Wall clock time and date at job start Wed Apr 1 2020 02:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38226 * 120.42381 * 2 1 4 4 N 1.31849 * 120.76657 * 180.02562 * 3 2 1 5 5 C 1.31883 * 121.72475 * 359.70132 * 4 3 2 6 6 C 1.38181 * 120.76546 * 0.58710 * 5 4 3 7 7 C 1.50703 * 120.42030 * 179.70408 * 6 5 4 8 8 C 1.50706 * 109.46796 * 269.72524 * 7 6 5 9 9 O 1.21270 * 119.99907 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99586 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99681 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.24153 * 34.48905 * 11 10 8 13 13 C 1.51202 * 109.26924 * 274.99944 * 11 10 8 14 14 C 1.49307 * 116.94576 * 272.63132 * 13 11 10 15 15 C 1.49195 * 121.14020 * 359.73419 * 14 13 11 16 16 H 1.09004 * 108.41754 * 122.31777 * 15 14 13 17 17 C 1.54192 * 111.21869 * 240.34280 * 15 14 13 18 18 N 1.46883 * 106.35537 * 154.09867 * 17 15 14 19 19 C 1.36940 * 125.36346 * 162.42126 * 18 17 15 20 20 H 1.08002 * 119.99515 * 179.69295 * 19 18 17 21 21 C 1.38806 * 120.00496 * 359.69663 * 19 18 17 22 22 N 1.31624 * 119.99614 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47423 * 89.99600 * 23 21 19 25 25 H 1.48505 * 109.46917 * 209.99715 * 23 21 19 26 26 H 1.48495 * 109.46829 * 329.99500 * 23 21 19 27 27 C 1.46796 * 109.26747 * 342.15529 * 18 17 15 28 28 C 1.52595 * 116.85318 * 359.63570 * 15 14 13 29 29 H 1.08998 * 110.47160 * 91.64206 * 28 15 14 30 30 C 1.52798 * 110.38428 * 328.35482 * 28 15 14 31 31 C 1.38632 * 120.41807 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46782 * 269.97903 * 1 2 3 33 33 H 1.09004 * 109.46749 * 29.98303 * 1 2 3 34 34 H 1.08996 * 109.47178 * 149.97615 * 1 2 3 35 35 H 1.08007 * 119.61161 * 359.97438 * 3 2 1 36 36 H 1.08006 * 119.61891 * 180.31182 * 5 4 3 37 37 H 1.08990 * 109.47287 * 149.72191 * 7 6 5 38 38 H 1.09004 * 109.47100 * 29.72088 * 7 6 5 39 39 H 0.97000 * 120.00014 * 0.02562 * 10 8 7 40 40 H 1.08996 * 107.95342 * 150.74239 * 13 11 10 41 41 H 1.09001 * 107.92192 * 34.48889 * 13 11 10 42 42 H 1.08995 * 107.08034 * 236.73644 * 14 13 11 43 43 H 1.09000 * 107.07991 * 122.73317 * 14 13 11 44 44 H 1.08997 * 110.07417 * 34.87086 * 17 15 14 45 45 H 1.09001 * 110.07285 * 273.32314 * 17 15 14 46 46 H 0.97002 * 119.99788 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.83067 * 120.55245 * 27 18 17 48 48 H 1.08997 * 109.82969 * 241.53186 * 27 18 17 49 49 H 1.09003 * 109.83975 * 183.67583 * 30 28 15 50 50 H 1.08991 * 109.84426 * 304.65173 * 30 28 15 51 51 H 1.08002 * 120.78873 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 7 3.5255 1.1998 -0.0005 5 6 4.2257 0.0822 0.0048 6 6 3.5948 -1.1472 -0.0010 7 6 4.4026 -2.4194 -0.0016 8 6 4.6714 -2.8430 -1.4226 9 8 4.2483 -2.1778 -2.3440 10 7 5.3821 -3.9614 -1.6694 11 6 5.6439 -4.3729 -3.0508 12 1 5.7709 -3.4863 -3.6718 13 6 4.4701 -5.1767 -3.5629 14 6 4.4887 -6.6458 -3.2973 15 6 5.6213 -7.2831 -2.5645 16 1 5.2212 -7.7915 -1.6872 17 6 6.3235 -8.3437 -3.4360 18 7 7.7027 -8.4395 -2.9400 19 6 8.5642 -9.4746 -3.1883 20 1 9.5649 -9.4534 -2.7826 21 6 8.1514 -10.5510 -3.9615 22 7 6.9317 -10.5770 -4.4555 23 14 9.3264 -11.9632 -4.2996 24 1 9.1840 -12.9909 -3.2372 25 1 9.0079 -12.5672 -5.6184 26 1 10.7214 -11.4543 -4.3122 27 6 8.0141 -7.2478 -2.1414 28 6 6.7533 -6.3651 -2.1124 29 1 6.5671 -5.9992 -1.1027 30 6 6.9240 -5.2072 -3.0947 31 6 2.2089 -1.1955 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6675 2.1276 -0.0004 36 1 5.3047 0.1284 0.0093 37 1 3.8463 -3.2032 0.5123 38 1 5.3489 -2.2491 0.5120 39 1 5.7202 -4.4937 -0.9324 40 1 4.4080 -5.0309 -4.6413 41 1 3.5632 -4.7664 -3.1186 42 1 4.4095 -7.1466 -4.2622 43 1 3.5778 -6.8834 -2.7478 44 1 6.3221 -8.0307 -4.4800 45 1 5.8209 -9.3054 -3.3325 46 1 6.6431 -11.3293 -4.9955 47 1 8.2827 -7.5423 -1.1268 48 1 8.8381 -6.7007 -2.5994 49 1 7.7755 -4.5941 -2.7994 50 1 7.0782 -5.5956 -4.1013 51 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980139168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:28 Heat of formation + Delta-G solvation = 12.769918 kcal Electronic energy + Delta-G solvation = -29948.832122 eV Core-core repulsion = 26040.995138 eV Total energy + Delta-G solvation = -3907.836983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.81260 -40.12575 -38.70426 -35.73030 -33.89342 -33.80135 -33.35797 -32.17423 -30.78497 -29.39334 -28.17700 -27.56515 -26.35439 -25.02796 -23.56567 -22.62927 -22.06833 -21.02135 -20.64919 -20.04449 -17.71363 -17.35571 -17.13595 -16.96276 -16.84504 -15.91469 -15.68831 -15.17532 -14.67776 -14.60790 -14.52666 -14.00650 -13.97374 -13.62811 -13.48272 -13.30151 -13.24730 -12.93787 -12.82532 -12.72102 -12.58362 -12.24498 -12.17888 -11.90970 -11.71688 -11.50945 -11.29787 -10.97513 -10.96281 -10.73663 -10.46944 -10.11270 -10.03653 -9.98972 -9.80510 -9.73869 -9.67535 -9.41892 -9.32758 -9.03560 -8.97632 -8.61649 -6.82647 -5.69031 -3.07222 0.83615 1.04870 2.56446 3.11546 3.38359 3.43566 3.45480 3.61609 4.12662 4.37163 4.44287 4.48123 4.68685 4.70310 4.73360 4.81984 4.94350 4.96361 5.02485 5.03828 5.16212 5.22324 5.32505 5.37944 5.39462 5.46623 5.50201 5.51464 5.66905 5.69549 5.79539 5.85792 5.92455 5.93420 5.98717 6.01559 6.20260 6.29352 6.36830 6.41720 6.46142 6.54250 6.63376 6.69203 6.77079 6.88759 6.95798 7.48174 7.54798 7.64769 7.74502 7.85069 8.17880 8.32529 9.22316 9.83130 10.47350 11.37506 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.001987 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.029518 B =14091.431928 C =14473.256207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.094 3.906 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.108 4.108 7 C -0.102 4.102 8 C 0.512 3.488 9 O -0.538 6.538 10 N -0.720 5.720 11 C 0.152 3.848 12 H 0.084 0.916 13 C -0.115 4.115 14 C -0.099 4.099 15 C -0.104 4.104 16 H 0.056 0.944 17 C 0.172 3.828 18 N -0.604 5.604 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.140 3.860 28 C -0.086 4.086 29 H 0.062 0.938 30 C -0.113 4.113 31 C -0.063 4.063 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.400 0.600 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.015 0.985 45 H 0.087 0.913 46 H 0.252 0.748 47 H 0.019 0.981 48 H 0.023 0.977 49 H 0.066 0.934 50 H 0.086 0.914 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 19.026 10.889 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.064 4.064 4 N -0.188 5.188 5 C -0.051 4.051 6 C -0.111 4.111 7 C -0.142 4.142 8 C 0.298 3.702 9 O -0.414 6.414 10 N -0.374 5.374 11 C 0.048 3.952 12 H 0.102 0.898 13 C -0.154 4.154 14 C -0.137 4.137 15 C -0.124 4.124 16 H 0.074 0.926 17 C 0.047 3.953 18 N -0.330 5.330 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.014 3.986 28 C -0.105 4.105 29 H 0.080 0.920 30 C -0.151 4.151 31 C -0.089 4.089 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.237 0.763 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.041 0.959 49 H 0.084 0.916 50 H 0.104 0.896 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.410 20.094 10.078 24.773 hybrid contribution 0.295 -1.989 0.089 2.013 sum -10.115 18.105 10.167 23.097 Atomic orbital electron populations 1.20719 0.90193 1.03272 1.02505 1.20900 0.97584 0.94076 1.01358 1.22640 0.89995 0.97414 0.96314 1.67662 1.08368 1.31079 1.11723 1.22563 1.00144 0.87102 0.95327 1.20279 0.94258 0.95436 1.01079 1.20633 1.01906 0.96085 0.95587 1.20415 0.78250 0.80674 0.90857 1.90725 1.50699 1.53814 1.46189 1.46364 1.55301 1.26074 1.09628 1.20598 0.95200 0.97344 0.82019 0.89780 1.20766 0.98071 0.95297 1.01271 1.19822 0.97955 0.94483 1.01467 1.21071 0.94352 0.97213 0.99755 0.92563 1.21684 0.84319 0.96458 0.92859 1.44288 1.11406 1.18502 1.58794 1.19061 0.93968 0.95844 1.26393 0.90538 1.24797 0.96975 0.98764 1.00133 1.69894 1.16567 1.31390 1.39199 0.86095 0.79879 0.82307 0.77355 1.21636 1.21684 1.20744 1.21269 0.94174 0.88411 0.94719 1.21456 0.96751 0.95201 0.97134 0.91971 1.21776 0.95335 0.96092 1.01849 1.21333 0.93291 0.98305 0.96002 0.90921 0.91138 0.91253 0.83002 0.83058 0.87678 0.87506 0.76322 0.91858 0.92476 0.91991 0.93665 0.96661 0.89465 0.93788 0.96271 0.95933 0.91569 0.89576 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.04 36.01 0.36 -0.28 16 2 C -0.14 -1.21 5.90 -104.48 -0.62 -1.82 16 3 C 0.09 0.90 10.86 -17.55 -0.19 0.71 16 4 N -0.48 -5.59 10.36 -13.25 -0.14 -5.72 16 5 C 0.11 1.12 10.86 -17.55 -0.19 0.93 16 6 C -0.11 -1.05 4.39 -104.48 -0.46 -1.51 16 7 C -0.10 -0.79 5.86 -29.03 -0.17 -0.96 16 8 C 0.51 5.80 7.57 -10.98 -0.08 5.72 16 9 O -0.54 -8.33 15.68 5.57 0.09 -8.25 16 10 N -0.72 -7.71 4.90 -54.77 -0.27 -7.98 16 11 C 0.15 1.95 2.77 -68.91 -0.19 1.76 16 12 H 0.08 1.16 7.55 -51.93 -0.39 0.77 16 13 C -0.12 -1.57 5.46 -29.46 -0.16 -1.73 16 14 C -0.10 -1.51 5.40 -30.42 -0.16 -1.67 16 15 C -0.10 -1.82 2.85 -92.08 -0.26 -2.08 16 16 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 17 C 0.17 4.00 4.90 -3.21 -0.02 3.99 16 18 N -0.60 -14.99 3.39 -171.38 -0.58 -15.57 16 19 C -0.22 -6.16 10.25 -15.06 -0.15 -6.31 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.31 5.48 -17.43 -0.10 -0.40 16 22 N -0.92 -26.64 10.18 55.49 0.56 -26.07 16 23 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.14 2.76 6.85 -3.39 -0.02 2.73 16 28 C -0.09 -1.33 2.72 -90.44 -0.25 -1.57 16 29 H 0.06 0.79 6.16 -51.93 -0.32 0.47 16 30 C -0.11 -1.56 4.71 -26.91 -0.13 -1.69 16 31 C -0.06 -0.59 9.55 -39.28 -0.37 -0.97 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 35 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.11 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.40 3.57 6.44 -40.82 -0.26 3.31 16 40 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 41 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 42 H 0.06 1.03 7.20 -51.93 -0.37 0.66 16 43 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 44 H 0.02 0.39 7.69 -51.93 -0.40 -0.01 16 45 H 0.09 2.33 6.25 -51.93 -0.32 2.01 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.44 7.71 -51.93 -0.40 0.04 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 51 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -33.54 398.15 -10.85 -44.39 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.33 Total: 1.48 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -3.16 Total: -5.15 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.42 Total: -55.34 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.25 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.54 -10.85 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980139168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.156 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds