Wall clock time and date at job start Wed Apr 1 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38675 * 120.78662 * 2 1 4 4 C 1.38191 * 119.15770 * 180.31771 * 3 2 1 5 5 N 1.31885 * 120.76433 * 359.66251 * 4 3 2 6 6 C 1.31855 * 121.72832 * 0.02562 * 5 4 3 7 7 C 1.38227 * 120.76193 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.41931 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.46796 * 264.99990 * 8 7 6 10 10 O 1.21270 * 119.99907 * 359.97438 * 9 8 7 11 11 N 1.34782 * 119.99586 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99681 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.26680 * 34.50722 * 12 11 9 14 14 C 1.51202 * 109.26924 * 274.99944 * 12 11 9 15 15 C 1.49307 * 116.94576 * 272.63132 * 14 12 11 16 16 C 1.49195 * 121.14020 * 359.73419 * 15 14 12 17 17 H 1.09004 * 108.41754 * 122.31777 * 16 15 14 18 18 C 1.54192 * 111.21869 * 240.34280 * 16 15 14 19 19 N 1.46883 * 106.35537 * 154.09867 * 18 16 15 20 20 C 1.36940 * 125.36346 * 162.42126 * 19 18 16 21 21 H 1.08002 * 119.99515 * 179.69295 * 20 19 18 22 22 C 1.38806 * 120.00496 * 359.69663 * 20 19 18 23 23 N 1.31624 * 119.99614 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00280 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47136 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47277 * 119.99768 * 24 22 20 27 27 H 1.48504 * 109.46700 * 239.99474 * 24 22 20 28 28 C 1.46796 * 109.26747 * 342.15529 * 19 18 16 29 29 C 1.52595 * 116.85318 * 359.63570 * 16 15 14 30 30 H 1.08998 * 110.47160 * 91.64206 * 29 16 15 31 31 C 1.52798 * 110.38428 * 328.35482 * 29 16 15 32 32 H 1.09001 * 109.46997 * 270.28601 * 1 2 3 33 33 H 1.09000 * 109.47560 * 30.28549 * 1 2 3 34 34 H 1.08999 * 109.47382 * 150.28514 * 1 2 3 35 35 H 1.07995 * 120.42227 * 0.02562 * 3 2 1 36 36 H 1.07997 * 119.61332 * 179.68654 * 4 3 2 37 37 H 1.07995 * 119.61963 * 179.97438 * 6 5 4 38 38 H 1.08990 * 109.47287 * 144.99657 * 8 7 6 39 39 H 1.09004 * 109.47100 * 24.99554 * 8 7 6 40 40 H 0.97000 * 120.00014 * 0.02562 * 11 9 8 41 41 H 1.08996 * 107.95342 * 150.74239 * 14 12 11 42 42 H 1.09001 * 107.92192 * 34.48889 * 14 12 11 43 43 H 1.08995 * 107.08034 * 236.73644 * 15 14 12 44 44 H 1.09000 * 107.07991 * 122.73317 * 15 14 12 45 45 H 1.08997 * 110.07417 * 34.87086 * 18 16 15 46 46 H 1.09001 * 110.07285 * 273.32314 * 18 16 15 47 47 H 0.97002 * 119.99788 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.83067 * 120.55245 * 28 19 18 49 49 H 1.08997 * 109.82969 * 241.53186 * 28 19 18 50 50 H 1.09003 * 109.83975 * 183.67583 * 31 29 16 51 51 H 1.08991 * 109.84426 * 304.65173 * 31 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0067 5 7 4.2403 0.0001 -0.0063 6 6 3.5983 -1.1516 -0.0002 7 6 2.2166 -1.1908 0.0057 8 6 1.4908 -2.5115 0.0121 9 6 1.1344 -2.8958 -1.4009 10 8 1.4394 -2.1686 -2.3222 11 7 0.4768 -4.0476 -1.6405 12 6 0.1309 -4.4214 -3.0141 13 1 0.9169 -4.0810 -3.6882 14 6 -1.1749 -3.7621 -3.3969 15 6 -2.4291 -4.4976 -3.0575 16 6 -2.3853 -5.8247 -2.3772 17 1 -2.9505 -5.7542 -1.4479 18 6 -3.0468 -6.9169 -3.2415 19 7 -2.4306 -8.1893 -2.8431 20 6 -2.9433 -9.4329 -3.0997 21 1 -2.4132 -10.3141 -2.7697 22 6 -4.1443 -9.5609 -3.7838 23 7 -4.7905 -8.4869 -4.1855 24 14 -4.8441 -11.2573 -4.1331 25 1 -3.9333 -12.2919 -3.5805 26 1 -6.1799 -11.3824 -3.4967 27 1 -4.9751 -11.4462 -5.6002 28 6 -1.1752 -7.9179 -2.1323 29 6 -1.0045 -6.3899 -2.0572 30 1 -0.6922 -6.0898 -1.0569 31 6 0.0105 -5.9423 -3.1080 32 1 -0.3633 0.0051 1.0277 33 1 -0.3634 0.8874 -0.5182 34 1 -0.3634 -0.8925 -0.5094 35 1 1.6967 2.1378 0.0004 36 1 4.1582 2.0754 -0.0119 37 1 4.1585 -2.0749 -0.0005 38 1 0.5806 -2.4230 0.6051 39 1 2.1339 -3.2775 0.4457 40 1 0.2326 -4.6290 -0.9035 41 1 -1.1640 -3.5954 -4.4739 42 1 -1.2143 -2.7879 -2.9094 43 1 -2.9826 -4.6323 -3.9867 44 1 -3.0284 -3.8366 -2.4314 45 1 -2.8579 -6.7240 -4.2975 46 1 -4.1198 -6.9452 -3.0518 47 1 -5.6300 -8.5764 -4.6632 48 1 -1.2224 -8.3347 -1.1261 49 1 -0.3395 -8.3571 -2.6769 50 1 0.9779 -6.4031 -2.9078 51 1 -0.3364 -6.2254 -4.1017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979982378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:30 Heat of formation + Delta-G solvation = -5.958387 kcal Electronic energy + Delta-G solvation = -30354.309392 eV Core-core repulsion = 26445.660288 eV Total energy + Delta-G solvation = -3908.649103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.73265 -41.09673 -39.82663 -37.15698 -35.29193 -34.79479 -33.83652 -33.38003 -32.02253 -30.98935 -29.35681 -28.37311 -27.72064 -26.87895 -24.13036 -23.69668 -23.03961 -22.27885 -22.05258 -21.30498 -18.95040 -18.82344 -18.13712 -17.72304 -17.34424 -17.18835 -16.88773 -16.55367 -16.08403 -15.75544 -15.55409 -15.38327 -15.09805 -14.84864 -14.44688 -14.30023 -14.12842 -13.87526 -13.75796 -13.71363 -13.59324 -13.50601 -13.37755 -12.97313 -12.91738 -12.78776 -12.68702 -12.64351 -12.35274 -12.20399 -12.01313 -11.84395 -11.66595 -11.22275 -10.97625 -10.90438 -10.77892 -10.65237 -10.37455 -10.29061 -9.96293 -9.85357 -8.84159 -7.79257 -5.19312 0.19466 0.36734 1.45893 1.46390 1.56774 1.73020 2.28199 2.50037 2.92455 3.33279 3.54015 3.66148 3.68969 3.73658 3.78832 3.82045 3.85174 3.97900 4.07460 4.09530 4.13141 4.19465 4.36299 4.45057 4.51415 4.54321 4.55751 4.64325 4.68115 4.73683 4.75540 4.77688 4.92799 4.93858 5.00901 5.09060 5.09414 5.14571 5.18746 5.21972 5.23080 5.40894 5.44891 5.45723 5.53778 5.60116 5.65725 5.74851 5.84730 5.89176 6.29943 6.66501 7.07760 7.14010 7.35622 7.83636 8.45120 9.25465 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.032010 B = 0.002107 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.521473 B =13283.667661 C =13619.694988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 C -0.179 4.179 4 C 0.084 3.916 5 N -0.520 5.520 6 C 0.095 3.905 7 C -0.126 4.126 8 C -0.095 4.095 9 C 0.516 3.484 10 O -0.579 6.579 11 N -0.710 5.710 12 C 0.163 3.837 13 H 0.077 0.923 14 C -0.109 4.109 15 C -0.090 4.090 16 C -0.088 4.088 17 H 0.060 0.940 18 C 0.179 3.821 19 N -0.627 5.627 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.071 4.071 23 N -0.950 5.950 24 Si 0.977 3.023 25 H -0.265 1.265 26 H -0.292 1.292 27 H -0.295 1.295 28 C 0.132 3.868 29 C -0.073 4.073 30 H 0.106 0.894 31 C -0.105 4.105 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.412 0.588 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.062 0.938 45 H -0.020 1.020 46 H 0.047 0.953 47 H 0.245 0.755 48 H 0.028 0.972 49 H 0.025 0.975 50 H 0.086 0.914 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.946 17.669 12.609 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.198 4.198 4 C -0.072 4.072 5 N -0.229 5.229 6 C -0.061 4.061 7 C -0.128 4.128 8 C -0.135 4.135 9 C 0.303 3.697 10 O -0.459 6.459 11 N -0.364 5.364 12 C 0.058 3.942 13 H 0.095 0.905 14 C -0.147 4.147 15 C -0.128 4.128 16 C -0.107 4.107 17 H 0.079 0.921 18 C 0.054 3.946 19 N -0.353 5.353 20 C -0.365 4.365 21 H 0.099 0.901 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.806 3.194 25 H -0.189 1.189 26 H -0.219 1.219 27 H -0.222 1.222 28 C 0.007 3.993 29 C -0.091 4.091 30 H 0.124 0.876 31 C -0.142 4.142 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.174 0.826 36 H 0.191 0.809 37 H 0.181 0.819 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.251 0.749 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.081 0.919 45 H -0.002 1.002 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.043 0.957 50 H 0.104 0.896 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.900 18.083 11.865 25.710 hybrid contribution -1.844 -1.283 -0.620 2.331 sum 12.056 16.800 11.245 23.538 Atomic orbital electron populations 1.20885 0.89096 1.03550 1.03801 1.20522 0.97780 0.92735 0.93682 1.22303 0.95520 0.99496 1.02506 1.23144 0.92585 0.96548 0.94963 1.67661 1.42182 0.99350 1.13748 1.22899 0.91622 0.96640 0.94952 1.20372 0.94803 0.95273 1.02400 1.20687 1.03819 0.95394 0.93635 1.20921 0.76569 0.80563 0.91632 1.90719 1.55262 1.52423 1.47477 1.46205 1.58060 1.22724 1.09455 1.20311 0.95839 0.94217 0.83818 0.90505 1.20686 0.93639 0.98989 1.01406 1.19718 0.97907 0.94858 1.00333 1.20896 0.96703 0.94237 0.98887 0.92139 1.21419 0.96980 0.83280 0.92918 1.44629 1.22654 1.02324 1.65701 1.19494 1.02900 0.84630 1.29455 0.90082 1.25636 0.98493 1.00877 1.01293 1.70164 1.17341 1.27785 1.44738 0.85021 0.77963 0.79538 0.76906 1.18950 1.21897 1.22246 1.21533 0.87883 0.95010 0.94888 1.21450 0.94469 0.93469 0.99744 0.87611 1.21668 0.99446 0.93680 0.99454 0.88403 0.90447 0.91824 0.82612 0.80883 0.81884 0.85237 0.84796 0.74891 0.92386 0.91824 0.94317 0.91942 1.00195 0.93524 0.94575 0.95365 0.95680 0.89551 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.31 71.24 0.66 -0.82 16 2 C -0.04 -0.66 5.92 -19.67 -0.12 -0.78 16 3 C -0.18 -2.82 9.82 22.36 0.22 -2.60 16 4 C 0.08 1.49 11.18 84.67 0.95 2.44 16 5 N -0.52 -11.59 10.36 -195.84 -2.03 -13.62 16 6 C 0.10 1.89 10.84 84.69 0.92 2.81 16 7 C -0.13 -2.21 4.39 -19.77 -0.09 -2.30 16 8 C -0.10 -1.17 5.18 29.10 0.15 -1.02 16 9 C 0.52 10.03 6.87 87.66 0.60 10.64 16 10 O -0.58 -16.70 15.68 -3.00 -0.05 -16.74 16 11 N -0.71 -12.50 4.90 -445.56 -2.18 -14.68 16 12 C 0.16 3.77 2.77 44.36 0.12 3.89 16 13 H 0.08 1.98 7.55 -2.39 -0.02 1.96 16 14 C -0.11 -2.75 5.46 28.83 0.16 -2.59 16 15 C -0.09 -2.63 5.40 28.20 0.15 -2.47 16 16 C -0.09 -2.95 2.85 -11.74 -0.03 -2.98 16 17 H 0.06 2.01 8.13 -2.38 -0.02 1.99 16 18 C 0.18 8.62 4.90 86.71 0.43 9.04 16 19 N -0.63 -31.43 3.39 -696.13 -2.36 -33.79 16 20 C -0.24 -13.07 10.25 84.03 0.86 -12.21 16 21 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 22 C -0.07 -4.01 5.48 84.86 0.47 -3.54 16 23 N -0.95 -57.02 10.18 21.65 0.22 -56.80 16 24 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 28 C 0.13 4.96 6.85 86.64 0.59 5.56 16 29 C -0.07 -2.03 2.72 -10.68 -0.03 -2.06 16 30 H 0.11 2.12 6.16 -2.39 -0.01 2.11 16 31 C -0.10 -2.67 4.71 30.48 0.14 -2.53 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 34 H 0.06 0.93 6.35 -2.39 -0.02 0.91 16 35 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.13 0.99 7.11 -2.39 -0.02 0.97 16 39 H 0.13 0.91 8.06 -2.38 -0.02 0.89 16 40 H 0.41 5.27 6.44 -92.71 -0.60 4.67 16 41 H 0.06 1.53 8.12 -2.39 -0.02 1.52 16 42 H 0.06 1.56 7.76 -2.39 -0.02 1.54 16 43 H 0.04 1.31 7.20 -2.39 -0.02 1.29 16 44 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 45 H -0.02 -1.07 7.69 -2.39 -0.02 -1.09 16 46 H 0.05 2.61 6.25 -2.39 -0.01 2.60 16 47 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 48 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 49 H 0.03 0.94 7.71 -2.39 -0.02 0.92 16 50 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.33 393.89 2.12 -74.20 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.33 Total: 15.24 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 6.16 Total: -1.55 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -6.35 Total: -118.89 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.05 Total: -16.74 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.33 2.12 -74.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979982378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.245 kcal (2) G-P(sol) polarization free energy of solvation -76.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds