Wall clock time and date at job start Wed Apr 1 2020 02:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38226 * 120.42381 * 2 1 4 4 N 1.31849 * 120.76657 * 180.02562 * 3 2 1 5 5 C 1.31883 * 121.72475 * 359.70132 * 4 3 2 6 6 C 1.38181 * 120.76546 * 0.58710 * 5 4 3 7 7 C 1.50703 * 120.42030 * 179.70408 * 6 5 4 8 8 C 1.50706 * 109.46796 * 269.72524 * 7 6 5 9 9 O 1.21270 * 119.99907 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99586 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99681 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.24153 * 34.48905 * 11 10 8 13 13 C 1.51202 * 109.26924 * 274.99944 * 11 10 8 14 14 C 1.49307 * 116.94576 * 272.63132 * 13 11 10 15 15 C 1.49195 * 121.14020 * 359.73419 * 14 13 11 16 16 H 1.09004 * 108.41754 * 122.31777 * 15 14 13 17 17 C 1.54192 * 111.21869 * 240.34280 * 15 14 13 18 18 N 1.46883 * 106.35537 * 154.09867 * 17 15 14 19 19 C 1.36940 * 125.36346 * 162.42126 * 18 17 15 20 20 H 1.08002 * 119.99515 * 179.69295 * 19 18 17 21 21 C 1.38806 * 120.00496 * 359.69663 * 19 18 17 22 22 N 1.31624 * 119.99614 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47423 * 89.99600 * 23 21 19 25 25 H 1.48505 * 109.46917 * 209.99715 * 23 21 19 26 26 H 1.48495 * 109.46829 * 329.99500 * 23 21 19 27 27 C 1.46796 * 109.26747 * 342.15529 * 18 17 15 28 28 C 1.52595 * 116.85318 * 359.63570 * 15 14 13 29 29 H 1.08998 * 110.47160 * 91.64206 * 28 15 14 30 30 C 1.52798 * 110.38428 * 328.35482 * 28 15 14 31 31 C 1.38632 * 120.41807 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.46782 * 269.97903 * 1 2 3 33 33 H 1.09004 * 109.46749 * 29.98303 * 1 2 3 34 34 H 1.08996 * 109.47178 * 149.97615 * 1 2 3 35 35 H 1.08007 * 119.61161 * 359.97438 * 3 2 1 36 36 H 1.08006 * 119.61891 * 180.31182 * 5 4 3 37 37 H 1.08990 * 109.47287 * 149.72191 * 7 6 5 38 38 H 1.09004 * 109.47100 * 29.72088 * 7 6 5 39 39 H 0.97000 * 120.00014 * 0.02562 * 10 8 7 40 40 H 1.08996 * 107.95342 * 150.74239 * 13 11 10 41 41 H 1.09001 * 107.92192 * 34.48889 * 13 11 10 42 42 H 1.08995 * 107.08034 * 236.73644 * 14 13 11 43 43 H 1.09000 * 107.07991 * 122.73317 * 14 13 11 44 44 H 1.08997 * 110.07417 * 34.87086 * 17 15 14 45 45 H 1.09001 * 110.07285 * 273.32314 * 17 15 14 46 46 H 0.97002 * 119.99788 * 180.02562 * 22 21 19 47 47 H 1.09004 * 109.83067 * 120.55245 * 27 18 17 48 48 H 1.08997 * 109.82969 * 241.53186 * 27 18 17 49 49 H 1.09003 * 109.83975 * 183.67583 * 30 28 15 50 50 H 1.08991 * 109.84426 * 304.65173 * 30 28 15 51 51 H 1.08002 * 120.78873 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 7 3.5255 1.1998 -0.0005 5 6 4.2257 0.0822 0.0048 6 6 3.5948 -1.1472 -0.0010 7 6 4.4026 -2.4194 -0.0016 8 6 4.6714 -2.8430 -1.4226 9 8 4.2483 -2.1778 -2.3440 10 7 5.3821 -3.9614 -1.6694 11 6 5.6439 -4.3729 -3.0508 12 1 5.7709 -3.4863 -3.6718 13 6 4.4701 -5.1767 -3.5629 14 6 4.4887 -6.6458 -3.2973 15 6 5.6213 -7.2831 -2.5645 16 1 5.2212 -7.7915 -1.6872 17 6 6.3235 -8.3437 -3.4360 18 7 7.7027 -8.4395 -2.9400 19 6 8.5642 -9.4746 -3.1883 20 1 9.5649 -9.4534 -2.7826 21 6 8.1514 -10.5510 -3.9615 22 7 6.9317 -10.5770 -4.4555 23 14 9.3264 -11.9632 -4.2996 24 1 9.1840 -12.9909 -3.2372 25 1 9.0079 -12.5672 -5.6184 26 1 10.7214 -11.4543 -4.3122 27 6 8.0141 -7.2478 -2.1414 28 6 6.7533 -6.3651 -2.1124 29 1 6.5671 -5.9992 -1.1027 30 6 6.9240 -5.2072 -3.0947 31 6 2.2089 -1.1955 -0.0005 32 1 -0.3633 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8897 -0.5142 35 1 1.6675 2.1276 -0.0004 36 1 5.3047 0.1284 0.0093 37 1 3.8463 -3.2032 0.5123 38 1 5.3489 -2.2491 0.5120 39 1 5.7202 -4.4937 -0.9324 40 1 4.4080 -5.0309 -4.6413 41 1 3.5632 -4.7664 -3.1186 42 1 4.4095 -7.1466 -4.2622 43 1 3.5778 -6.8834 -2.7478 44 1 6.3221 -8.0307 -4.4800 45 1 5.8209 -9.3054 -3.3325 46 1 6.6431 -11.3293 -4.9955 47 1 8.2827 -7.5423 -1.1268 48 1 8.8381 -6.7007 -2.5994 49 1 7.7755 -4.5941 -2.7994 50 1 7.0782 -5.5956 -4.1013 51 1 1.6887 -2.1420 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980139168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:27 Heat of formation + Delta-G solvation = -7.574373 kcal Electronic energy + Delta-G solvation = -29949.714316 eV Core-core repulsion = 26040.995138 eV Total energy + Delta-G solvation = -3908.719178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.67589 -41.09695 -39.86091 -37.15636 -34.80036 -34.54191 -34.46022 -33.77560 -32.06739 -31.00444 -28.98372 -28.14348 -27.79433 -26.88119 -24.30941 -23.84438 -23.06869 -22.17763 -22.03839 -21.20049 -18.94929 -18.82210 -18.15968 -17.83757 -17.64344 -17.21061 -16.87359 -16.55690 -15.97462 -15.57083 -15.46354 -15.30000 -15.02314 -14.88655 -14.44456 -14.30307 -14.07795 -13.94025 -13.85082 -13.75033 -13.50809 -13.43221 -13.26036 -13.06715 -12.96423 -12.82450 -12.69688 -12.64441 -12.37586 -12.22192 -12.05375 -11.84237 -11.67468 -11.22706 -11.01926 -10.90998 -10.79118 -10.65336 -10.45295 -10.37942 -9.96785 -9.69811 -8.84194 -7.79099 -5.19233 0.16271 0.37028 1.45809 1.47345 1.55987 1.73122 2.27707 2.50205 2.90731 3.33254 3.50925 3.65880 3.68596 3.74562 3.78510 3.82056 3.87864 4.05827 4.09493 4.10946 4.12579 4.18912 4.29371 4.37168 4.44476 4.49064 4.55428 4.67791 4.67936 4.75201 4.81948 4.84613 4.93547 4.94097 5.00497 5.08780 5.14120 5.18312 5.20847 5.22824 5.28820 5.36388 5.40380 5.45244 5.53475 5.59664 5.65330 5.74467 5.83008 5.88906 6.29853 6.66337 7.05189 7.13921 7.35472 7.83655 8.45220 9.25448 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.001987 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.029518 B =14091.431928 C =14473.256207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C 0.077 3.923 4 N -0.511 5.511 5 C 0.084 3.916 6 C -0.115 4.115 7 C -0.093 4.093 8 C 0.514 3.486 9 O -0.583 6.583 10 N -0.710 5.710 11 C 0.163 3.837 12 H 0.077 0.923 13 C -0.109 4.109 14 C -0.090 4.090 15 C -0.088 4.088 16 H 0.060 0.940 17 C 0.179 3.821 18 N -0.627 5.627 19 C -0.237 4.237 20 H 0.081 0.919 21 C -0.070 4.070 22 N -0.950 5.950 23 Si 0.978 3.022 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.132 3.868 28 C -0.073 4.073 29 H 0.106 0.894 30 C -0.104 4.104 31 C -0.078 4.078 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.413 0.587 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.061 0.939 44 H -0.020 1.020 45 H 0.047 0.953 46 H 0.245 0.755 47 H 0.028 0.972 48 H 0.025 0.975 49 H 0.086 0.914 50 H 0.057 0.943 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 20.060 13.142 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C -0.080 4.080 4 N -0.219 5.219 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.133 4.133 8 C 0.302 3.698 9 O -0.462 6.462 10 N -0.364 5.364 11 C 0.058 3.942 12 H 0.095 0.905 13 C -0.148 4.148 14 C -0.128 4.128 15 C -0.108 4.108 16 H 0.078 0.922 17 C 0.054 3.946 18 N -0.353 5.353 19 C -0.366 4.366 20 H 0.099 0.901 21 C -0.263 4.263 22 N -0.600 5.600 23 Si 0.806 3.194 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.195 1.195 27 C 0.007 3.993 28 C -0.091 4.091 29 H 0.124 0.876 30 C -0.142 4.142 31 C -0.103 4.103 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.187 0.813 36 H 0.179 0.821 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.080 0.920 44 H -0.002 1.002 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.043 0.957 49 H 0.105 0.895 50 H 0.076 0.924 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.544 21.141 12.380 26.671 hybrid contribution 0.347 -2.290 -0.623 2.398 sum -10.197 18.851 11.757 24.445 Atomic orbital electron populations 1.20771 0.88217 1.03882 1.03577 1.21235 0.99092 0.93693 1.00188 1.23035 0.89754 0.98753 0.96473 1.67635 1.09457 1.32025 1.12756 1.22850 1.00844 0.87482 0.96032 1.20496 0.94728 0.95883 1.00627 1.20687 1.03499 0.95811 0.93307 1.20985 0.77065 0.79871 0.91857 1.90720 1.52463 1.55115 1.47938 1.46199 1.55139 1.26173 1.08889 1.20313 0.94013 0.96529 0.83375 0.90492 1.20689 0.98808 0.94037 1.01219 1.19717 0.97628 0.95312 1.00156 1.20900 0.95063 0.96268 0.98542 0.92157 1.21417 0.84403 0.96413 0.92355 1.44618 1.11695 1.19641 1.59336 1.19458 0.94639 0.96656 1.25866 0.90088 1.25641 0.98599 1.01400 1.00644 1.70158 1.18193 1.31729 1.39942 0.85082 0.78427 0.79229 0.76642 1.21191 1.22334 1.19473 1.21532 0.96351 0.87318 0.94101 1.21451 0.93477 0.94417 0.99789 0.87592 1.21666 0.96797 0.95808 0.99949 1.21679 0.93555 0.99198 0.95912 0.89502 0.90231 0.90946 0.81257 0.82095 0.84914 0.84648 0.74844 0.92363 0.91924 0.94293 0.92014 1.00182 0.93524 0.94571 0.95361 0.95662 0.89502 0.92388 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.04 71.24 0.72 -0.32 16 2 C -0.14 -2.24 5.90 -19.77 -0.12 -2.36 16 3 C 0.08 1.41 10.86 84.69 0.92 2.33 16 4 N -0.51 -11.60 10.36 -195.84 -2.03 -13.63 16 5 C 0.08 1.69 10.86 84.67 0.92 2.61 16 6 C -0.12 -1.99 4.39 -19.77 -0.09 -2.07 16 7 C -0.09 -1.09 5.86 29.10 0.17 -0.92 16 8 C 0.51 10.07 7.57 87.66 0.66 10.74 16 9 O -0.58 -17.06 15.68 -3.00 -0.05 -17.10 16 10 N -0.71 -12.59 4.90 -445.57 -2.18 -14.78 16 11 C 0.16 3.80 2.77 44.36 0.12 3.93 16 12 H 0.08 2.00 7.55 -2.39 -0.02 1.98 16 13 C -0.11 -2.81 5.46 28.83 0.16 -2.65 16 14 C -0.09 -2.66 5.40 28.20 0.15 -2.51 16 15 C -0.09 -2.99 2.85 -11.74 -0.03 -3.02 16 16 H 0.06 2.02 8.13 -2.38 -0.02 2.00 16 17 C 0.18 8.65 4.90 86.71 0.43 9.08 16 18 N -0.63 -31.51 3.39 -696.13 -2.36 -33.86 16 19 C -0.24 -13.18 10.25 84.03 0.86 -12.32 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -4.01 5.48 84.86 0.47 -3.54 16 22 N -0.95 -57.13 10.18 21.65 0.22 -56.91 16 23 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.13 4.98 6.85 86.64 0.59 5.57 16 28 C -0.07 -2.04 2.72 -10.68 -0.03 -2.07 16 29 H 0.11 2.14 6.16 -2.39 -0.01 2.12 16 30 C -0.10 -2.68 4.71 30.48 0.14 -2.54 16 31 C -0.08 -1.29 9.55 22.47 0.21 -1.07 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16 34 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 35 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.13 0.87 8.09 -2.39 -0.02 0.85 16 38 H 0.14 0.85 8.09 -2.38 -0.02 0.83 16 39 H 0.41 5.28 6.44 -92.71 -0.60 4.68 16 40 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 41 H 0.06 1.58 7.76 -2.39 -0.02 1.56 16 42 H 0.04 1.33 7.20 -2.39 -0.02 1.31 16 43 H 0.06 1.63 8.09 -2.39 -0.02 1.61 16 44 H -0.02 -1.07 7.69 -2.39 -0.02 -1.09 16 45 H 0.05 2.62 6.25 -2.39 -0.01 2.61 16 46 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.03 0.95 7.71 -2.39 -0.02 0.93 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -76.77 398.15 2.22 -74.55 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.33 Total: 15.08 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.26 Total: -1.13 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -6.35 Total: -119.18 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.05 Total: -17.10 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.77 2.22 -74.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980139168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.980 kcal (2) G-P(sol) polarization free energy of solvation -76.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds