49136 4.50087 4.75208 4.88151 5.07049 5.13425 5.22760 5.23612 5.28153 5.41242 5.42064 5.45568 5.55519 5.57217 5.71511 5.71709 5.72916 5.77195 5.80944 5.84228 5.91549 5.94069 5.96450 6.06892 6.18302 6.26945 6.33361 6.36396 6.45597 6.54265 6.61052 6.67561 6.77175 6.99358 7.03153 7.15606 7.37989 7.55697 7.64089 7.65567 7.81768 8.09686 8.29713 9.21663 9.82693 10.51775 11.37662 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013912 B = 0.003232 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.237833 B = 8661.713390 C = 9549.340709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.178 3.822 3 N -0.487 5.487 4 C 0.119 3.881 5 C -0.187 4.187 6 C -0.041 4.041 7 C -0.176 4.176 8 C 0.563 3.437 9 O -0.531 6.531 10 N -0.598 5.598 11 C 0.105 3.895 12 C -0.135 4.135 13 C -0.105 4.105 14 C -0.104 4.104 15 H 0.071 0.929 16 C 0.168 3.832 17 H 0.033 0.967 18 C -0.130 4.130 19 C -0.150 4.150 20 C 0.174 3.826 21 N -0.590 5.590 22 C -0.223 4.223 23 H 0.072 0.928 24 C -0.003 4.003 25 N -0.917 5.917 26 Si 0.905 3.095 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.115 3.885 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.024 0.976 49 H 0.252 0.748 50 H 0.067 0.933 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.594 10.260 10.611 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.040 3.960 3 N -0.196 5.196 4 C -0.038 4.038 5 C -0.206 4.206 6 C -0.068 4.068 7 C -0.181 4.181 8 C 0.350 3.650 9 O -0.409 6.409 10 N -0.330 5.330 11 C -0.018 4.018 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.125 4.125 15 H 0.089 0.911 16 C 0.059 3.941 17 H 0.051 0.949 18 C -0.168 4.168 19 C -0.188 4.188 20 C 0.050 3.950 21 N -0.314 5.314 22 C -0.352 4.352 23 H 0.090 0.910 24 C -0.200 4.200 25 N -0.564 5.564 26 Si 0.736 3.264 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.007 4.007 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.062 0.938 50 H 0.086 0.914 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.524 10.899 10.810 19.811 hybrid contribution 0.011 -0.221 -0.640 0.677 sum 12.535 10.678 10.170 19.354 Atomic orbital electron populations 1.20799 0.87901 1.03635 1.04013 1.21412 0.97347 0.86620 0.90580 1.67611 1.10031 1.28576 1.13426 1.22945 0.89392 0.98748 0.92761 1.22063 1.01733 0.93011 1.03827 1.21746 0.92823 0.99086 0.93097 1.20830 0.94757 0.95143 1.07357 1.18072 0.82680 0.82949 0.81322 1.90790 1.30944 1.79908 1.39213 1.48107 1.42791 1.13453 1.28616 1.21821 0.91269 1.01102 0.87570 1.21869 1.00728 0.99409 0.95268 1.21488 0.97545 0.93586 1.01594 1.21957 0.97889 1.00383 0.92309 0.91065 1.20874 0.92783 0.90491 0.89908 0.94888 1.22690 0.98679 0.96903 0.98491 1.23007 0.99661 0.96907 0.99252 1.21398 0.94261 0.88655 0.90720 1.44461 1.35573 1.35432 1.15906 1.18938 1.02983 1.22273 0.90994 0.90984 1.24839 0.99017 1.00014 0.96099 1.69932 1.39269 1.39936 1.07265 0.86226 0.81981 0.79022 0.79214 1.21649 1.21756 1.20676 1.21879 0.97671 0.81424 0.99739 0.89402 0.90325 0.90269 0.82315 0.84152 0.84243 0.90429 0.91394 0.91154 0.91751 0.92704 0.89191 0.91517 0.92612 0.92510 0.92627 0.91397 0.95750 0.93804 0.91441 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 9.20 36.00 0.33 -0.98 16 2 C 0.18 2.29 6.82 -82.18 -0.56 1.73 16 3 N -0.49 -5.81 10.26 -9.15 -0.09 -5.91 16 4 C 0.12 1.05 11.17 -17.47 -0.20 0.86 16 5 C -0.19 -1.43 10.10 -39.50 -0.40 -1.83 16 6 C -0.04 -0.39 7.79 -38.87 -0.30 -0.69 16 7 C -0.18 -2.19 4.73 -104.82 -0.50 -2.68 16 8 C 0.56 8.26 6.25 -12.33 -0.08 8.19 16 9 O -0.53 -9.41 15.26 5.32 0.08 -9.33 16 10 N -0.60 -8.18 2.98 -174.15 -0.52 -8.70 16 11 C 0.11 1.20 5.40 -3.93 -0.02 1.18 16 12 C -0.13 -1.84 6.06 -26.83 -0.16 -2.00 16 13 C -0.10 -1.74 4.74 -26.69 -0.13 -1.87 16 14 C -0.10 -1.81 2.10 -90.50 -0.19 -2.00 16 15 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 16 C 0.17 3.24 2.95 -66.96 -0.20 3.05 16 17 H 0.03 0.67 8.14 -51.94 -0.42 0.25 16 18 C -0.13 -2.12 5.11 -24.89 -0.13 -2.25 16 19 C -0.15 -2.70 7.09 -24.58 -0.17 -2.88 16 20 C 0.17 4.01 5.41 -2.53 -0.01 4.00 16 21 N -0.59 -14.01 2.29 -162.58 -0.37 -14.38 16 22 C -0.22 -5.94 9.85 -15.06 -0.15 -6.09 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 25 N -0.92 -25.92 10.57 55.49 0.59 -25.33 16 26 Si 0.90 21.80 29.55 -169.99 -5.02 16.78 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 C 0.11 1.71 5.58 -3.71 -0.02 1.69 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.08 1.08 6.84 -51.93 -0.36 0.73 16 34 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 36 H 0.14 1.06 7.58 -52.49 -0.40 0.66 16 37 H 0.08 0.80 5.26 -51.93 -0.27 0.53 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.85 6.11 -51.93 -0.32 0.53 16 42 H 0.09 1.91 7.53 -51.93 -0.39 1.51 16 43 H 0.07 1.02 5.52 -51.93 -0.29 0.73 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.78 6.93 -51.93 -0.36 1.42 16 48 H 0.02 0.60 8.06 -51.93 -0.42 0.18 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.07 0.91 6.93 -51.93 -0.36 0.55 16 51 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -30.96 389.37 -10.59 -41.55 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.14 Total: 2.21 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.98 Total: -2.76 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.40 Total: -54.31 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.96 -10.59 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963349182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.918 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds