Wall clock time and date at job start Wed Apr 1 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31884 * 119.62179 * 2 1 4 4 C 1.31855 * 121.72525 * 180.02562 * 3 2 1 5 5 C 1.38223 * 120.76605 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.15978 * 0.26226 * 5 4 3 7 7 C 1.38183 * 119.61303 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.42364 * 0.02562 * 7 2 1 9 9 C 1.50692 * 109.46949 * 85.00133 * 8 7 2 10 10 O 1.21277 * 120.00424 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99862 * 180.02562 * 11 9 8 13 13 H 1.08991 * 109.03364 * 35.00225 * 12 11 9 14 14 C 1.52531 * 109.04501 * 276.03242 * 12 11 9 15 15 C 1.53812 * 111.71281 * 293.49739 * 14 12 11 16 16 C 1.51616 * 107.02824 * 302.45797 * 15 14 12 17 17 H 1.08996 * 110.51416 * 304.77150 * 16 15 14 18 18 C 1.53066 * 116.66597 * 176.22672 * 16 15 14 19 19 N 1.48665 * 103.44715 * 204.13102 * 18 16 15 20 20 C 1.36937 * 125.78692 * 204.33464 * 19 18 16 21 21 H 1.07991 * 119.99922 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99777 * 0.04786 * 20 19 18 23 23 N 1.31619 * 120.00435 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99875 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47269 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47295 * 120.00031 * 24 22 20 27 27 H 1.48505 * 109.47078 * 239.99558 * 24 22 20 28 28 C 1.48246 * 108.42785 * 24.37509 * 19 18 16 29 29 C 1.52319 * 105.86589 * 3.19018 * 28 19 18 30 30 H 1.08995 * 109.88637 * 87.66350 * 29 28 19 31 31 C 1.51284 * 117.48190 * 214.68996 * 29 28 19 32 32 H 1.09004 * 109.47164 * 89.99726 * 1 2 3 33 33 H 1.08998 * 109.47645 * 209.99697 * 1 2 3 34 34 H 1.09000 * 109.46970 * 329.99998 * 1 2 3 35 35 H 1.08005 * 119.61445 * 179.97438 * 4 3 2 36 36 H 1.08002 * 120.41617 * 179.97438 * 5 4 3 37 37 H 1.08003 * 120.79223 * 179.72202 * 6 5 4 38 38 H 1.08996 * 109.47359 * 205.00708 * 8 7 2 39 39 H 1.09003 * 109.46452 * 325.00520 * 8 7 2 40 40 H 0.97000 * 119.99891 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.02780 * 54.06830 * 14 12 11 42 42 H 1.08994 * 109.03323 * 172.92119 * 14 12 11 43 43 H 1.09001 * 109.94373 * 61.83578 * 15 14 12 44 44 H 1.08996 * 109.94051 * 182.99489 * 15 14 12 45 45 H 1.09002 * 110.62647 * 322.61466 * 18 16 15 46 46 H 1.08991 * 110.63363 * 85.64360 * 18 16 15 47 47 H 0.97000 * 120.00360 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.17044 * 244.08396 * 28 19 18 49 49 H 1.09007 * 110.16959 * 122.28733 * 28 19 18 50 50 H 1.09000 * 109.95879 * 59.38696 * 31 29 28 51 51 H 1.08999 * 109.84989 * 298.20466 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1949 -0.0005 5 6 4.2267 0.0339 -0.0016 6 6 3.5765 -1.1904 -0.0077 7 6 2.1898 -1.2013 0.0005 8 6 1.4371 -2.5069 0.0005 9 6 1.0796 -2.8806 -1.4149 10 8 1.4043 -2.1582 -2.3333 11 7 0.3988 -4.0177 -1.6602 12 6 0.0517 -4.3811 -3.0363 13 1 0.8542 -4.0624 -3.7013 14 6 -1.2358 -3.6646 -3.4307 15 6 -2.4400 -4.1697 -2.6179 16 6 -2.5383 -5.6644 -2.8521 17 1 -2.5994 -5.8807 -3.9187 18 6 -3.6195 -6.4129 -2.0687 19 7 -3.1076 -7.8077 -2.0194 20 6 -3.8687 -8.9348 -1.8594 21 1 -3.3971 -9.9060 -1.8365 22 6 -5.2464 -8.8289 -1.7271 23 7 -5.8212 -7.6452 -1.7550 24 14 -6.2847 -10.3665 -1.5096 25 1 -5.4047 -11.5626 -1.5124 26 1 -7.0153 -10.2919 -0.2189 27 1 -7.2598 -10.4672 -2.6251 28 6 -1.6335 -7.7716 -2.1719 29 6 -1.2574 -6.2969 -2.2351 30 1 -1.1012 -5.9107 -1.2279 31 6 -0.0999 -5.9093 -3.1288 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 3.9754 2.1528 -0.0009 36 1 5.3057 0.0802 -0.0024 37 1 4.1366 -2.1138 -0.0132 38 1 2.0623 -3.2868 0.4354 39 1 0.5261 -2.4010 0.5896 40 1 0.1387 -4.5953 -0.9257 41 1 -1.1143 -2.5952 -3.2588 42 1 -1.4263 -3.8336 -4.4905 43 1 -2.2836 -3.9690 -1.5580 44 1 -3.3511 -3.6780 -2.9587 45 1 -3.7173 -6.0041 -1.0630 46 1 -4.5729 -6.3722 -2.5952 47 1 -6.7840 -7.5712 -1.6630 48 1 -1.3385 -8.2746 -3.0928 49 1 -1.1552 -8.2451 -1.3144 50 1 -0.3107 -6.2004 -4.1578 51 1 0.8129 -6.3949 -2.7837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980169381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:54 Heat of formation + Delta-G solvation = 16.110727 kcal Electronic energy + Delta-G solvation = -30389.922086 eV Core-core repulsion = 26482.229972 eV Total energy + Delta-G solvation = -3907.692115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.89200 -40.11822 -38.66549 -35.70054 -34.01957 -33.25801 -33.17954 -31.89634 -30.78265 -29.30176 -28.53993 -27.37361 -26.21902 -25.07606 -23.18315 -22.29226 -21.99943 -20.90264 -20.60013 -19.81352 -18.93542 -17.32556 -17.09065 -16.76844 -16.65796 -16.05042 -15.32464 -15.01371 -14.83060 -14.74433 -14.34551 -14.14932 -13.81252 -13.57555 -13.43852 -13.31206 -13.26393 -12.85359 -12.66189 -12.54124 -12.42038 -12.25760 -12.03655 -11.95295 -11.56122 -11.48666 -11.20037 -11.03481 -10.86749 -10.77208 -10.65178 -10.13800 -10.05478 -9.94373 -9.85608 -9.80493 -9.64825 -9.55917 -9.26645 -8.99339 -8.94307 -8.67385 -6.84449 -5.65989 -3.06928 0.87324 1.07743 2.56025 3.11418 3.38430 3.44015 3.46447 3.62844 4.08885 4.33223 4.46582 4.51807 4.62566 4.70509 4.74508 4.85235 4.91896 5.03333 5.04436 5.10901 5.30871 5.33084 5.37362 5.38826 5.42005 5.50524 5.51893 5.62912 5.65512 5.72126 5.81515 5.86860 5.93517 5.99928 6.01274 6.12756 6.16508 6.22812 6.23092 6.36811 6.49021 6.50103 6.57425 6.62336 6.64195 6.82637 7.00200 7.46147 7.52341 7.60935 7.80353 7.85100 8.16821 8.32556 9.19477 9.80761 10.47177 11.38451 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.002191 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.431585 B =12778.787620 C =13032.035446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.146 3.854 3 N -0.486 5.486 4 C 0.100 3.900 5 C -0.181 4.181 6 C -0.061 4.061 7 C -0.115 4.115 8 C -0.105 4.105 9 C 0.515 3.485 10 O -0.537 6.537 11 N -0.720 5.720 12 C 0.152 3.848 13 H 0.082 0.918 14 C -0.126 4.126 15 C -0.099 4.099 16 C -0.114 4.114 17 H 0.069 0.931 18 C 0.164 3.836 19 N -0.608 5.608 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.143 3.857 29 C -0.107 4.107 30 H 0.064 0.936 31 C -0.109 4.109 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.401 0.599 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.012 0.988 46 H 0.103 0.897 47 H 0.251 0.749 48 H 0.022 0.978 49 H 0.023 0.977 50 H 0.079 0.921 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.881 13.421 3.390 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.201 4.201 6 C -0.087 4.087 7 C -0.117 4.117 8 C -0.145 4.145 9 C 0.301 3.699 10 O -0.414 6.414 11 N -0.373 5.373 12 C 0.048 3.952 13 H 0.100 0.900 14 C -0.165 4.165 15 C -0.137 4.137 16 C -0.134 4.134 17 H 0.088 0.912 18 C 0.040 3.960 19 N -0.335 5.335 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.208 4.208 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.018 3.982 29 C -0.126 4.126 30 H 0.082 0.918 31 C -0.148 4.148 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.171 0.829 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.237 0.763 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.030 0.970 46 H 0.121 0.879 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.041 0.959 50 H 0.098 0.902 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.421 14.634 2.745 22.917 hybrid contribution -0.033 -1.913 0.527 1.984 sum 17.389 12.722 3.272 21.792 Atomic orbital electron populations 1.20807 0.88961 1.03350 1.03588 1.21073 0.96916 0.87689 0.93431 1.67525 1.10071 1.29108 1.12835 1.22711 0.89506 0.98419 0.95064 1.22055 1.01345 0.93395 1.03288 1.21426 0.93567 0.98570 0.95114 1.20064 0.94169 0.94907 1.02553 1.20686 1.02328 0.95728 0.95759 1.20380 0.77686 0.81092 0.90731 1.90716 1.53780 1.50751 1.46115 1.46261 1.57148 1.23888 1.10043 1.21040 0.97032 0.94614 0.82539 0.90038 1.21915 0.94455 0.99696 1.00425 1.21256 0.96909 0.96002 0.99522 1.22401 0.97057 0.93590 1.00335 0.91236 1.21619 0.96223 0.81958 0.96211 1.45141 0.99552 1.02960 1.85830 1.19123 0.88543 0.85400 1.41737 0.90544 1.24773 0.96524 0.96927 1.02619 1.69823 1.09233 1.20645 1.57391 0.86025 0.80347 0.81957 0.77338 1.20587 1.21811 1.21787 1.20973 0.86781 0.92843 0.97644 1.21744 0.95280 0.97481 0.98081 0.91787 1.21568 0.98710 0.93205 1.01268 0.89926 0.90614 0.90405 0.82879 0.84883 0.85015 0.87811 0.87260 0.76287 0.92037 0.91419 0.92339 0.91934 0.97020 0.87885 0.93850 0.95969 0.95923 0.90211 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.77 36.00 0.35 -0.73 16 2 C 0.15 1.69 6.78 -82.59 -0.56 1.13 16 3 N -0.49 -5.92 10.27 -9.47 -0.10 -6.02 16 4 C 0.10 0.97 11.18 -17.55 -0.20 0.78 16 5 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 16 6 C -0.06 -0.56 9.84 -39.28 -0.39 -0.95 16 7 C -0.11 -1.18 4.39 -104.48 -0.46 -1.64 16 8 C -0.10 -0.88 5.35 -29.04 -0.16 -1.04 16 9 C 0.52 5.85 7.73 -10.99 -0.08 5.77 16 10 O -0.54 -8.17 15.68 5.56 0.09 -8.09 16 11 N -0.72 -7.65 4.66 -53.62 -0.25 -7.90 16 12 C 0.15 1.82 2.70 -67.73 -0.18 1.63 16 13 H 0.08 1.04 7.55 -51.93 -0.39 0.65 16 14 C -0.13 -1.63 5.42 -26.55 -0.14 -1.77 16 15 C -0.10 -1.43 5.57 -27.01 -0.15 -1.58 16 16 C -0.11 -2.00 2.50 -89.89 -0.22 -2.22 16 17 H 0.07 1.27 8.01 -51.93 -0.42 0.86 16 18 C 0.16 3.81 5.53 -2.81 -0.02 3.79 16 19 N -0.61 -15.13 3.45 -170.42 -0.59 -15.71 16 20 C -0.22 -6.03 10.30 -15.06 -0.16 -6.18 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 23 N -0.92 -26.54 10.11 55.49 0.56 -25.98 16 24 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.14 2.81 6.98 -3.43 -0.02 2.79 16 29 C -0.11 -1.65 2.23 -90.44 -0.20 -1.85 16 30 H 0.06 0.94 6.13 -51.93 -0.32 0.62 16 31 C -0.11 -1.35 5.35 -27.16 -0.15 -1.49 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.60 6.02 -51.93 -0.31 0.29 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 39 H 0.11 0.75 6.17 -51.93 -0.32 0.43 16 40 H 0.40 3.74 6.82 -40.82 -0.28 3.47 16 41 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 2.75 5.93 -51.93 -0.31 2.44 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 1.00 8.03 -51.93 -0.42 0.59 16 51 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -33.42 396.31 -10.77 -44.19 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.20 Total: 2.66 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.23 Total: -5.97 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.37 Total: -55.61 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.42 -10.77 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980169381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.298 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds