Wall clock time and date at job start Wed Apr 1 2020 02:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38172 * 119.55206 * 2 1 4 4 C 1.39797 * 118.99983 * 180.27215 * 3 2 1 5 5 C 1.48149 * 120.92423 * 179.70713 * 4 3 2 6 6 O 1.21515 * 119.99852 * 134.90972 * 5 4 3 7 7 N 1.34777 * 119.99942 * 314.91848 * 5 4 3 8 8 C 1.46921 * 120.63436 * 4.58233 * 7 5 4 9 9 C 1.53189 * 108.77934 * 233.59116 * 8 7 5 10 10 C 1.53043 * 109.31283 * 305.36598 * 9 8 7 11 11 C 1.53032 * 109.53663 * 61.36573 * 10 9 8 12 12 H 1.09001 * 109.52994 * 58.60275 * 11 10 9 13 13 C 1.53001 * 109.49866 * 178.68563 * 11 10 9 14 14 H 1.09008 * 109.87025 * 300.46713 * 13 11 10 15 15 C 1.54323 * 110.01051 * 61.55911 * 13 11 10 16 16 C 1.55446 * 102.96763 * 141.68434 * 15 13 11 17 17 C 1.54915 * 101.45337 * 324.52275 * 16 15 13 18 18 N 1.47020 * 109.88682 * 179.45083 * 13 11 10 19 19 C 1.36938 * 125.64870 * 61.50711 * 18 13 11 20 20 H 1.08003 * 120.00048 * 14.90841 * 19 18 13 21 21 C 1.38809 * 119.99879 * 194.91668 * 19 18 13 22 22 N 1.31622 * 119.99943 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47211 * 89.99687 * 23 21 19 25 25 H 1.48501 * 109.47131 * 209.99487 * 23 21 19 26 26 H 1.48500 * 109.47453 * 329.99556 * 23 21 19 27 27 C 1.46927 * 120.62912 * 184.56957 * 7 5 4 28 28 C 1.39837 * 118.15519 * 359.44618 * 4 3 2 29 29 C 1.38126 * 119.00132 * 0.26495 * 28 4 3 30 30 N 1.31795 * 119.55534 * 179.70156 * 2 1 3 31 31 H 1.09002 * 109.46525 * 270.30051 * 1 2 3 32 32 H 1.08995 * 109.47015 * 30.29738 * 1 2 3 33 33 H 1.08996 * 109.47494 * 150.30480 * 1 2 3 34 34 H 1.08003 * 120.50258 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.58699 * 353.38161 * 8 7 5 36 36 H 1.09002 * 109.58619 * 113.79874 * 8 7 5 37 37 H 1.09001 * 109.49566 * 65.31602 * 9 8 7 38 38 H 1.09000 * 109.49816 * 185.38143 * 9 8 7 39 39 H 1.09004 * 109.45782 * 301.34148 * 10 9 8 40 40 H 1.08998 * 109.45693 * 181.38774 * 10 9 8 41 41 H 1.08996 * 110.72821 * 260.05083 * 15 13 11 42 42 H 1.08999 * 110.72260 * 23.32813 * 15 13 11 43 43 H 1.09003 * 111.12155 * 206.46639 * 16 15 13 44 44 H 1.09003 * 111.01249 * 82.52358 * 16 15 13 45 45 H 1.09001 * 110.36120 * 278.10715 * 17 16 15 46 46 H 1.08999 * 110.36560 * 155.89523 * 17 16 15 47 47 H 0.96999 * 119.99298 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58915 * 6.61776 * 27 7 5 49 49 H 1.09001 * 109.70312 * 246.26799 * 27 7 5 50 50 H 1.08000 * 120.49879 * 180.29560 * 28 4 3 51 51 H 1.08001 * 119.55462 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0058 5 6 4.3599 2.4520 -0.0125 6 8 5.3139 2.5843 0.7284 7 7 4.0054 3.4548 -0.8404 8 6 2.7967 3.3496 -1.6690 9 6 3.1761 3.6109 -3.1299 10 6 3.8937 4.9588 -3.2333 11 6 5.1770 4.9205 -2.4004 12 1 5.8199 4.1164 -2.7585 13 6 5.9103 6.2570 -2.5305 14 1 6.1573 6.4438 -3.5757 15 6 5.0261 7.3995 -1.9879 16 6 6.0505 8.3225 -1.2701 17 6 7.0474 7.2861 -0.6940 18 7 7.1385 6.2342 -1.7229 19 6 8.1929 5.3780 -1.8976 20 1 8.2808 4.8091 -2.8114 21 6 9.1485 5.2412 -0.9001 22 7 9.0414 5.9347 0.2134 23 14 10.5863 4.0727 -1.1381 24 1 11.7143 4.7990 -1.7748 25 1 11.0189 3.5450 0.1808 26 1 10.1688 2.9451 -2.0096 27 6 4.8202 4.6740 -0.9311 28 6 4.2343 -0.0507 0.0005 29 6 3.4741 -1.2039 0.0066 30 7 2.1571 -1.1464 0.0060 31 1 -0.3632 0.0054 1.0277 32 1 -0.3633 0.8873 -0.5184 33 1 -0.3634 -0.8926 -0.5091 34 1 1.6494 2.1378 -0.0004 35 1 2.3747 2.3491 -1.5744 36 1 2.0651 4.0892 -1.3435 37 1 3.8373 2.8189 -3.4813 38 1 2.2744 3.6304 -3.7421 39 1 3.2409 5.7473 -2.8586 40 1 4.1429 5.1585 -4.2754 41 1 4.5362 7.9294 -2.8047 42 1 4.2913 7.0157 -1.2802 43 1 5.5741 8.8920 -0.4721 44 1 6.5437 8.9858 -1.9806 45 1 6.6665 6.8718 0.2395 46 1 8.0226 7.7460 -0.5342 47 1 9.7094 5.8393 0.9102 48 1 5.7335 4.5474 -0.3496 49 1 4.2559 5.5228 -0.5448 50 1 5.3130 -0.1052 0.0012 51 1 3.9653 -2.1657 0.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963376894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:24 Heat of formation + Delta-G solvation = 30.533270 kcal Electronic energy + Delta-G solvation = -31550.649715 eV Core-core repulsion = 27643.583008 eV Total energy + Delta-G solvation = -3907.066706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.94603 -39.58794 -38.13435 -36.45046 -33.50160 -33.16026 -32.49647 -32.09784 -30.95148 -29.25340 -27.95244 -26.76014 -25.92740 -24.50010 -23.84477 -23.05385 -22.42682 -21.08909 -20.12158 -19.31115 -18.39511 -17.40480 -16.84382 -16.57226 -16.24660 -15.81097 -15.23903 -14.85497 -14.75426 -14.51108 -14.42137 -14.09039 -13.84903 -13.80309 -13.56003 -13.12975 -13.02787 -12.84516 -12.61313 -12.54229 -12.18482 -11.95614 -11.87276 -11.64864 -11.50994 -11.28519 -11.01265 -10.87252 -10.75356 -10.65243 -10.19367 -10.17161 -10.04143 -9.93348 -9.82384 -9.78709 -9.59898 -9.55523 -9.36025 -9.11317 -8.50831 -8.33490 -6.71101 -5.67952 -3.03080 0.73356 0.86833 2.81324 3.10360 3.44196 3.49957 3.52052 3.59044 4.04900 4.27461 4.54460 4.56954 4.72208 4.83173 4.87027 4.98868 5.07960 5.17921 5.29988 5.30592 5.31842 5.36602 5.41850 5.49138 5.57830 5.60036 5.65327 5.67714 5.72631 5.81408 5.85244 5.90584 5.93059 5.98404 6.07460 6.17100 6.20859 6.34782 6.38142 6.42087 6.50967 6.60555 6.71250 6.81614 6.83993 6.99704 7.08669 7.57302 7.59818 7.68429 7.73052 7.86481 8.30782 8.35338 9.26900 9.88368 10.56488 11.44264 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003815 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.884031 B = 7337.181380 C = 8845.532602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.150 4.150 4 C -0.066 4.066 5 C 0.549 3.451 6 O -0.512 6.512 7 N -0.600 5.600 8 C 0.091 3.909 9 C -0.133 4.133 10 C -0.115 4.115 11 C -0.106 4.106 12 H 0.071 0.929 13 C 0.169 3.831 14 H 0.035 0.965 15 C -0.129 4.129 16 C -0.150 4.150 17 C 0.173 3.827 18 N -0.593 5.593 19 C -0.229 4.229 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.913 5.913 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.125 3.875 28 C -0.131 4.131 29 C 0.104 3.896 30 N -0.477 5.477 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.068 0.932 47 H 0.252 0.748 48 H 0.113 0.887 49 H 0.063 0.937 50 H 0.144 0.856 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.871 -6.594 -4.096 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.170 4.170 4 C -0.077 4.077 5 C 0.336 3.664 6 O -0.387 6.387 7 N -0.332 5.332 8 C -0.032 4.032 9 C -0.171 4.171 10 C -0.153 4.153 11 C -0.127 4.127 12 H 0.090 0.910 13 C 0.060 3.940 14 H 0.052 0.948 15 C -0.167 4.167 16 C -0.189 4.189 17 C 0.048 3.952 18 N -0.317 5.317 19 C -0.358 4.358 20 H 0.089 0.911 21 C -0.195 4.195 22 N -0.559 5.559 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.004 3.996 28 C -0.151 4.151 29 C -0.053 4.053 30 N -0.188 5.188 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.132 0.868 49 H 0.081 0.919 50 H 0.162 0.838 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.598 -7.324 -3.542 20.300 hybrid contribution 1.341 0.091 -0.137 1.351 sum -17.257 -7.233 -3.679 19.070 Atomic orbital electron populations 1.20719 0.88442 1.03606 1.03265 1.21242 0.97145 0.87902 0.95320 1.22219 0.93416 0.99957 1.01385 1.20485 0.93981 0.94746 0.98534 1.18246 0.84099 0.82867 0.81228 1.90895 1.27590 1.80761 1.39405 1.48116 1.26222 1.18136 1.40769 1.22180 0.87207 1.02594 0.91216 1.21911 1.00689 0.99073 0.95468 1.21613 0.97210 0.96097 1.00418 1.21959 0.95375 1.01336 0.94045 0.91045 1.20903 0.87069 0.90932 0.95078 0.94780 1.22726 0.97633 0.96962 0.99353 1.23071 0.98256 0.98284 0.99281 1.21410 0.96793 0.86619 0.90402 1.44489 1.13999 1.37487 1.35684 1.18859 0.99771 1.17368 0.99790 0.91107 1.24842 0.99628 0.99449 0.95618 1.69916 1.35908 1.43169 1.06863 0.86227 0.82495 0.80792 0.76872 1.21727 1.21635 1.20773 1.21833 0.96348 0.83338 0.98054 1.22270 1.02345 0.91728 0.98802 1.22726 0.89049 0.98379 0.95145 1.67381 1.10303 1.29375 1.11725 0.90278 0.90558 0.90306 0.83903 0.89268 0.91271 0.91724 0.91187 0.91950 0.91985 0.92550 0.91680 0.92563 0.92474 0.95724 0.91341 0.93736 0.86836 0.91915 0.83782 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.16 36.01 0.37 -0.35 16 2 C 0.12 1.27 6.78 -82.63 -0.56 0.71 16 3 C -0.15 -1.66 7.07 -39.02 -0.28 -1.94 16 4 C -0.07 -0.93 5.24 -104.65 -0.55 -1.48 16 5 C 0.55 9.77 7.36 -12.19 -0.09 9.68 16 6 O -0.51 -11.70 16.44 5.35 0.09 -11.61 16 7 N -0.60 -9.56 2.97 -173.77 -0.52 -10.08 16 8 C 0.09 1.03 5.26 -3.72 -0.02 1.01 16 9 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 10 C -0.12 -1.50 4.93 -26.69 -0.13 -1.63 16 11 C -0.11 -1.86 2.11 -90.50 -0.19 -2.05 16 12 H 0.07 1.46 8.00 -51.93 -0.42 1.05 16 13 C 0.17 3.28 2.93 -66.95 -0.20 3.08 16 14 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 15 C -0.13 -2.13 5.25 -24.74 -0.13 -2.26 16 16 C -0.15 -2.77 7.11 -24.42 -0.17 -2.94 16 17 C 0.17 4.12 5.40 -2.53 -0.01 4.10 16 18 N -0.59 -14.50 2.49 -162.57 -0.41 -14.91 16 19 C -0.23 -6.31 9.81 -15.06 -0.15 -6.45 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 21 C 0.00 0.06 5.47 -17.43 -0.10 -0.04 16 22 N -0.91 -27.05 10.58 55.49 0.59 -26.47 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.12 2.33 5.28 -3.71 -0.02 2.31 16 28 C -0.13 -1.71 9.82 -39.02 -0.38 -2.09 16 29 C 0.10 1.16 11.17 -17.60 -0.20 0.97 16 30 N -0.48 -5.64 10.25 -9.52 -0.10 -5.74 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.14 1.29 6.56 -52.48 -0.34 0.94 16 35 H 0.09 0.90 4.14 -51.93 -0.22 0.68 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.75 7.21 -51.93 -0.37 0.37 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.02 5.43 -51.93 -0.28 0.74 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.65 8.05 -51.93 -0.42 0.23 16 46 H 0.07 1.84 6.94 -51.93 -0.36 1.48 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 48 H 0.11 2.79 6.70 -51.93 -0.35 2.44 16 49 H 0.06 1.11 5.85 -51.93 -0.30 0.81 16 50 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 51 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -33.36 391.47 -10.53 -43.89 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.10 Total: 2.26 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.97 Total: -1.01 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.43 Total: -57.19 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.36 -10.53 -43.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963376894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.425 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds