Wall clock time and date at job start Wed Apr 1 2020 02:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38626 * 120.32306 * 2 1 4 4 C 1.38593 * 118.48995 * 179.72497 * 3 2 1 5 5 C 1.39310 * 119.05805 * 0.49677 * 4 3 2 6 6 C 1.48166 * 119.72264 * 179.77004 * 5 4 3 7 7 O 1.21508 * 120.00250 * 359.72652 * 6 5 4 8 8 N 1.34781 * 119.99526 * 179.72486 * 6 5 4 9 9 C 1.46504 * 119.99557 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.67747 * 35.50528 * 9 8 6 11 11 C 1.53332 * 109.67698 * 274.99630 * 9 8 6 12 12 C 1.52817 * 108.09145 * 176.10147 * 11 9 8 13 13 C 1.50739 * 111.74276 * 58.92678 * 12 11 9 14 14 H 1.09007 * 108.78053 * 186.59659 * 13 12 11 15 15 C 1.53896 * 113.02240 * 65.12966 * 13 12 11 16 16 N 1.47812 * 104.06429 * 198.52773 * 15 13 12 17 17 C 1.36941 * 125.65013 * 203.37009 * 16 15 13 18 18 H 1.07999 * 120.00290 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00057 * 359.97438 * 17 16 15 20 20 N 1.31624 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47068 * 59.99739 * 21 19 17 23 23 H 1.48499 * 109.47620 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47055 * 300.00295 * 21 19 17 25 25 C 1.47167 * 108.70351 * 23.34787 * 16 15 13 26 26 C 1.53998 * 113.94438 * 308.69072 * 13 12 11 27 27 H 1.09002 * 112.20626 * 280.64306 * 26 13 12 28 28 C 1.53001 * 111.52344 * 47.32558 * 26 13 12 29 29 N 1.32724 * 120.55100 * 359.49579 * 5 4 3 30 30 C 1.31526 * 121.64189 * 0.24955 * 29 5 4 31 31 C 1.50699 * 119.54477 * 180.02562 * 30 29 5 32 32 H 1.08999 * 109.46988 * 270.02253 * 1 2 3 33 33 H 1.09000 * 109.47203 * 30.02114 * 1 2 3 34 34 H 1.09004 * 109.46586 * 150.02074 * 1 2 3 35 35 H 1.08003 * 120.75454 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.47438 * 180.26196 * 4 3 2 37 37 H 0.97001 * 120.00513 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.73421 * 56.45562 * 11 9 8 39 39 H 1.09000 * 109.78104 * 295.77858 * 11 9 8 40 40 H 1.08997 * 109.02958 * 298.34359 * 12 11 9 41 41 H 1.08995 * 108.96963 * 179.46663 * 12 11 9 42 42 H 1.09001 * 110.51215 * 79.88344 * 15 13 12 43 43 H 1.09001 * 110.51087 * 317.17828 * 15 13 12 44 44 H 0.97004 * 120.00080 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.96534 * 241.57825 * 25 16 15 46 46 H 1.09002 * 109.96321 * 120.33232 * 25 16 15 47 47 H 1.09006 * 109.16198 * 67.66314 * 28 26 13 48 48 H 1.09001 * 109.16199 * 186.84632 * 28 26 13 49 49 H 1.09000 * 109.46779 * 90.00589 * 31 30 29 50 50 H 1.08997 * 109.47025 * 210.00233 * 31 30 29 51 51 H 1.09000 * 109.47591 * 330.00589 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 0.0058 5 6 4.2295 -0.0865 0.0009 6 6 5.7097 -0.1510 0.0019 7 8 6.3626 0.8738 0.0020 8 7 6.3320 -1.3465 0.0028 9 6 7.7957 -1.4103 0.0043 10 1 8.1982 -0.5915 0.6007 11 6 8.3185 -1.3075 -1.4335 12 6 9.8455 -1.2792 -1.3823 13 6 10.4050 -2.5120 -0.7194 14 1 11.4819 -2.3897 -0.6027 15 6 10.1249 -3.8011 -1.5119 16 7 10.3220 -4.8812 -0.5222 17 6 10.6291 -6.1837 -0.8127 18 1 10.7537 -6.9002 -0.0143 19 6 10.7802 -6.5831 -2.1335 20 7 10.6289 -5.7098 -3.1066 21 14 11.1984 -8.3600 -2.5300 22 1 10.1299 -9.2487 -2.0064 23 1 11.3037 -8.5273 -4.0018 24 1 12.4934 -8.7169 -1.8968 25 6 10.1342 -4.3248 0.8272 26 6 9.7786 -2.8226 0.6527 27 1 10.1962 -2.2027 1.4461 28 6 8.2515 -2.7424 0.6038 29 7 3.5218 -1.2093 0.0009 30 6 2.2066 -1.1960 0.0005 31 6 1.4503 -2.4994 0.0010 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6846 2.1419 -0.0004 36 1 4.1693 2.0651 0.0103 37 1 5.8109 -2.1647 0.0031 38 1 7.9486 -0.3918 -1.8950 39 1 7.9854 -2.1706 -2.0097 40 1 10.1662 -0.3993 -0.8245 41 1 10.2330 -1.2157 -2.3991 42 1 10.8313 -3.9043 -2.3355 43 1 9.1002 -3.8059 -1.8835 44 1 10.7349 -5.9889 -4.0296 45 1 11.0545 -4.4250 1.4025 46 1 9.3201 -4.8434 1.3336 47 1 7.8702 -3.5545 -0.0154 48 1 7.8552 -2.8474 1.6137 49 1 1.2676 -2.8130 1.0288 50 1 0.4983 -2.3673 -0.5132 51 1 2.0378 -3.2607 -0.5121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980152870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:53 Heat of formation + Delta-G solvation = 9.733330 kcal Electronic energy + Delta-G solvation = -30160.273061 eV Core-core repulsion = 26252.304401 eV Total energy + Delta-G solvation = -3907.968660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.98193 -39.77785 -38.60161 -35.45115 -34.33223 -33.47961 -33.19141 -31.88063 -30.39717 -29.01419 -28.58786 -27.56545 -26.02002 -24.89381 -23.57455 -22.63802 -22.07834 -21.28822 -20.59989 -19.70865 -18.56954 -17.58956 -16.94288 -16.77324 -15.78790 -15.53304 -15.45071 -15.19658 -14.76488 -14.69346 -14.41946 -13.94047 -13.73025 -13.57682 -13.46631 -13.31083 -13.24237 -13.07953 -12.56968 -12.41969 -12.34990 -12.27680 -11.95482 -11.87362 -11.82473 -11.27259 -11.07271 -10.97404 -10.81385 -10.59723 -10.47880 -10.36206 -10.08618 -10.01611 -9.83053 -9.69733 -9.65698 -9.46511 -9.28021 -9.13861 -8.78264 -8.56846 -6.75819 -5.60527 -3.00844 0.39403 0.90845 2.62561 3.10477 3.42853 3.47053 3.48365 3.63313 3.83371 4.29198 4.44193 4.47157 4.53319 4.64199 4.91459 5.02391 5.05637 5.11909 5.19224 5.25759 5.26529 5.32346 5.35530 5.50620 5.51442 5.53253 5.64464 5.69174 5.72327 5.74152 5.84253 5.87174 5.91760 5.94537 5.98872 6.14267 6.31109 6.36911 6.42095 6.51431 6.57001 6.60453 6.67875 6.76346 6.80774 6.94892 7.09141 7.40435 7.61887 7.69107 7.69919 7.93217 8.21881 8.40796 9.27209 9.88463 10.54850 11.43757 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002474 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.872441 B =11314.940229 C =12472.275941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 C -0.082 4.082 4 C -0.115 4.115 5 C 0.081 3.919 6 C 0.570 3.430 7 O -0.537 6.537 8 N -0.701 5.701 9 C 0.146 3.854 10 H 0.085 0.915 11 C -0.124 4.124 12 C -0.095 4.095 13 C -0.113 4.113 14 H 0.063 0.937 15 C 0.165 3.835 16 N -0.606 5.606 17 C -0.221 4.221 18 H 0.075 0.925 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.138 3.862 26 C -0.089 4.089 27 H 0.074 0.926 28 C -0.113 4.113 29 N -0.454 5.454 30 C 0.126 3.874 31 C -0.109 4.109 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.410 0.590 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.015 0.985 44 H 0.251 0.749 45 H 0.019 0.981 46 H 0.022 0.978 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.707 13.655 6.814 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.108 4.108 4 C -0.136 4.136 5 C -0.058 4.058 6 C 0.354 3.646 7 O -0.414 6.414 8 N -0.350 5.350 9 C 0.042 3.958 10 H 0.103 0.897 11 C -0.163 4.163 12 C -0.134 4.134 13 C -0.133 4.133 14 H 0.082 0.918 15 C 0.041 3.959 16 N -0.332 5.332 17 C -0.349 4.349 18 H 0.093 0.907 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.743 3.257 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.012 3.988 26 C -0.108 4.108 27 H 0.092 0.908 28 C -0.151 4.151 29 N -0.166 5.166 30 C -0.015 4.015 31 C -0.166 4.166 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.245 0.755 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.118 0.882 43 H 0.033 0.967 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.040 0.960 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.688 13.422 6.632 23.946 hybrid contribution -0.494 -0.513 -0.187 0.736 sum -19.183 12.909 6.445 24.004 Atomic orbital electron populations 1.20869 0.89902 1.03543 1.02928 1.20949 0.97776 0.93589 0.99828 1.21498 0.93620 0.98379 0.97290 1.22105 0.94868 0.99076 0.97562 1.21203 0.94351 0.89568 1.00643 1.17845 0.85623 0.84177 0.76928 1.90771 1.65823 1.34183 1.50639 1.46011 1.08075 1.08370 1.72546 1.21178 0.77776 0.99292 0.97547 0.89703 1.21919 0.96411 1.02097 0.95855 1.20780 0.94295 0.97377 1.00940 1.21760 0.99213 0.96956 0.95359 0.91836 1.21779 0.99723 0.81890 0.92530 1.44606 1.82455 1.06357 0.99780 1.19026 1.39738 0.84276 0.91902 0.90705 1.24767 1.02419 0.97992 0.95545 1.69820 1.56482 1.32075 0.98690 0.86186 0.78219 0.84257 0.77023 1.21316 1.21637 1.21246 1.21601 0.97078 0.90889 0.89205 1.22043 0.93553 0.97345 0.97888 0.90772 1.21832 0.96570 0.96174 1.00556 1.67400 1.08109 1.30445 1.10642 1.21168 0.89136 0.95338 0.95814 1.20821 0.99342 0.92984 1.03412 0.90476 0.91109 0.90458 0.84133 0.83419 0.75457 0.92174 0.90877 0.92833 0.91735 0.88220 0.96666 0.93795 0.96296 0.95964 0.90517 0.92121 0.90117 0.90231 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 9.62 36.01 0.35 -0.18 16 2 C -0.12 -0.95 5.91 -104.36 -0.62 -1.57 16 3 C -0.08 -0.67 9.85 -39.31 -0.39 -1.06 16 4 C -0.12 -1.24 9.63 -39.05 -0.38 -1.62 16 5 C 0.08 1.05 6.75 -83.01 -0.56 0.49 16 6 C 0.57 8.55 7.78 -12.18 -0.09 8.45 16 7 O -0.54 -9.29 16.00 5.36 0.09 -9.21 16 8 N -0.70 -10.10 5.09 -54.47 -0.28 -10.38 16 9 C 0.15 2.23 2.40 -67.75 -0.16 2.07 16 10 H 0.08 1.35 7.60 -51.93 -0.39 0.96 16 11 C -0.12 -2.02 5.41 -26.65 -0.14 -2.17 16 12 C -0.10 -1.58 5.37 -27.96 -0.15 -1.73 16 13 C -0.11 -2.16 2.81 -90.76 -0.26 -2.41 16 14 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.17 3.97 4.81 -2.86 -0.01 3.96 16 16 N -0.61 -15.53 3.41 -169.63 -0.58 -16.11 16 17 C -0.22 -6.20 10.28 -15.06 -0.15 -6.36 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -27.00 10.11 55.49 0.56 -26.44 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.14 2.91 6.55 -2.43 -0.02 2.89 16 26 C -0.09 -1.56 3.57 -88.85 -0.32 -1.87 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 C -0.11 -1.81 4.18 -26.72 -0.11 -1.93 16 29 N -0.45 -5.57 9.45 -6.06 -0.06 -5.62 16 30 C 0.13 1.23 6.78 -82.61 -0.56 0.67 16 31 C -0.11 -0.75 9.77 36.01 0.35 -0.40 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.08 0.29 5.95 -51.93 -0.31 -0.02 16 35 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.15 1.50 7.64 -52.49 -0.40 1.10 16 37 H 0.41 5.57 7.93 -40.82 -0.32 5.24 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.30 6.80 -51.93 -0.35 0.95 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 2.74 5.96 -51.93 -0.31 2.43 16 43 H 0.02 0.39 6.20 -51.93 -0.32 0.07 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.46 7.73 -51.93 -0.40 0.06 16 47 H 0.08 1.40 7.23 -51.93 -0.38 1.03 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.37 5.94 -51.93 -0.31 0.07 16 51 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -32.51 394.57 -10.78 -43.28 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -8.12 Total: 4.48 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -3.32 Total: -3.19 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.35 Total: -58.55 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.51 -10.78 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980152870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.018 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds