Wall clock time and date at job start Wed Apr 1 2020 02:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38672 * 120.78968 * 2 1 4 4 C 1.38183 * 119.15894 * 180.27509 * 3 2 1 5 5 N 1.31885 * 120.77206 * 359.74750 * 4 3 2 6 6 C 1.31857 * 121.71731 * 359.97438 * 5 4 3 7 7 C 1.38222 * 120.76923 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.41962 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47064 * 264.99864 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.03414 * 33.96092 * 12 11 9 14 14 C 1.52523 * 109.04506 * 275.00357 * 12 11 9 15 15 C 1.53813 * 111.70620 * 185.40171 * 14 12 11 16 16 C 1.51615 * 107.01930 * 57.53000 * 15 14 12 17 17 H 1.09001 * 110.50334 * 56.33254 * 16 15 14 18 18 C 1.53064 * 116.68111 * 183.73256 * 16 15 14 19 19 N 1.48664 * 103.44688 * 155.89323 * 18 16 15 20 20 C 1.36936 * 125.78129 * 155.65736 * 19 18 16 21 21 H 1.08001 * 119.99641 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00404 * 359.97401 * 20 19 18 23 23 N 1.31622 * 119.99959 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47017 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47093 * 120.00138 * 24 22 20 27 27 H 1.48501 * 109.47544 * 240.00344 * 24 22 20 28 28 C 1.48242 * 108.43017 * 335.62339 * 19 18 16 29 29 C 1.52335 * 105.86734 * 356.81806 * 28 19 18 30 30 H 1.09005 * 109.88162 * 272.32124 * 29 28 19 31 31 C 1.51440 * 117.44790 * 145.30551 * 29 28 19 32 32 H 1.09000 * 109.47207 * 270.24406 * 1 2 3 33 33 H 1.09003 * 109.47178 * 30.24854 * 1 2 3 34 34 H 1.08998 * 109.47588 * 150.24182 * 1 2 3 35 35 H 1.07996 * 120.41871 * 359.97359 * 3 2 1 36 36 H 1.08000 * 119.61147 * 179.72528 * 4 3 2 37 37 H 1.08011 * 119.61255 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47152 * 144.99957 * 8 7 6 39 39 H 1.09001 * 109.46980 * 25.00057 * 8 7 6 40 40 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.03222 * 305.97464 * 14 12 11 42 42 H 1.09003 * 109.03491 * 64.82391 * 14 12 11 43 43 H 1.08996 * 109.94514 * 176.91128 * 15 14 12 44 44 H 1.09000 * 109.94394 * 298.15485 * 15 14 12 45 45 H 1.09002 * 110.62598 * 274.38429 * 18 16 15 46 46 H 1.08992 * 110.62766 * 37.40046 * 18 16 15 47 47 H 0.97000 * 119.99967 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.17025 * 115.91454 * 28 19 18 49 49 H 1.09003 * 110.16657 * 237.72265 * 28 19 18 50 50 H 1.09005 * 109.94055 * 61.85275 * 31 29 28 51 51 H 1.08998 * 109.94269 * 300.61973 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1520 -0.0058 5 7 4.2403 0.0000 -0.0063 6 6 3.5982 -1.1516 -0.0008 7 6 2.2166 -1.1909 0.0052 8 6 1.4908 -2.5116 0.0108 9 6 1.1343 -2.8949 -1.4024 10 8 1.4399 -2.1675 -2.3234 11 7 0.4767 -4.0466 -1.6427 12 6 0.1306 -4.4194 -3.0165 13 1 0.9140 -4.0684 -3.6882 14 6 -1.1869 -3.7516 -3.3966 15 6 -1.6770 -4.2075 -4.7814 16 6 -1.8098 -5.7170 -4.7304 17 1 -2.4752 -6.0145 -3.9199 18 6 -2.2038 -6.4167 -6.0334 19 7 -1.6810 -7.7971 -5.8563 20 6 -2.1503 -8.9181 -6.4875 21 1 -1.6986 -9.8787 -6.2886 22 6 -3.2064 -8.8198 -7.3828 23 7 -3.7566 -7.6490 -7.6256 24 14 -3.8460 -10.3488 -8.2443 25 1 -3.0626 -11.5303 -7.8021 26 1 -5.2772 -10.5480 -7.9017 27 1 -3.7071 -10.1840 -9.7136 28 6 -0.5652 -7.7542 -4.8813 29 6 -0.3743 -6.2839 -4.5312 30 1 0.3099 -5.8196 -5.2414 31 6 0.0389 -5.9521 -3.1126 32 1 -0.3633 0.0044 1.0276 33 1 -0.3634 0.8878 -0.5177 34 1 -0.3634 -0.8921 -0.5100 35 1 1.6967 2.1377 -0.0004 36 1 4.1582 2.0753 -0.0103 37 1 4.1585 -2.0751 -0.0018 38 1 0.5806 -2.4235 0.6040 39 1 2.1339 -3.2778 0.4439 40 1 0.2326 -4.6285 -0.9061 41 1 -1.9414 -4.0042 -2.6516 42 1 -1.0475 -2.6706 -3.4070 43 1 -2.6447 -3.7563 -5.0004 44 1 -0.9522 -3.9236 -5.5444 45 1 -3.2875 -6.4286 -6.1504 46 1 -1.7297 -5.9332 -6.8875 47 1 -4.4948 -7.5803 -8.2510 48 1 -0.8245 -8.3226 -3.9882 49 1 0.3431 -8.1542 -5.3319 50 1 1.0098 -6.3970 -2.8945 51 1 -0.7076 -6.3245 -2.4112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979982375.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:19 Heat of formation + Delta-G solvation = 10.497458 kcal Electronic energy + Delta-G solvation = -29845.513095 eV Core-core repulsion = 25937.577571 eV Total energy + Delta-G solvation = -3907.935524 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90852 -39.97346 -38.77903 -35.76437 -34.64391 -33.59987 -32.78113 -31.84797 -30.70463 -29.20114 -28.48495 -27.59605 -26.12266 -24.95307 -23.21766 -22.28380 -22.03529 -20.89118 -20.46755 -19.75669 -19.34512 -17.33151 -17.08269 -16.75170 -16.71749 -16.24008 -15.19252 -15.17865 -14.92877 -14.68174 -14.33079 -14.22296 -13.86909 -13.76752 -13.56014 -13.37071 -13.16868 -13.01975 -12.94343 -12.50851 -12.46069 -12.16000 -12.01684 -11.89096 -11.69218 -11.61420 -11.34198 -10.94987 -10.84272 -10.67241 -10.50106 -10.17310 -10.02963 -9.88915 -9.87413 -9.71818 -9.67356 -9.59179 -9.30509 -9.18731 -8.99958 -8.64566 -6.81270 -5.63162 -3.04005 0.82257 0.99926 2.46893 2.99892 3.40354 3.45731 3.48292 3.57203 4.10802 4.30946 4.38841 4.49356 4.52559 4.61173 4.64634 4.81927 4.89234 5.00278 5.01344 5.15868 5.18481 5.19015 5.28137 5.32936 5.38340 5.48425 5.52033 5.62883 5.63919 5.67071 5.68599 5.77857 5.78812 6.03815 6.05180 6.14578 6.17667 6.24326 6.27884 6.38993 6.43706 6.46411 6.56758 6.63705 6.69036 6.86568 7.05103 7.36246 7.56649 7.63899 7.72596 7.87821 8.08382 8.35222 9.22278 9.83522 10.50391 11.41372 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.033555 B = 0.001910 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.259183 B =14656.790259 C =15014.276006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.025 4.025 3 C -0.174 4.174 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.114 3.886 7 C -0.118 4.118 8 C -0.101 4.101 9 C 0.512 3.488 10 O -0.530 6.530 11 N -0.726 5.726 12 C 0.148 3.852 13 H 0.085 0.915 14 C -0.123 4.123 15 C -0.099 4.099 16 C -0.115 4.115 17 H 0.069 0.931 18 C 0.163 3.837 19 N -0.608 5.608 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.145 3.855 29 C -0.104 4.104 30 H 0.070 0.930 31 C -0.105 4.105 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.399 0.601 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.013 0.987 47 H 0.251 0.749 48 H 0.022 0.978 49 H 0.024 0.976 50 H 0.064 0.936 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 15.116 20.289 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 C -0.194 4.194 4 C -0.058 4.058 5 N -0.198 5.198 6 C -0.043 4.043 7 C -0.121 4.121 8 C -0.141 4.141 9 C 0.298 3.702 10 O -0.406 6.406 11 N -0.377 5.377 12 C 0.045 3.955 13 H 0.103 0.897 14 C -0.161 4.161 15 C -0.138 4.138 16 C -0.135 4.135 17 H 0.087 0.913 18 C 0.038 3.962 19 N -0.335 5.335 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.209 4.209 23 N -0.571 5.571 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.019 3.981 29 C -0.123 4.123 30 H 0.088 0.912 31 C -0.143 4.143 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.233 0.767 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.122 0.878 46 H 0.031 0.969 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.042 0.958 50 H 0.083 0.917 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.113 15.575 19.449 26.891 hybrid contribution -1.316 -1.044 -0.187 1.690 sum 8.797 14.531 19.262 25.682 Atomic orbital electron populations 1.20860 0.90365 1.03820 1.02551 1.20143 0.96666 0.92471 0.94004 1.22004 0.95642 0.98525 1.03250 1.22725 0.91788 0.96249 0.95033 1.67681 1.41095 0.98455 1.12554 1.22595 0.90831 0.96357 0.94479 1.20151 0.94940 0.94189 1.02789 1.20624 1.02312 0.95672 0.95536 1.20440 0.77710 0.81258 0.90834 1.90751 1.53112 1.50905 1.45833 1.46196 1.58813 1.22707 1.10000 1.21110 0.97614 0.94696 0.82112 0.89731 1.21883 0.96203 0.99909 0.98146 1.21253 1.00935 0.96136 0.95436 1.22380 0.95562 0.93654 1.01891 0.91274 1.21648 1.01997 0.82542 0.89983 1.45142 1.35409 1.04390 1.48548 1.19134 1.11641 0.86307 1.17651 0.90515 1.24779 0.99072 0.97038 1.00033 1.69829 1.27007 1.21446 1.38851 0.86014 0.78482 0.81900 0.79212 1.20582 1.21815 1.21817 1.20952 0.91513 0.92760 0.92848 1.21701 0.98026 0.97815 0.94776 0.91155 1.21526 1.01549 0.93141 0.98131 0.90431 0.90773 0.91031 0.84848 0.82854 0.83024 0.87703 0.87609 0.76718 0.92251 0.92214 0.91648 0.91910 0.87839 0.96921 0.93867 0.96022 0.95818 0.91704 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.31 36.00 0.34 -0.50 16 2 C -0.02 -0.22 5.92 -104.32 -0.62 -0.84 16 3 C -0.17 -1.47 9.82 -39.44 -0.39 -1.86 16 4 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 5 N -0.49 -5.50 10.36 -13.25 -0.14 -5.64 16 6 C 0.11 1.16 10.84 -17.55 -0.19 0.97 16 7 C -0.12 -1.10 4.39 -104.48 -0.46 -1.56 16 8 C -0.10 -0.70 5.18 -29.03 -0.15 -0.85 16 9 C 0.51 5.36 7.08 -10.98 -0.08 5.28 16 10 O -0.53 -8.00 15.67 5.56 0.09 -7.91 16 11 N -0.73 -6.76 5.03 -53.62 -0.27 -7.03 16 12 C 0.15 1.81 2.45 -67.74 -0.17 1.64 16 13 H 0.08 1.22 7.52 -51.93 -0.39 0.83 16 14 C -0.12 -1.59 5.38 -26.55 -0.14 -1.73 16 15 C -0.10 -1.52 5.71 -27.01 -0.15 -1.68 16 16 C -0.12 -2.10 2.47 -89.90 -0.22 -2.32 16 17 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 18 C 0.16 3.91 5.53 -2.81 -0.02 3.89 16 19 N -0.61 -15.59 3.45 -170.41 -0.59 -16.18 16 20 C -0.22 -6.13 10.30 -15.06 -0.16 -6.28 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 23 N -0.92 -26.99 10.11 55.49 0.56 -26.43 16 24 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 28 C 0.14 2.97 6.98 -3.42 -0.02 2.95 16 29 C -0.10 -1.74 2.30 -90.36 -0.21 -1.95 16 30 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 31 C -0.11 -1.32 5.17 -27.08 -0.14 -1.46 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.49 8.10 -51.93 -0.42 0.06 16 34 H 0.07 0.56 6.35 -51.93 -0.33 0.23 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.10 0.50 7.11 -51.93 -0.37 0.14 16 39 H 0.11 0.48 8.06 -51.93 -0.42 0.06 16 40 H 0.40 2.52 8.61 -40.82 -0.35 2.17 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.00 7.99 -51.93 -0.41 0.58 16 45 H 0.10 2.81 5.93 -51.93 -0.31 2.50 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -34.48 400.09 -10.85 -45.34 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.45 Total: 0.76 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.07 Total: -6.08 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.43 Total: -55.28 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.48 -10.85 -45.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979982375.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.833 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds