Wall clock time and date at job start Wed Apr 1 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31884 * 119.62179 * 2 1 4 4 C 1.31855 * 121.72525 * 180.02562 * 3 2 1 5 5 C 1.38223 * 120.76605 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.15978 * 0.26226 * 5 4 3 7 7 C 1.38183 * 119.61303 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.42364 * 0.02562 * 7 2 1 9 9 C 1.50692 * 109.46949 * 85.00133 * 8 7 2 10 10 O 1.21277 * 120.00424 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99862 * 180.02562 * 11 9 8 13 13 H 1.08991 * 109.03364 * 35.00225 * 12 11 9 14 14 C 1.52531 * 109.04501 * 276.03242 * 12 11 9 15 15 C 1.53812 * 111.71281 * 293.49739 * 14 12 11 16 16 C 1.51616 * 107.02824 * 302.45797 * 15 14 12 17 17 H 1.08996 * 110.51416 * 304.77150 * 16 15 14 18 18 C 1.53066 * 116.66597 * 176.22672 * 16 15 14 19 19 N 1.48665 * 103.44715 * 204.13102 * 18 16 15 20 20 C 1.36937 * 125.78692 * 204.33464 * 19 18 16 21 21 H 1.07991 * 119.99922 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99777 * 0.04786 * 20 19 18 23 23 N 1.31619 * 120.00435 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99875 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47269 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47295 * 120.00031 * 24 22 20 27 27 H 1.48505 * 109.47078 * 239.99558 * 24 22 20 28 28 C 1.48246 * 108.42785 * 24.37509 * 19 18 16 29 29 C 1.52319 * 105.86589 * 3.19018 * 28 19 18 30 30 H 1.08995 * 109.88637 * 87.66350 * 29 28 19 31 31 C 1.51284 * 117.48190 * 214.68996 * 29 28 19 32 32 H 1.09004 * 109.47164 * 89.99726 * 1 2 3 33 33 H 1.08998 * 109.47645 * 209.99697 * 1 2 3 34 34 H 1.09000 * 109.46970 * 329.99998 * 1 2 3 35 35 H 1.08005 * 119.61445 * 179.97438 * 4 3 2 36 36 H 1.08002 * 120.41617 * 179.97438 * 5 4 3 37 37 H 1.08003 * 120.79223 * 179.72202 * 6 5 4 38 38 H 1.08996 * 109.47359 * 205.00708 * 8 7 2 39 39 H 1.09003 * 109.46452 * 325.00520 * 8 7 2 40 40 H 0.97000 * 119.99891 * 0.02562 * 11 9 8 41 41 H 1.09000 * 109.02780 * 54.06830 * 14 12 11 42 42 H 1.08994 * 109.03323 * 172.92119 * 14 12 11 43 43 H 1.09001 * 109.94373 * 61.83578 * 15 14 12 44 44 H 1.08996 * 109.94051 * 182.99489 * 15 14 12 45 45 H 1.09002 * 110.62647 * 322.61466 * 18 16 15 46 46 H 1.08991 * 110.63363 * 85.64360 * 18 16 15 47 47 H 0.97000 * 120.00360 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.17044 * 244.08396 * 28 19 18 49 49 H 1.09007 * 110.16959 * 122.28733 * 28 19 18 50 50 H 1.09000 * 109.95879 * 59.38696 * 31 29 28 51 51 H 1.08999 * 109.84989 * 298.20466 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1949 -0.0005 5 6 4.2267 0.0339 -0.0016 6 6 3.5765 -1.1904 -0.0077 7 6 2.1898 -1.2013 0.0005 8 6 1.4371 -2.5069 0.0005 9 6 1.0796 -2.8806 -1.4149 10 8 1.4043 -2.1582 -2.3333 11 7 0.3988 -4.0177 -1.6602 12 6 0.0517 -4.3811 -3.0363 13 1 0.8542 -4.0624 -3.7013 14 6 -1.2358 -3.6646 -3.4307 15 6 -2.4400 -4.1697 -2.6179 16 6 -2.5383 -5.6644 -2.8521 17 1 -2.5994 -5.8807 -3.9187 18 6 -3.6195 -6.4129 -2.0687 19 7 -3.1076 -7.8077 -2.0194 20 6 -3.8687 -8.9348 -1.8594 21 1 -3.3971 -9.9060 -1.8365 22 6 -5.2464 -8.8289 -1.7271 23 7 -5.8212 -7.6452 -1.7550 24 14 -6.2847 -10.3665 -1.5096 25 1 -5.4047 -11.5626 -1.5124 26 1 -7.0153 -10.2919 -0.2189 27 1 -7.2598 -10.4672 -2.6251 28 6 -1.6335 -7.7716 -2.1719 29 6 -1.2574 -6.2969 -2.2351 30 1 -1.1012 -5.9107 -1.2279 31 6 -0.0999 -5.9093 -3.1288 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 3.9754 2.1528 -0.0009 36 1 5.3057 0.0802 -0.0024 37 1 4.1366 -2.1138 -0.0132 38 1 2.0623 -3.2868 0.4354 39 1 0.5261 -2.4010 0.5896 40 1 0.1387 -4.5953 -0.9257 41 1 -1.1143 -2.5952 -3.2588 42 1 -1.4263 -3.8336 -4.4905 43 1 -2.2836 -3.9690 -1.5580 44 1 -3.3511 -3.6780 -2.9587 45 1 -3.7173 -6.0041 -1.0630 46 1 -4.5729 -6.3722 -2.5952 47 1 -6.7840 -7.5712 -1.6630 48 1 -1.3385 -8.2746 -3.0928 49 1 -1.1552 -8.2451 -1.3144 50 1 -0.3107 -6.2004 -4.1578 51 1 0.8129 -6.3949 -2.7837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980169381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:53 Heat of formation + Delta-G solvation = -3.970166 kcal Electronic energy + Delta-G solvation = -30390.792859 eV Core-core repulsion = 26482.229972 eV Total energy + Delta-G solvation = -3908.562888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73706 -41.10911 -39.79998 -37.10830 -34.77367 -34.69117 -33.87650 -33.44525 -32.03420 -30.71257 -29.50311 -28.19666 -27.62952 -26.79461 -23.94961 -23.50819 -23.02725 -21.93050 -21.65409 -21.44614 -20.09027 -18.76156 -18.18008 -17.78947 -17.39009 -17.06686 -16.73312 -16.25879 -15.83114 -15.68225 -15.52779 -15.42577 -15.15550 -14.79541 -14.48624 -14.25023 -14.04213 -13.97332 -13.89075 -13.56148 -13.43065 -13.40814 -13.21388 -12.99049 -12.91766 -12.81025 -12.60813 -12.53881 -12.33346 -12.17998 -11.93348 -11.90181 -11.68571 -11.37649 -11.00965 -10.96134 -10.77286 -10.65650 -10.57444 -10.37234 -9.94468 -9.70211 -8.84768 -7.74725 -5.17722 0.17325 0.38714 1.47040 1.47514 1.57713 1.72010 2.29025 2.50615 2.90208 3.35218 3.42920 3.59270 3.64838 3.66061 3.76513 3.88284 3.92465 3.97284 4.06029 4.13443 4.17694 4.39214 4.44373 4.48346 4.51962 4.56630 4.63092 4.69639 4.70901 4.73399 4.75757 4.79147 4.83611 4.88514 4.99414 5.03094 5.11650 5.15892 5.16887 5.22481 5.26604 5.30539 5.33942 5.43108 5.50062 5.60250 5.64009 5.78008 5.84204 5.87789 6.32657 6.63662 7.08884 7.12268 7.33504 7.79870 8.45942 9.27489 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023795 B = 0.002191 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.431585 B =12778.787620 C =13032.035446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.119 3.881 3 N -0.519 5.519 4 C 0.083 3.917 5 C -0.179 4.179 6 C -0.071 4.071 7 C -0.125 4.125 8 C -0.100 4.100 9 C 0.518 3.482 10 O -0.578 6.578 11 N -0.714 5.714 12 C 0.159 3.841 13 H 0.081 0.919 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.104 4.104 17 H 0.061 0.939 18 C 0.169 3.831 19 N -0.633 5.633 20 C -0.232 4.232 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.949 5.949 24 Si 0.976 3.024 25 H -0.267 1.267 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.137 3.863 29 C -0.088 4.088 30 H 0.077 0.923 31 C -0.097 4.097 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.175 0.825 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.410 0.590 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.055 0.945 45 H -0.010 1.010 46 H 0.062 0.938 47 H 0.245 0.755 48 H 0.025 0.975 49 H 0.030 0.970 50 H 0.081 0.919 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.430 12.832 3.976 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.018 4.018 3 N -0.229 5.229 4 C -0.073 4.073 5 C -0.198 4.198 6 C -0.096 4.096 7 C -0.128 4.128 8 C -0.139 4.139 9 C 0.306 3.694 10 O -0.457 6.457 11 N -0.367 5.367 12 C 0.054 3.946 13 H 0.099 0.901 14 C -0.156 4.156 15 C -0.128 4.128 16 C -0.123 4.123 17 H 0.079 0.921 18 C 0.044 3.956 19 N -0.360 5.360 20 C -0.361 4.361 21 H 0.097 0.903 22 C -0.263 4.263 23 N -0.599 5.599 24 Si 0.805 3.195 25 H -0.191 1.191 26 H -0.220 1.220 27 H -0.221 1.221 28 C 0.012 3.988 29 C -0.107 4.107 30 H 0.096 0.904 31 C -0.136 4.136 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.192 0.808 36 H 0.181 0.819 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.248 0.752 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.008 0.992 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.048 0.952 50 H 0.099 0.901 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 19.999 14.025 3.344 24.654 hybrid contribution -0.784 -1.725 0.342 1.925 sum 19.215 12.300 3.686 23.111 Atomic orbital electron populations 1.20796 0.88639 1.04213 1.02781 1.21353 0.97553 0.88307 0.94553 1.67500 1.11458 1.29943 1.14004 1.23194 0.89093 1.00107 0.94929 1.22417 1.02845 0.92786 1.01763 1.21838 0.93481 0.99857 0.94466 1.20290 0.94935 0.95128 1.02429 1.20738 1.03509 0.95719 0.93967 1.20821 0.76734 0.80406 0.91466 1.90708 1.55415 1.51943 1.47642 1.46181 1.56790 1.23946 1.09740 1.20879 0.96279 0.94027 0.83419 0.90075 1.21828 0.94040 0.99455 1.00317 1.21174 0.97681 0.93648 1.00294 1.22159 0.96032 0.95196 0.98938 0.92055 1.21352 0.96539 0.82487 0.95210 1.45491 1.01963 1.02818 1.85693 1.19486 0.89226 0.86569 1.40854 0.90263 1.25593 0.97794 0.99694 1.03249 1.70088 1.08891 1.22416 1.58550 0.85032 0.78597 0.79201 0.76661 1.19109 1.22046 1.22100 1.21186 0.83931 0.95828 0.97829 1.21639 0.95326 0.94270 0.99462 0.90436 1.21497 0.98042 0.93415 1.00605 0.91471 0.88878 0.90487 0.80788 0.81944 0.82654 0.84774 0.85632 0.75228 0.92401 0.91070 0.91688 0.92590 0.99224 0.91961 0.94556 0.95668 0.95241 0.90083 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.77 71.23 0.70 -1.39 16 2 C 0.12 2.69 6.78 42.54 0.29 2.97 16 3 N -0.52 -12.53 10.27 -183.89 -1.89 -14.42 16 4 C 0.08 1.53 11.18 84.69 0.95 2.48 16 5 C -0.18 -2.66 10.11 22.36 0.23 -2.43 16 6 C -0.07 -1.13 9.84 22.47 0.22 -0.91 16 7 C -0.13 -2.35 4.39 -19.77 -0.09 -2.44 16 8 C -0.10 -1.38 5.35 29.10 0.16 -1.23 16 9 C 0.52 10.46 7.73 87.65 0.68 11.14 16 10 O -0.58 -16.68 15.68 -3.02 -0.05 -16.72 16 11 N -0.71 -12.94 4.66 -441.93 -2.06 -15.00 16 12 C 0.16 3.36 2.70 45.12 0.12 3.48 16 13 H 0.08 1.84 7.55 -2.39 -0.02 1.83 16 14 C -0.12 -2.82 5.42 30.71 0.17 -2.66 16 15 C -0.09 -2.52 5.57 30.41 0.17 -2.35 16 16 C -0.10 -3.57 2.50 -10.32 -0.03 -3.60 16 17 H 0.06 2.22 8.01 -2.39 -0.02 2.20 16 18 C 0.17 8.02 5.53 85.98 0.48 8.50 16 19 N -0.63 -31.73 3.45 -693.07 -2.39 -34.13 16 20 C -0.23 -12.86 10.30 84.03 0.87 -12.00 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 23 N -0.95 -56.46 10.11 21.65 0.22 -56.25 16 24 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 28 C 0.14 5.18 6.98 85.82 0.60 5.78 16 29 C -0.09 -2.53 2.23 -10.68 -0.02 -2.55 16 30 H 0.08 2.04 6.13 -2.39 -0.01 2.03 16 31 C -0.10 -2.09 5.35 30.32 0.16 -1.93 16 32 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.09 1.37 6.02 -2.39 -0.01 1.36 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.13 1.05 8.07 -2.39 -0.02 1.03 16 39 H 0.13 1.33 6.17 -2.39 -0.01 1.31 16 40 H 0.41 6.11 6.82 -92.71 -0.63 5.48 16 41 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.74 7.84 -2.39 -0.02 1.72 16 44 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 45 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 46 H 0.06 3.49 5.93 -2.39 -0.01 3.47 16 47 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.03 0.95 8.08 -2.39 -0.02 0.93 16 49 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 50 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 51 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -75.41 396.31 2.26 -73.15 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.30 Total: 18.48 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 6.10 Total: -2.67 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -6.12 Total: -119.79 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.05 Total: -16.72 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.41 2.26 -73.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980169381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.182 kcal (2) G-P(sol) polarization free energy of solvation -75.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds