Wall clock time and date at job start Wed Apr 1 2020 02:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31887 * 119.61515 * 2 1 4 4 C 1.31851 * 121.72522 * 179.97438 * 3 2 1 5 5 C 1.38227 * 120.76477 * 359.97438 * 4 3 2 6 6 C 1.38624 * 119.16142 * 359.72614 * 5 4 3 7 7 C 1.38178 * 119.62087 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.41912 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47094 * 84.99971 * 8 7 2 10 10 O 1.21285 * 119.99881 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00216 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00149 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.79120 * 35.48996 * 12 11 9 14 14 C 1.53306 * 109.62898 * 274.99958 * 12 11 9 15 15 C 1.52838 * 108.21287 * 176.50010 * 14 12 11 16 16 C 1.50894 * 111.56768 * 59.05827 * 15 14 12 17 17 H 1.09000 * 108.32179 * 186.69185 * 16 15 14 18 18 C 1.53378 * 113.07558 * 65.83024 * 16 15 14 19 19 N 1.47426 * 106.51557 * 212.47150 * 18 16 15 20 20 C 1.36932 * 125.72843 * 179.30970 * 19 18 16 21 21 H 1.08003 * 120.00279 * 180.02562 * 20 19 18 22 22 C 1.38817 * 120.00156 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99272 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00151 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47434 * 59.99911 * 24 22 20 26 26 H 1.48507 * 109.47228 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47230 * 299.99873 * 24 22 20 28 28 C 1.47620 * 108.54648 * 359.32961 * 19 18 16 29 29 C 1.54063 * 113.56503 * 307.87153 * 16 15 14 30 30 H 1.09002 * 112.60889 * 281.00297 * 29 16 15 31 31 C 1.51227 * 109.82378 * 155.53227 * 12 11 9 32 32 H 1.09003 * 109.47319 * 270.01782 * 1 2 3 33 33 H 1.08993 * 109.47659 * 30.02618 * 1 2 3 34 34 H 1.09007 * 109.47017 * 150.02646 * 1 2 3 35 35 H 1.08002 * 119.61512 * 179.97438 * 4 3 2 36 36 H 1.08004 * 120.41676 * 180.02562 * 5 4 3 37 37 H 1.07999 * 120.78829 * 180.27545 * 6 5 4 38 38 H 1.09004 * 109.47380 * 325.00764 * 8 7 2 39 39 H 1.09000 * 109.47641 * 205.00318 * 8 7 2 40 40 H 0.96999 * 120.00317 * 0.02562 * 11 9 8 41 41 H 1.08998 * 109.71296 * 56.82476 * 14 12 11 42 42 H 1.09001 * 109.75120 * 296.19937 * 14 12 11 43 43 H 1.08994 * 109.06482 * 298.51970 * 15 14 12 44 44 H 1.09002 * 109.00352 * 179.55593 * 15 14 12 45 45 H 1.09003 * 110.04597 * 331.73169 * 18 16 15 46 46 H 1.08989 * 110.05117 * 93.15403 * 18 16 15 47 47 H 0.97000 * 119.99186 * 179.97438 * 23 22 20 48 48 H 1.08995 * 110.44039 * 266.12144 * 28 19 18 49 49 H 1.09007 * 110.43808 * 143.61531 * 28 19 18 50 50 H 1.09001 * 108.73135 * 60.89927 * 31 12 11 51 51 H 1.08991 * 108.86836 * 302.09659 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4763 1.1951 0.0005 5 6 4.2267 0.0342 0.0016 6 6 3.5766 -1.1902 0.0079 7 6 2.1899 -1.2012 0.0005 8 6 1.4374 -2.5068 0.0017 9 6 1.0787 -2.8811 -1.4133 10 8 1.4027 -2.1590 -2.3323 11 7 0.3978 -4.0183 -1.6576 12 6 0.0496 -4.3824 -3.0333 13 1 0.8482 -4.0769 -3.7094 14 6 -1.2578 -3.6895 -3.4342 15 6 -1.5441 -4.0201 -4.8987 16 6 -1.6651 -5.5081 -5.1181 17 1 -1.7485 -5.6909 -6.1894 18 6 -2.8797 -6.1231 -4.4117 19 7 -2.4906 -7.4910 -4.0234 20 6 -3.2801 -8.3874 -3.3540 21 1 -2.8993 -9.3694 -3.1151 22 6 -4.5701 -8.0339 -2.9823 23 7 -5.0343 -6.8373 -3.2740 24 14 -5.6469 -9.2564 -2.0685 25 1 -4.9944 -9.6303 -0.7880 26 1 -6.9688 -8.6399 -1.7895 27 1 -5.8338 -10.4711 -2.9020 28 6 -1.1066 -7.7321 -4.4771 29 6 -0.4724 -6.3112 -4.5648 30 1 0.3969 -6.2765 -5.2214 31 6 -0.1416 -5.8791 -3.1349 32 1 -0.3634 0.0003 1.0277 33 1 -0.3634 0.8897 -0.5142 34 1 -0.3633 -0.8903 -0.5135 35 1 3.9751 2.1531 0.0001 36 1 5.3057 0.0805 0.0024 37 1 4.1369 -2.1135 0.0134 38 1 0.5267 -2.4008 0.5913 39 1 2.0629 -3.2865 0.4363 40 1 0.1383 -4.5957 -0.9227 41 1 -1.1542 -2.6111 -3.3142 42 1 -2.0738 -4.0523 -2.8091 43 1 -0.7329 -3.6341 -5.5160 44 1 -2.4764 -3.5396 -5.1954 45 1 -3.1312 -5.5404 -3.5255 46 1 -3.7310 -6.1547 -5.0916 47 1 -5.9358 -6.5904 -3.0146 48 1 -1.1050 -8.2106 -5.4563 49 1 -0.5697 -8.3444 -3.7524 50 1 -0.9569 -6.1735 -2.4740 51 1 0.7750 -6.3741 -2.8142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980169389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:02 Heat of formation + Delta-G solvation = 9.257393 kcal Electronic energy + Delta-G solvation = -30498.970920 eV Core-core repulsion = 26590.981622 eV Total energy + Delta-G solvation = -3907.989298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.80756 -39.90304 -38.73556 -35.48824 -33.95860 -33.43021 -33.15731 -31.88609 -30.58697 -29.23627 -28.44544 -27.30812 -26.05096 -24.91596 -23.16128 -22.30116 -22.12420 -21.24757 -20.50686 -19.74953 -18.23493 -17.07713 -16.95830 -16.81235 -16.64503 -16.08030 -15.25400 -15.05829 -14.82714 -14.66653 -14.51351 -13.95592 -13.68709 -13.54566 -13.48056 -13.28693 -13.25223 -12.64948 -12.60767 -12.34409 -12.22547 -12.19096 -12.06970 -11.69128 -11.57726 -11.28202 -11.15639 -11.05549 -10.84288 -10.60615 -10.54309 -10.13761 -10.02828 -9.88279 -9.77651 -9.67989 -9.62607 -9.47938 -9.43476 -8.94639 -8.83626 -8.58187 -6.81153 -5.71080 -3.03875 0.90088 1.10781 2.63097 3.17565 3.38412 3.43477 3.44441 3.65724 4.12688 4.36446 4.49383 4.55138 4.69186 4.77019 4.81873 5.01540 5.10457 5.13836 5.15960 5.32225 5.36857 5.40973 5.45366 5.49942 5.52009 5.52166 5.62495 5.66125 5.77214 5.89295 5.89909 5.95504 5.96649 5.98717 6.04147 6.09688 6.32653 6.39008 6.48119 6.52497 6.53015 6.61235 6.67548 6.70343 6.76116 6.88240 7.02975 7.56899 7.57978 7.66830 7.83287 7.85773 8.25554 8.25787 9.22114 9.82671 10.50480 11.40354 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.002433 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.562010 B =11504.373063 C =11996.090368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.146 3.854 3 N -0.486 5.486 4 C 0.099 3.901 5 C -0.180 4.180 6 C -0.062 4.062 7 C -0.113 4.113 8 C -0.103 4.103 9 C 0.514 3.486 10 O -0.535 6.535 11 N -0.722 5.722 12 C 0.150 3.850 13 H 0.080 0.920 14 C -0.125 4.125 15 C -0.096 4.096 16 C -0.113 4.113 17 H 0.057 0.943 18 C 0.187 3.813 19 N -0.605 5.605 20 C -0.227 4.227 21 H 0.075 0.925 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.137 3.863 29 C -0.091 4.091 30 H 0.073 0.927 31 C -0.114 4.114 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.400 0.600 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.039 0.961 47 H 0.252 0.748 48 H 0.017 0.983 49 H 0.039 0.961 50 H 0.085 0.915 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.223 10.973 7.056 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.200 4.200 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.143 4.143 9 C 0.299 3.701 10 O -0.411 6.411 11 N -0.373 5.373 12 C 0.046 3.954 13 H 0.098 0.902 14 C -0.163 4.163 15 C -0.134 4.134 16 C -0.132 4.132 17 H 0.076 0.924 18 C 0.063 3.937 19 N -0.332 5.332 20 C -0.355 4.355 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.011 3.989 29 C -0.111 4.111 30 H 0.092 0.908 31 C -0.152 4.152 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.171 0.829 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.234 0.766 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.035 0.965 49 H 0.057 0.943 50 H 0.103 0.897 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.741 12.259 6.472 20.975 hybrid contribution -0.186 -1.794 0.747 1.952 sum 15.554 10.465 7.219 20.089 Atomic orbital electron populations 1.20772 0.88953 1.03991 1.02827 1.21082 0.96904 0.87686 0.93478 1.67523 1.10076 1.29120 1.12781 1.22707 0.89510 0.98412 0.95145 1.22056 1.01337 0.93396 1.03234 1.21431 0.93568 0.98572 0.95216 1.20081 0.94180 0.94932 1.02389 1.20669 1.02233 0.95667 0.95776 1.20370 0.77877 0.81151 0.90697 1.90729 1.53647 1.50680 1.46056 1.46164 1.57183 1.23812 1.10092 1.20694 0.97258 0.95596 0.81833 0.90169 1.21921 0.97271 0.99563 0.97575 1.20832 1.01068 0.95943 0.95576 1.21678 0.97618 0.93960 0.99985 0.92438 1.21041 0.91001 0.84594 0.97112 1.44588 1.09664 1.12466 1.66438 1.18994 0.93954 0.94250 1.28312 0.90678 1.24774 0.97296 0.96983 1.01402 1.69957 1.16835 1.18649 1.51404 0.86243 0.79913 0.80243 0.79599 1.21286 1.21663 1.21281 1.21824 0.87038 0.93333 0.96701 1.22200 0.96791 0.97411 0.94732 0.90827 1.21419 1.02027 0.93014 0.98749 0.90273 0.90224 0.90690 0.82885 0.84883 0.85002 0.87432 0.87828 0.76568 0.92379 0.90663 0.92880 0.91894 0.93226 0.94308 0.93792 0.96537 0.94317 0.89687 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.39 36.00 0.34 -0.78 16 2 C 0.15 1.76 6.78 -82.59 -0.56 1.20 16 3 N -0.49 -6.11 10.27 -9.47 -0.10 -6.21 16 4 C 0.10 1.00 11.18 -17.55 -0.20 0.81 16 5 C -0.18 -1.61 10.11 -39.44 -0.40 -2.01 16 6 C -0.06 -0.60 9.84 -39.28 -0.39 -0.99 16 7 C -0.11 -1.23 4.39 -104.48 -0.46 -1.69 16 8 C -0.10 -0.92 5.16 -29.04 -0.15 -1.07 16 9 C 0.51 6.39 7.02 -10.99 -0.08 6.32 16 10 O -0.53 -8.84 15.71 5.55 0.09 -8.75 16 11 N -0.72 -8.65 5.09 -54.52 -0.28 -8.93 16 12 C 0.15 2.15 2.38 -68.66 -0.16 1.99 16 13 H 0.08 1.24 7.61 -51.93 -0.40 0.85 16 14 C -0.12 -1.96 5.42 -26.66 -0.14 -2.11 16 15 C -0.10 -1.54 5.35 -27.87 -0.15 -1.68 16 16 C -0.11 -2.05 2.69 -90.93 -0.24 -2.29 16 17 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.19 4.34 4.39 -3.34 -0.01 4.32 16 19 N -0.61 -14.78 2.97 -169.58 -0.50 -15.28 16 20 C -0.23 -6.11 10.29 -15.06 -0.15 -6.27 16 21 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.33 10.34 55.49 0.57 -25.75 16 24 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 28 C 0.14 2.73 6.52 -1.91 -0.01 2.71 16 29 C -0.09 -1.52 3.69 -88.55 -0.33 -1.84 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 C -0.11 -1.74 4.23 -27.63 -0.12 -1.86 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.79 6.15 -51.92 -0.32 0.47 16 35 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.11 0.77 7.00 -51.93 -0.36 0.41 16 39 H 0.10 0.67 8.06 -51.93 -0.42 0.25 16 40 H 0.40 3.95 8.60 -40.82 -0.35 3.60 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.05 1.25 5.78 -51.93 -0.30 0.95 16 46 H 0.04 1.03 7.50 -51.94 -0.39 0.64 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.04 0.74 8.00 -51.92 -0.42 0.33 16 50 H 0.08 1.54 7.24 -51.93 -0.38 1.17 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 395.87 15.07 5.97 5.97 Total: -1.00 -33.15 395.87 -10.89 -44.04 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.30 Total: 3.87 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.31 Total: -5.58 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.30 Total: -56.17 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.15 -10.89 -44.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980169389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.298 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds