Wall clock time and date at job start Wed Apr 1 2020 02:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38626 * 120.32306 * 2 1 4 4 C 1.38593 * 118.48995 * 179.72497 * 3 2 1 5 5 C 1.39310 * 119.05805 * 0.49677 * 4 3 2 6 6 C 1.48166 * 119.72264 * 179.77004 * 5 4 3 7 7 O 1.21508 * 120.00250 * 359.72652 * 6 5 4 8 8 N 1.34781 * 119.99526 * 179.72486 * 6 5 4 9 9 C 1.46504 * 119.99557 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.67747 * 35.50528 * 9 8 6 11 11 C 1.53332 * 109.67698 * 274.99630 * 9 8 6 12 12 C 1.52817 * 108.09145 * 176.10147 * 11 9 8 13 13 C 1.50739 * 111.74276 * 58.92678 * 12 11 9 14 14 H 1.09007 * 108.78053 * 186.59659 * 13 12 11 15 15 C 1.53896 * 113.02240 * 65.12966 * 13 12 11 16 16 N 1.47812 * 104.06429 * 198.52773 * 15 13 12 17 17 C 1.36941 * 125.65013 * 203.37009 * 16 15 13 18 18 H 1.07999 * 120.00290 * 179.97438 * 17 16 15 19 19 C 1.38811 * 120.00057 * 359.97438 * 17 16 15 20 20 N 1.31624 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00405 * 180.02562 * 19 17 16 22 22 H 1.48511 * 109.47068 * 59.99739 * 21 19 17 23 23 H 1.48499 * 109.47620 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47055 * 300.00295 * 21 19 17 25 25 C 1.47167 * 108.70351 * 23.34787 * 16 15 13 26 26 C 1.53998 * 113.94438 * 308.69072 * 13 12 11 27 27 H 1.09002 * 112.20626 * 280.64306 * 26 13 12 28 28 C 1.53001 * 111.52344 * 47.32558 * 26 13 12 29 29 N 1.32724 * 120.55100 * 359.49579 * 5 4 3 30 30 C 1.31526 * 121.64189 * 0.24955 * 29 5 4 31 31 C 1.50699 * 119.54477 * 180.02562 * 30 29 5 32 32 H 1.08999 * 109.46988 * 270.02253 * 1 2 3 33 33 H 1.09000 * 109.47203 * 30.02114 * 1 2 3 34 34 H 1.09004 * 109.46586 * 150.02074 * 1 2 3 35 35 H 1.08003 * 120.75454 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.47438 * 180.26196 * 4 3 2 37 37 H 0.97001 * 120.00513 * 359.97438 * 8 6 5 38 38 H 1.09005 * 109.73421 * 56.45562 * 11 9 8 39 39 H 1.09000 * 109.78104 * 295.77858 * 11 9 8 40 40 H 1.08997 * 109.02958 * 298.34359 * 12 11 9 41 41 H 1.08995 * 108.96963 * 179.46663 * 12 11 9 42 42 H 1.09001 * 110.51215 * 79.88344 * 15 13 12 43 43 H 1.09001 * 110.51087 * 317.17828 * 15 13 12 44 44 H 0.97004 * 120.00080 * 179.97438 * 20 19 17 45 45 H 1.08992 * 109.96534 * 241.57825 * 25 16 15 46 46 H 1.09002 * 109.96321 * 120.33232 * 25 16 15 47 47 H 1.09006 * 109.16198 * 67.66314 * 28 26 13 48 48 H 1.09001 * 109.16199 * 186.84632 * 28 26 13 49 49 H 1.09000 * 109.46779 * 90.00589 * 31 30 29 50 50 H 1.08997 * 109.47025 * 210.00233 * 31 30 29 51 51 H 1.09000 * 109.47591 * 330.00589 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 0.0058 5 6 4.2295 -0.0865 0.0009 6 6 5.7097 -0.1510 0.0019 7 8 6.3626 0.8738 0.0020 8 7 6.3320 -1.3465 0.0028 9 6 7.7957 -1.4103 0.0043 10 1 8.1982 -0.5915 0.6007 11 6 8.3185 -1.3075 -1.4335 12 6 9.8455 -1.2792 -1.3823 13 6 10.4050 -2.5120 -0.7194 14 1 11.4819 -2.3897 -0.6027 15 6 10.1249 -3.8011 -1.5119 16 7 10.3220 -4.8812 -0.5222 17 6 10.6291 -6.1837 -0.8127 18 1 10.7537 -6.9002 -0.0143 19 6 10.7802 -6.5831 -2.1335 20 7 10.6289 -5.7098 -3.1066 21 14 11.1984 -8.3600 -2.5300 22 1 10.1299 -9.2487 -2.0064 23 1 11.3037 -8.5273 -4.0018 24 1 12.4934 -8.7169 -1.8968 25 6 10.1342 -4.3248 0.8272 26 6 9.7786 -2.8226 0.6527 27 1 10.1962 -2.2027 1.4461 28 6 8.2515 -2.7424 0.6038 29 7 3.5218 -1.2093 0.0009 30 6 2.2066 -1.1960 0.0005 31 6 1.4503 -2.4994 0.0010 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6846 2.1419 -0.0004 36 1 4.1693 2.0651 0.0103 37 1 5.8109 -2.1647 0.0031 38 1 7.9486 -0.3918 -1.8950 39 1 7.9854 -2.1706 -2.0097 40 1 10.1662 -0.3993 -0.8245 41 1 10.2330 -1.2157 -2.3991 42 1 10.8313 -3.9043 -2.3355 43 1 9.1002 -3.8059 -1.8835 44 1 10.7349 -5.9889 -4.0296 45 1 11.0545 -4.4250 1.4025 46 1 9.3201 -4.8434 1.3336 47 1 7.8702 -3.5545 -0.0154 48 1 7.8552 -2.8474 1.6137 49 1 1.2676 -2.8130 1.0288 50 1 0.4983 -2.3673 -0.5132 51 1 2.0378 -3.2607 -0.5121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980152870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:52 Heat of formation + Delta-G solvation = -9.850349 kcal Electronic energy + Delta-G solvation = -30161.122273 eV Core-core repulsion = 26252.304401 eV Total energy + Delta-G solvation = -3908.817872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.86795 -41.05283 -39.89890 -36.97236 -35.22729 -34.78122 -34.01403 -33.59989 -31.90904 -30.57322 -29.26405 -28.44579 -27.58781 -26.79231 -24.41062 -23.68150 -23.44147 -22.48567 -21.88503 -21.21312 -19.85843 -18.92897 -18.72859 -17.78329 -17.09522 -16.66539 -16.51483 -16.35219 -16.21427 -15.73532 -15.59744 -15.50062 -14.97000 -14.77942 -14.63962 -14.17638 -14.06070 -13.86421 -13.76981 -13.66610 -13.58731 -13.42533 -13.18372 -13.03475 -12.96898 -12.77786 -12.66702 -12.56815 -12.33244 -12.23331 -12.04244 -11.86541 -11.63840 -11.55731 -11.17738 -11.06921 -10.95814 -10.78113 -10.65955 -10.52476 -10.12759 -9.76767 -8.83050 -7.75152 -5.18018 -0.40693 0.20482 1.45531 1.48772 1.55121 1.64400 2.02226 2.50818 2.77743 3.01328 3.34545 3.58388 3.66865 3.72626 3.78396 3.80018 3.87192 3.93505 4.00364 4.17036 4.22277 4.24768 4.33962 4.48957 4.54151 4.56707 4.58944 4.67187 4.70323 4.73306 4.75486 4.85419 4.89777 4.94437 4.99656 5.04884 5.07747 5.11462 5.14138 5.22780 5.24078 5.26805 5.28373 5.37190 5.48365 5.51386 5.59051 5.69278 5.75907 5.89301 6.32927 6.37978 6.78505 7.09459 7.13273 7.81698 8.46922 9.26895 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002474 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.872441 B =11314.940229 C =12472.275941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.108 4.108 3 C -0.080 4.080 4 C -0.121 4.121 5 C 0.048 3.952 6 C 0.569 3.431 7 O -0.566 6.566 8 N -0.699 5.699 9 C 0.155 3.845 10 H 0.089 0.911 11 C -0.118 4.118 12 C -0.090 4.090 13 C -0.101 4.101 14 H 0.061 0.939 15 C 0.174 3.826 16 N -0.628 5.628 17 C -0.237 4.237 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.132 3.868 26 C -0.075 4.075 27 H 0.109 0.891 28 C -0.103 4.103 29 N -0.477 5.477 30 C 0.108 3.892 31 C -0.107 4.107 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.175 0.825 36 H 0.147 0.853 37 H 0.412 0.588 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.061 0.939 43 H -0.008 1.008 44 H 0.245 0.755 45 H 0.023 0.977 46 H 0.026 0.974 47 H 0.048 0.952 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.105 0.895 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.970 14.661 8.357 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.110 4.110 3 C -0.105 4.105 4 C -0.142 4.142 5 C -0.089 4.089 6 C 0.355 3.645 7 O -0.446 6.446 8 N -0.348 5.348 9 C 0.051 3.949 10 H 0.107 0.893 11 C -0.156 4.156 12 C -0.128 4.128 13 C -0.121 4.121 14 H 0.079 0.921 15 C 0.049 3.951 16 N -0.354 5.354 17 C -0.367 4.367 18 H 0.096 0.904 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.807 3.193 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.203 1.203 25 C 0.007 3.993 26 C -0.095 4.095 27 H 0.127 0.873 28 C -0.141 4.141 29 N -0.189 5.189 30 C -0.033 4.033 31 C -0.164 4.164 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.193 0.807 36 H 0.165 0.835 37 H 0.249 0.751 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.010 0.990 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.067 0.933 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.124 0.876 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.959 14.427 8.209 26.735 hybrid contribution 0.092 -0.839 -0.651 1.066 sum -20.866 13.588 7.558 26.022 Atomic orbital electron populations 1.20990 0.86982 1.04950 1.04205 1.21394 0.99758 0.92710 0.97162 1.21902 0.92528 1.00076 0.96012 1.22234 0.96267 0.98178 0.97564 1.20972 0.93204 0.90833 1.03867 1.18211 0.86753 0.83605 0.75920 1.90733 1.66784 1.34910 1.52124 1.45950 1.07651 1.08648 1.72520 1.20991 0.78492 0.98805 0.96567 0.89254 1.21821 0.96363 1.00980 0.96446 1.20737 0.94202 0.96989 1.00899 1.21599 0.99450 0.95382 0.95662 0.92063 1.21480 0.97112 0.84319 0.92171 1.44917 1.82374 1.06140 1.01998 1.19412 1.39287 0.85718 0.92239 0.90356 1.25613 1.02949 1.02021 0.95522 1.70094 1.57515 1.33679 0.98534 0.85155 0.78256 0.79608 0.76330 1.20502 1.22054 1.20328 1.21798 0.97321 0.93096 0.87071 1.22057 0.94426 0.95298 0.97676 0.87259 1.21700 0.95583 0.95535 1.01243 1.67327 1.09585 1.30486 1.11531 1.21739 0.88575 0.97310 0.95702 1.20911 0.99866 0.91327 1.04255 0.88998 0.89502 0.89321 0.80716 0.83497 0.75124 0.92089 0.93234 0.90175 0.92203 0.92130 0.99037 0.94529 0.95867 0.95565 0.93306 0.89963 0.89085 0.87642 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.62 71.24 0.69 0.10 16 2 C -0.11 -1.44 5.91 -19.70 -0.12 -1.55 16 3 C -0.08 -1.12 9.85 22.45 0.22 -0.89 16 4 C -0.12 -2.53 9.63 22.61 0.22 -2.31 16 5 C 0.05 1.26 6.75 41.91 0.28 1.55 16 6 C 0.57 17.32 7.78 86.88 0.68 17.99 16 7 O -0.57 -19.75 16.00 -3.74 -0.06 -19.81 16 8 N -0.70 -20.40 5.09 -444.53 -2.26 -22.66 16 9 C 0.16 4.70 2.40 45.11 0.11 4.81 16 10 H 0.09 2.70 7.60 -2.39 -0.02 2.68 16 11 C -0.12 -3.88 5.41 30.64 0.17 -3.72 16 12 C -0.09 -2.94 5.37 29.80 0.16 -2.78 16 13 C -0.10 -3.86 2.81 -10.89 -0.03 -3.89 16 14 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 15 C 0.17 8.71 4.81 86.43 0.42 9.13 16 16 N -0.63 -33.00 3.41 -690.58 -2.35 -35.35 16 17 C -0.24 -13.61 10.28 84.03 0.86 -12.75 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 20 N -0.95 -57.83 10.11 21.65 0.22 -57.61 16 21 Si 0.98 46.64 29.55 68.60 2.03 48.66 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 23 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 C 0.13 5.50 6.55 87.06 0.57 6.07 16 26 C -0.08 -2.54 3.57 -9.65 -0.03 -2.57 16 27 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 28 C -0.10 -3.21 4.18 30.60 0.13 -3.09 16 29 N -0.48 -11.67 9.45 -173.08 -1.64 -13.31 16 30 C 0.11 1.95 6.78 42.68 0.29 2.24 16 31 C -0.11 -1.29 9.77 71.24 0.70 -0.59 16 32 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.09 0.23 8.09 -2.39 -0.02 0.21 16 34 H 0.09 0.29 5.95 -2.38 -0.01 0.27 16 35 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.15 2.97 7.64 -2.91 -0.02 2.94 16 37 H 0.41 11.55 7.93 -92.71 -0.74 10.81 16 38 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.05 1.86 6.80 -2.39 -0.02 1.85 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 3.52 5.96 -2.39 -0.01 3.51 16 43 H -0.01 -0.45 6.20 -2.39 -0.01 -0.46 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.03 1.08 7.73 -2.39 -0.02 1.06 16 47 H 0.05 1.82 7.23 -2.38 -0.02 1.80 16 48 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.11 0.68 5.94 -2.39 -0.01 0.67 16 51 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.88 394.57 1.91 -71.98 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.21 Total: 23.87 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.76 Total: 4.22 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -6.03 Total: -128.92 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.06 Total: -19.81 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.88 1.91 -71.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980152870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.128 kcal (2) G-P(sol) polarization free energy of solvation -73.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds