Wall clock time and date at job start Wed Apr 1 2020 02:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31887 * 119.61515 * 2 1 4 4 C 1.31851 * 121.72522 * 179.97438 * 3 2 1 5 5 C 1.38227 * 120.76477 * 359.97438 * 4 3 2 6 6 C 1.38624 * 119.16142 * 359.72614 * 5 4 3 7 7 C 1.38178 * 119.62087 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.41912 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47094 * 84.99971 * 8 7 2 10 10 O 1.21285 * 119.99881 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00216 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00149 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.79120 * 35.48996 * 12 11 9 14 14 C 1.53306 * 109.62898 * 274.99958 * 12 11 9 15 15 C 1.52838 * 108.21287 * 176.50010 * 14 12 11 16 16 C 1.50894 * 111.56768 * 59.05827 * 15 14 12 17 17 H 1.09000 * 108.32179 * 186.69185 * 16 15 14 18 18 C 1.53378 * 113.07558 * 65.83024 * 16 15 14 19 19 N 1.47426 * 106.51557 * 212.47150 * 18 16 15 20 20 C 1.36932 * 125.72843 * 179.30970 * 19 18 16 21 21 H 1.08003 * 120.00279 * 180.02562 * 20 19 18 22 22 C 1.38817 * 120.00156 * 0.02562 * 20 19 18 23 23 N 1.31624 * 119.99272 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00151 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47434 * 59.99911 * 24 22 20 26 26 H 1.48507 * 109.47228 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47230 * 299.99873 * 24 22 20 28 28 C 1.47620 * 108.54648 * 359.32961 * 19 18 16 29 29 C 1.54063 * 113.56503 * 307.87153 * 16 15 14 30 30 H 1.09002 * 112.60889 * 281.00297 * 29 16 15 31 31 C 1.51227 * 109.82378 * 155.53227 * 12 11 9 32 32 H 1.09003 * 109.47319 * 270.01782 * 1 2 3 33 33 H 1.08993 * 109.47659 * 30.02618 * 1 2 3 34 34 H 1.09007 * 109.47017 * 150.02646 * 1 2 3 35 35 H 1.08002 * 119.61512 * 179.97438 * 4 3 2 36 36 H 1.08004 * 120.41676 * 180.02562 * 5 4 3 37 37 H 1.07999 * 120.78829 * 180.27545 * 6 5 4 38 38 H 1.09004 * 109.47380 * 325.00764 * 8 7 2 39 39 H 1.09000 * 109.47641 * 205.00318 * 8 7 2 40 40 H 0.96999 * 120.00317 * 0.02562 * 11 9 8 41 41 H 1.08998 * 109.71296 * 56.82476 * 14 12 11 42 42 H 1.09001 * 109.75120 * 296.19937 * 14 12 11 43 43 H 1.08994 * 109.06482 * 298.51970 * 15 14 12 44 44 H 1.09002 * 109.00352 * 179.55593 * 15 14 12 45 45 H 1.09003 * 110.04597 * 331.73169 * 18 16 15 46 46 H 1.08989 * 110.05117 * 93.15403 * 18 16 15 47 47 H 0.97000 * 119.99186 * 179.97438 * 23 22 20 48 48 H 1.08995 * 110.44039 * 266.12144 * 28 19 18 49 49 H 1.09007 * 110.43808 * 143.61531 * 28 19 18 50 50 H 1.09001 * 108.73135 * 60.89927 * 31 12 11 51 51 H 1.08991 * 108.86836 * 302.09659 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1466 0.0000 4 6 3.4763 1.1951 0.0005 5 6 4.2267 0.0342 0.0016 6 6 3.5766 -1.1902 0.0079 7 6 2.1899 -1.2012 0.0005 8 6 1.4374 -2.5068 0.0017 9 6 1.0787 -2.8811 -1.4133 10 8 1.4027 -2.1590 -2.3323 11 7 0.3978 -4.0183 -1.6576 12 6 0.0496 -4.3824 -3.0333 13 1 0.8482 -4.0769 -3.7094 14 6 -1.2578 -3.6895 -3.4342 15 6 -1.5441 -4.0201 -4.8987 16 6 -1.6651 -5.5081 -5.1181 17 1 -1.7485 -5.6909 -6.1894 18 6 -2.8797 -6.1231 -4.4117 19 7 -2.4906 -7.4910 -4.0234 20 6 -3.2801 -8.3874 -3.3540 21 1 -2.8993 -9.3694 -3.1151 22 6 -4.5701 -8.0339 -2.9823 23 7 -5.0343 -6.8373 -3.2740 24 14 -5.6469 -9.2564 -2.0685 25 1 -4.9944 -9.6303 -0.7880 26 1 -6.9688 -8.6399 -1.7895 27 1 -5.8338 -10.4711 -2.9020 28 6 -1.1066 -7.7321 -4.4771 29 6 -0.4724 -6.3112 -4.5648 30 1 0.3969 -6.2765 -5.2214 31 6 -0.1416 -5.8791 -3.1349 32 1 -0.3634 0.0003 1.0277 33 1 -0.3634 0.8897 -0.5142 34 1 -0.3633 -0.8903 -0.5135 35 1 3.9751 2.1531 0.0001 36 1 5.3057 0.0805 0.0024 37 1 4.1369 -2.1135 0.0134 38 1 0.5267 -2.4008 0.5913 39 1 2.0629 -3.2865 0.4363 40 1 0.1383 -4.5957 -0.9227 41 1 -1.1542 -2.6111 -3.3142 42 1 -2.0738 -4.0523 -2.8091 43 1 -0.7329 -3.6341 -5.5160 44 1 -2.4764 -3.5396 -5.1954 45 1 -3.1312 -5.5404 -3.5255 46 1 -3.7310 -6.1547 -5.0916 47 1 -5.9358 -6.5904 -3.0146 48 1 -1.1050 -8.2106 -5.4563 49 1 -0.5697 -8.3444 -3.7524 50 1 -0.9569 -6.1735 -2.4740 51 1 0.7750 -6.3741 -2.8142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980169389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:01 Heat of formation + Delta-G solvation = -10.818231 kcal Electronic energy + Delta-G solvation = -30499.841464 eV Core-core repulsion = 26590.981622 eV Total energy + Delta-G solvation = -3908.859842 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67664 -41.06496 -39.94368 -36.90432 -34.96106 -34.74448 -33.88585 -33.56141 -31.93835 -30.69778 -29.48251 -28.18797 -27.53406 -26.74181 -24.03390 -23.65854 -23.11438 -22.37735 -21.82687 -21.08073 -19.62729 -18.81266 -17.98849 -17.76886 -17.44607 -17.06937 -16.75450 -16.46685 -15.98405 -15.69338 -15.65474 -15.48409 -14.93473 -14.90299 -14.58248 -14.11196 -14.01846 -13.95807 -13.82380 -13.57139 -13.35688 -13.29803 -13.27721 -13.04027 -12.93890 -12.72377 -12.64718 -12.60832 -12.28801 -12.21347 -12.04062 -11.75392 -11.65033 -11.33700 -11.10826 -10.97969 -10.90490 -10.61696 -10.55747 -10.37778 -9.95738 -9.69864 -8.81480 -7.79644 -5.13681 0.16190 0.38180 1.47076 1.49568 1.55792 1.68463 2.23424 2.52636 2.88404 3.38444 3.42045 3.61306 3.63839 3.78412 3.86890 3.88904 3.93282 3.99184 4.09310 4.13663 4.21303 4.32135 4.36105 4.50128 4.56191 4.60077 4.60835 4.62485 4.65051 4.69239 4.69800 4.73176 4.83434 4.90121 5.00019 5.07184 5.10453 5.13788 5.19718 5.25854 5.28445 5.31049 5.32790 5.39049 5.54717 5.61006 5.65263 5.76290 5.83177 5.91062 6.25004 6.63049 7.08022 7.15305 7.31251 7.83683 8.49947 9.30219 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.002433 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.562010 B =11504.373063 C =11996.090368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.119 3.881 3 N -0.518 5.518 4 C 0.084 3.916 5 C -0.178 4.178 6 C -0.071 4.071 7 C -0.127 4.127 8 C -0.095 4.095 9 C 0.516 3.484 10 O -0.577 6.577 11 N -0.715 5.715 12 C 0.161 3.839 13 H 0.080 0.920 14 C -0.118 4.118 15 C -0.092 4.092 16 C -0.103 4.103 17 H 0.061 0.939 18 C 0.200 3.800 19 N -0.624 5.624 20 C -0.236 4.236 21 H 0.081 0.919 22 C -0.066 4.066 23 N -0.949 5.949 24 Si 0.973 3.027 25 H -0.275 1.275 26 H -0.298 1.298 27 H -0.281 1.281 28 C 0.131 3.869 29 C -0.078 4.078 30 H 0.110 0.890 31 C -0.104 4.104 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.176 0.824 36 H 0.164 0.836 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.136 0.864 40 H 0.412 0.588 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.022 0.978 46 H -0.008 1.008 47 H 0.244 0.756 48 H 0.019 0.981 49 H 0.049 0.951 50 H 0.053 0.947 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.108 10.231 7.933 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 N -0.228 5.228 4 C -0.073 4.073 5 C -0.197 4.197 6 C -0.096 4.096 7 C -0.129 4.129 8 C -0.135 4.135 9 C 0.304 3.696 10 O -0.456 6.456 11 N -0.366 5.366 12 C 0.056 3.944 13 H 0.098 0.902 14 C -0.156 4.156 15 C -0.130 4.130 16 C -0.123 4.123 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.350 5.350 20 C -0.365 4.365 21 H 0.099 0.901 22 C -0.259 4.259 23 N -0.599 5.599 24 Si 0.802 3.198 25 H -0.201 1.201 26 H -0.225 1.225 27 H -0.208 1.208 28 C 0.006 3.994 29 C -0.097 4.097 30 H 0.128 0.872 31 C -0.142 4.142 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.193 0.807 36 H 0.182 0.818 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.248 0.752 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.010 0.990 47 H 0.053 0.947 48 H 0.037 0.963 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.655 11.484 7.366 23.111 hybrid contribution -1.041 -1.560 0.442 1.927 sum 17.614 9.923 7.808 21.672 Atomic orbital electron populations 1.20754 0.88735 1.03084 1.03675 1.21344 0.97486 0.88343 0.94586 1.67498 1.11492 1.29842 1.13992 1.23208 0.89060 1.00145 0.94880 1.22428 1.02883 0.92743 1.01687 1.21844 0.93391 0.99926 0.94469 1.20293 0.95008 0.95068 1.02522 1.20706 1.03512 0.95811 0.93507 1.20918 0.76753 0.80259 0.91701 1.90713 1.55345 1.51853 1.47696 1.46059 1.56909 1.24132 1.09540 1.20422 0.96081 0.94608 0.83246 0.90184 1.21813 0.97409 0.99440 0.96967 1.20801 1.01634 0.94380 0.96229 1.21543 0.96046 0.95173 0.99512 0.92049 1.20731 0.91943 0.84556 0.95281 1.44865 1.11509 1.12485 1.66185 1.19388 0.94450 0.94907 1.27747 0.90112 1.25570 0.98764 0.98680 1.02897 1.70191 1.16555 1.20376 1.52761 0.85231 0.77729 0.78084 0.78762 1.20070 1.22463 1.20771 1.22029 0.85011 0.95662 0.96703 1.22226 0.96894 0.94441 0.96183 0.87235 1.21280 1.01896 0.93755 0.97225 0.88562 0.91387 0.91230 0.80689 0.81839 0.82580 0.85743 0.84571 0.75177 0.92586 0.93254 0.90496 0.92711 0.96012 0.98968 0.94697 0.96287 0.93295 0.92808 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.39 71.24 0.67 -1.52 16 2 C 0.12 2.82 6.78 42.54 0.29 3.11 16 3 N -0.52 -12.91 10.27 -183.89 -1.89 -14.80 16 4 C 0.08 1.59 11.18 84.69 0.95 2.54 16 5 C -0.18 -2.76 10.11 22.36 0.23 -2.53 16 6 C -0.07 -1.18 9.84 22.47 0.22 -0.96 16 7 C -0.13 -2.52 4.39 -19.77 -0.09 -2.61 16 8 C -0.10 -1.47 5.16 29.10 0.15 -1.32 16 9 C 0.52 11.88 7.02 87.66 0.62 12.50 16 10 O -0.58 -18.37 15.71 -3.04 -0.05 -18.42 16 11 N -0.72 -15.77 5.09 -444.80 -2.26 -18.04 16 12 C 0.16 4.34 2.38 44.51 0.11 4.44 16 13 H 0.08 2.25 7.61 -2.39 -0.02 2.24 16 14 C -0.12 -3.68 5.42 30.64 0.17 -3.52 16 15 C -0.09 -2.90 5.35 29.86 0.16 -2.74 16 16 C -0.10 -3.70 2.69 -10.99 -0.03 -3.73 16 17 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 18 C 0.20 9.62 4.39 86.33 0.38 10.00 16 19 N -0.62 -30.89 2.97 -690.42 -2.05 -32.93 16 20 C -0.24 -12.86 10.29 84.04 0.86 -12.00 16 21 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 22 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 23 N -0.95 -56.57 10.34 21.65 0.22 -56.34 16 24 Si 0.97 45.17 29.55 68.60 2.03 47.19 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C 0.13 5.02 6.52 87.15 0.57 5.59 16 29 C -0.08 -2.41 3.69 -9.45 -0.03 -2.44 16 30 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 31 C -0.10 -2.95 4.23 30.01 0.13 -2.82 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.47 6.15 -2.38 -0.01 1.46 16 35 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.12 1.50 7.00 -2.38 -0.02 1.49 16 39 H 0.14 1.21 8.06 -2.39 -0.02 1.19 16 40 H 0.41 7.25 8.60 -92.71 -0.80 6.46 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.05 1.80 6.75 -2.39 -0.02 1.78 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.02 1.16 5.78 -2.39 -0.01 1.15 16 46 H -0.01 -0.45 7.50 -2.39 -0.02 -0.47 16 47 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.05 1.77 8.00 -2.38 -0.02 1.75 16 50 H 0.05 1.91 7.24 -2.39 -0.02 1.89 16 51 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -75.31 395.87 1.93 -73.37 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.13 Total: 21.23 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.80 Total: -1.27 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -5.98 Total: -122.11 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.05 Total: -18.42 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -75.31 1.93 -73.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980169389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.554 kcal (2) G-P(sol) polarization free energy of solvation -75.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds