Wall clock time and date at job start Wed Apr 1 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38172 * 119.55206 * 2 1 4 4 C 1.39797 * 118.99983 * 180.27215 * 3 2 1 5 5 C 1.48149 * 120.92423 * 179.70713 * 4 3 2 6 6 O 1.21515 * 119.99852 * 134.90972 * 5 4 3 7 7 N 1.34777 * 119.99942 * 314.91848 * 5 4 3 8 8 C 1.46921 * 120.63436 * 4.58233 * 7 5 4 9 9 C 1.53189 * 108.77934 * 233.59116 * 8 7 5 10 10 C 1.53043 * 109.31283 * 305.36598 * 9 8 7 11 11 C 1.53032 * 109.53663 * 61.36573 * 10 9 8 12 12 H 1.09001 * 109.52994 * 58.60275 * 11 10 9 13 13 C 1.53001 * 109.49866 * 178.68563 * 11 10 9 14 14 H 1.09008 * 109.87025 * 300.46713 * 13 11 10 15 15 C 1.54323 * 110.01051 * 61.55911 * 13 11 10 16 16 C 1.55446 * 102.96763 * 141.68434 * 15 13 11 17 17 C 1.54915 * 101.45337 * 324.52275 * 16 15 13 18 18 N 1.47020 * 109.88682 * 179.45083 * 13 11 10 19 19 C 1.36938 * 125.64870 * 61.50711 * 18 13 11 20 20 H 1.08003 * 120.00048 * 14.90841 * 19 18 13 21 21 C 1.38809 * 119.99879 * 194.91668 * 19 18 13 22 22 N 1.31622 * 119.99943 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99899 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.47211 * 89.99687 * 23 21 19 25 25 H 1.48501 * 109.47131 * 209.99487 * 23 21 19 26 26 H 1.48500 * 109.47453 * 329.99556 * 23 21 19 27 27 C 1.46927 * 120.62912 * 184.56957 * 7 5 4 28 28 C 1.39837 * 118.15519 * 359.44618 * 4 3 2 29 29 C 1.38126 * 119.00132 * 0.26495 * 28 4 3 30 30 N 1.31795 * 119.55534 * 179.70156 * 2 1 3 31 31 H 1.09002 * 109.46525 * 270.30051 * 1 2 3 32 32 H 1.08995 * 109.47015 * 30.29738 * 1 2 3 33 33 H 1.08996 * 109.47494 * 150.30480 * 1 2 3 34 34 H 1.08003 * 120.50258 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.58699 * 353.38161 * 8 7 5 36 36 H 1.09002 * 109.58619 * 113.79874 * 8 7 5 37 37 H 1.09001 * 109.49566 * 65.31602 * 9 8 7 38 38 H 1.09000 * 109.49816 * 185.38143 * 9 8 7 39 39 H 1.09004 * 109.45782 * 301.34148 * 10 9 8 40 40 H 1.08998 * 109.45693 * 181.38774 * 10 9 8 41 41 H 1.08996 * 110.72821 * 260.05083 * 15 13 11 42 42 H 1.08999 * 110.72260 * 23.32813 * 15 13 11 43 43 H 1.09003 * 111.12155 * 206.46639 * 16 15 13 44 44 H 1.09003 * 111.01249 * 82.52358 * 16 15 13 45 45 H 1.09001 * 110.36120 * 278.10715 * 17 16 15 46 46 H 1.08999 * 110.36560 * 155.89523 * 17 16 15 47 47 H 0.96999 * 119.99298 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58915 * 6.61776 * 27 7 5 49 49 H 1.09001 * 109.70312 * 246.26799 * 27 7 5 50 50 H 1.08000 * 120.49879 * 180.29560 * 28 4 3 51 51 H 1.08001 * 119.55462 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0058 5 6 4.3599 2.4520 -0.0125 6 8 5.3139 2.5843 0.7284 7 7 4.0054 3.4548 -0.8404 8 6 2.7967 3.3496 -1.6690 9 6 3.1761 3.6109 -3.1299 10 6 3.8937 4.9588 -3.2333 11 6 5.1770 4.9205 -2.4004 12 1 5.8199 4.1164 -2.7585 13 6 5.9103 6.2570 -2.5305 14 1 6.1573 6.4438 -3.5757 15 6 5.0261 7.3995 -1.9879 16 6 6.0505 8.3225 -1.2701 17 6 7.0474 7.2861 -0.6940 18 7 7.1385 6.2342 -1.7229 19 6 8.1929 5.3780 -1.8976 20 1 8.2808 4.8091 -2.8114 21 6 9.1485 5.2412 -0.9001 22 7 9.0414 5.9347 0.2134 23 14 10.5863 4.0727 -1.1381 24 1 11.7143 4.7990 -1.7748 25 1 11.0189 3.5450 0.1808 26 1 10.1688 2.9451 -2.0096 27 6 4.8202 4.6740 -0.9311 28 6 4.2343 -0.0507 0.0005 29 6 3.4741 -1.2039 0.0066 30 7 2.1571 -1.1464 0.0060 31 1 -0.3632 0.0054 1.0277 32 1 -0.3633 0.8873 -0.5184 33 1 -0.3634 -0.8926 -0.5091 34 1 1.6494 2.1378 -0.0004 35 1 2.3747 2.3491 -1.5744 36 1 2.0651 4.0892 -1.3435 37 1 3.8373 2.8189 -3.4813 38 1 2.2744 3.6304 -3.7421 39 1 3.2409 5.7473 -2.8586 40 1 4.1429 5.1585 -4.2754 41 1 4.5362 7.9294 -2.8047 42 1 4.2913 7.0157 -1.2802 43 1 5.5741 8.8920 -0.4721 44 1 6.5437 8.9858 -1.9806 45 1 6.6665 6.8718 0.2395 46 1 8.0226 7.7460 -0.5342 47 1 9.7094 5.8393 0.9102 48 1 5.7335 4.5474 -0.3496 49 1 4.2559 5.5228 -0.5448 50 1 5.3130 -0.1052 0.0012 51 1 3.9653 -2.1657 0.0119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963376894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:23 Heat of formation + Delta-G solvation = 9.811042 kcal Electronic energy + Delta-G solvation = -31551.548298 eV Core-core repulsion = 27643.583008 eV Total energy + Delta-G solvation = -3907.965290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05494 -40.77419 -39.64488 -37.89809 -34.95421 -34.26928 -33.94313 -33.25681 -32.23220 -31.16434 -28.80908 -28.17693 -27.10647 -26.49293 -24.85914 -24.28830 -23.50950 -22.37752 -21.81910 -20.65434 -19.77629 -18.76727 -18.41201 -17.85064 -17.25616 -17.14829 -16.76793 -16.41839 -15.90990 -15.78870 -15.63113 -15.55903 -15.31321 -14.99924 -14.47707 -14.37164 -14.28534 -14.10194 -13.91568 -13.69066 -13.32475 -13.13843 -13.04683 -12.99941 -12.91701 -12.81595 -12.72995 -12.66900 -12.15219 -12.03779 -11.85763 -11.78438 -11.57128 -11.44883 -11.34539 -11.17998 -11.13648 -10.88703 -10.66236 -10.45700 -9.96584 -9.67066 -8.75815 -7.87823 -5.21261 -0.28620 -0.01031 1.35163 1.38959 1.45343 1.49651 1.87535 2.45548 2.65300 3.19351 3.30511 3.32453 3.62736 3.73556 3.80898 3.89901 3.90536 3.94818 4.07241 4.12682 4.14402 4.30023 4.30809 4.37259 4.40220 4.49949 4.56636 4.60702 4.63837 4.78309 4.83046 4.85641 4.90398 4.95035 4.98255 5.00115 5.00450 5.07749 5.16008 5.21864 5.22483 5.29700 5.35814 5.46135 5.49009 5.58649 5.59611 5.62421 5.67995 5.81179 6.25910 6.28964 6.85780 6.96743 7.11909 7.82198 8.48005 9.23400 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003815 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.884031 B = 7337.181380 C = 8845.532602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.126 3.874 3 C -0.140 4.140 4 C -0.084 4.084 5 C 0.541 3.459 6 O -0.584 6.584 7 N -0.596 5.596 8 C 0.084 3.916 9 C -0.129 4.129 10 C -0.107 4.107 11 C -0.095 4.095 12 H 0.028 0.972 13 C 0.157 3.843 14 H 0.037 0.963 15 C -0.113 4.113 16 C -0.136 4.136 17 C 0.177 3.823 18 N -0.611 5.611 19 C -0.226 4.226 20 H 0.068 0.932 21 C -0.059 4.059 22 N -0.942 5.942 23 Si 0.960 3.040 24 H -0.279 1.279 25 H -0.300 1.300 26 H -0.276 1.276 27 C 0.136 3.864 28 C -0.152 4.152 29 C 0.111 3.889 30 N -0.489 5.489 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.170 0.830 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.064 0.936 45 H -0.013 1.013 46 H 0.026 0.974 47 H 0.243 0.757 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.128 0.872 51 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.914 -6.549 -6.501 25.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.012 4.012 3 C -0.160 4.160 4 C -0.095 4.095 5 C 0.330 3.670 6 O -0.464 6.464 7 N -0.327 5.327 8 C -0.037 4.037 9 C -0.167 4.167 10 C -0.145 4.145 11 C -0.116 4.116 12 H 0.047 0.953 13 C 0.050 3.950 14 H 0.054 0.946 15 C -0.150 4.150 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.335 5.335 19 C -0.356 4.356 20 H 0.086 0.914 21 C -0.253 4.253 22 N -0.591 5.591 23 Si 0.789 3.211 24 H -0.206 1.206 25 H -0.227 1.227 26 H -0.201 1.201 27 C 0.015 3.985 28 C -0.173 4.173 29 C -0.045 4.045 30 N -0.199 5.199 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.188 0.812 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.005 0.995 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.095 0.905 50 H 0.146 0.854 51 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -23.709 -7.279 -6.027 25.523 hybrid contribution 2.847 0.048 0.573 2.904 sum -20.862 -7.232 -5.453 22.743 Atomic orbital electron populations 1.20871 0.85365 1.05229 1.04421 1.21898 0.98987 0.87076 0.93237 1.22436 0.91683 1.01568 1.00342 1.20281 0.95295 0.92867 1.01019 1.18934 0.83497 0.84219 0.80385 1.90853 1.30904 1.82152 1.42478 1.48235 1.27120 1.16680 1.40619 1.22627 0.85544 1.04886 0.90632 1.21926 1.01915 0.97112 0.95713 1.21580 0.94687 0.98261 0.99945 1.21768 0.97301 0.98550 0.93990 0.95292 1.21219 0.85972 0.93406 0.94355 0.94550 1.22710 0.96645 0.95107 1.00571 1.22933 0.97271 0.97171 1.00108 1.21165 0.96198 0.87762 0.89646 1.44716 1.15455 1.37231 1.36124 1.19111 1.00410 1.16777 0.99276 0.91370 1.25548 1.02432 1.01449 0.95836 1.70127 1.36527 1.44907 1.07543 0.85351 0.80201 0.79287 0.76231 1.20571 1.22716 1.20144 1.21439 0.94288 0.85022 0.97800 1.22295 1.02004 0.92519 1.00435 1.23060 0.89029 0.98595 0.93865 1.67517 1.10225 1.30173 1.12014 0.89182 0.87784 0.89887 0.81225 0.87514 0.87794 0.93692 0.86709 0.89302 0.90778 0.88209 0.90484 0.90058 0.91680 0.99457 0.95512 0.94798 0.93907 0.90451 0.85350 0.79441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.16 71.24 0.72 -0.23 16 2 C 0.13 2.24 6.78 42.55 0.29 2.53 16 3 C -0.14 -2.75 7.07 22.63 0.16 -2.59 16 4 C -0.08 -2.37 5.24 -19.88 -0.10 -2.48 16 5 C 0.54 20.34 7.36 86.88 0.64 20.98 16 6 O -0.58 -29.47 16.44 -3.76 -0.06 -29.53 16 7 N -0.60 -19.03 2.97 -821.97 -2.44 -21.47 16 8 C 0.08 1.59 5.26 86.36 0.45 2.04 16 9 C -0.13 -2.34 6.08 30.67 0.19 -2.15 16 10 C -0.11 -2.37 4.93 30.62 0.15 -2.22 16 11 C -0.09 -3.32 2.11 -10.72 -0.02 -3.34 16 12 H 0.03 1.24 8.00 -2.39 -0.02 1.22 16 13 C 0.16 6.04 2.93 45.34 0.13 6.17 16 14 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 15 C -0.11 -3.37 5.25 31.88 0.17 -3.20 16 16 C -0.14 -4.84 7.11 32.09 0.23 -4.61 16 17 C 0.18 8.93 5.40 86.86 0.47 9.39 16 18 N -0.61 -31.35 2.49 -668.24 -1.66 -33.02 16 19 C -0.23 -13.17 9.81 84.03 0.82 -12.35 16 20 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 21 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 22 N -0.94 -60.30 10.58 21.65 0.23 -60.07 16 23 Si 0.96 49.65 29.55 68.60 2.03 51.68 16 24 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.30 -15.90 7.11 99.48 0.71 -15.19 16 26 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 27 C 0.14 5.26 5.28 86.36 0.46 5.72 16 28 C -0.15 -4.13 9.82 22.63 0.22 -3.91 16 29 C 0.11 2.39 11.17 84.67 0.95 3.34 16 30 N -0.49 -10.46 10.25 -184.05 -1.89 -12.34 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.43 8.08 -2.39 -0.02 0.42 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.17 2.32 6.56 -2.91 -0.02 2.30 16 35 H 0.11 1.71 4.14 -2.39 -0.01 1.70 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.58 7.21 -2.39 -0.02 1.56 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.08 2.14 5.43 -2.39 -0.01 2.12 16 43 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H -0.01 -0.71 8.05 -2.39 -0.02 -0.73 16 46 H 0.03 1.53 6.94 -2.39 -0.02 1.52 16 47 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.04 2.29 6.70 -2.39 -0.02 2.27 16 49 H 0.08 2.70 5.85 -2.39 -0.01 2.69 16 50 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 51 H 0.19 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -84.84 391.47 3.51 -81.33 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.92 Total: 13.45 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.39 Total: 9.98 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -5.76 Total: -126.90 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.06 Total: -29.53 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.03 Total: 51.68 kcal Total: -84.84 3.51 -81.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963376894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.140 kcal (2) G-P(sol) polarization free energy of solvation -84.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds